data_8ZFT
#
_model_server_result.job_id            4os4vL2ksLS_Qq-zOSMxHQ 
_model_server_result.datetime_utc      '2024-11-21 23:23:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zft 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    8ZFT 
#
_exptl.entry_id    8ZFT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              547.6 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.46 
_cell.angle_gamma         90 
_cell.entry_id            8ZFT 
_cell.length_a            93.88 
_cell.length_b            62.68 
_cell.length_c            121.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZFT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.94 31.34 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 83 A CYS 285 1_555 C C03 EEY . A EEY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
covale ? covale2 B SG CYS 83 B CYS 285 1_555 E C03 EEY . B EEY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
#
_chem_comp.formula           'C33 H29 N3 O5' 
_chem_comp.formula_weight    547.6 
_chem_comp.id                3JX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C32 C31 3JX doub 1 n y 
C32 C33 3JX sing 2 n y 
C31 C18 3JX sing 3 n y 
C19 C17 3JX sing 4 n n 
O37 N36 3JX doub 5 n n 
N36 C33 3JX sing 6 n n 
N36 O38 3JX sing 7 n n 
C33 C34 3JX doub 8 n y 
C18 C17 3JX sing 9 n n 
C18 C35 3JX doub 10 n y 
C17 N16 3JX sing 11 n n 
N16 C14 3JX sing 12 n n 
C34 C35 3JX sing 13 n y 
C14 O15 3JX doub 14 n n 
C14 C01 3JX sing 15 n n 
C06 C01 3JX doub 16 n y 
C06 C05 3JX sing 17 n y 
C01 C02 3JX sing 18 n y 
C10 C09 3JX sing 19 n n 
C05 C09 3JX sing 20 n y 
C05 C04 3JX doub 21 n y 
C02 C03 3JX doub 22 n y 
C09 C08 3JX doub 23 n y 
C04 C03 3JX sing 24 n y 
C04 N07 3JX sing 25 n y 
C08 N07 3JX sing 26 n y 
C08 C11 3JX sing 27 n n 
N07 C12 3JX sing 28 n n 
C20 C21 3JX doub 29 n y 
C20 C13 3JX sing 30 n y 
C12 C13 3JX sing 31 n n 
C21 C22 3JX sing 32 n y 
C13 C24 3JX doub 33 n y 
O40 C39 3JX doub 34 n n 
C22 C25 3JX sing 35 n n 
C22 C23 3JX doub 36 n y 
C24 C23 3JX sing 37 n y 
C25 C26 3JX doub 38 n y 
C25 C30 3JX sing 39 n y 
C39 C30 3JX sing 40 n n 
C39 O41 3JX sing 41 n n 
C26 C27 3JX sing 42 n y 
C30 C29 3JX doub 43 n y 
C27 C28 3JX doub 44 n y 
C29 C28 3JX sing 45 n y 
C02 H1 3JX sing 46 n n 
C03 H2 3JX sing 47 n n 
C06 H3 3JX sing 48 n n 
C10 H4 3JX sing 49 n n 
C10 H5 3JX sing 50 n n 
C10 H6 3JX sing 51 n n 
C11 H7 3JX sing 52 n n 
C11 H8 3JX sing 53 n n 
C11 H9 3JX sing 54 n n 
C12 H10 3JX sing 55 n n 
C12 H11 3JX sing 56 n n 
N16 H12 3JX sing 57 n n 
C17 H13 3JX sing 58 n n 
C19 H14 3JX sing 59 n n 
C19 H15 3JX sing 60 n n 
C19 H16 3JX sing 61 n n 
C20 H17 3JX sing 62 n n 
C21 H18 3JX sing 63 n n 
C23 H19 3JX sing 64 n n 
C24 H20 3JX sing 65 n n 
C26 H21 3JX sing 66 n n 
C27 H22 3JX sing 67 n n 
C28 H23 3JX sing 68 n n 
C29 H24 3JX sing 69 n n 
C31 H25 3JX sing 70 n n 
C32 H26 3JX sing 71 n n 
C34 H27 3JX sing 72 n n 
C35 H28 3JX sing 73 n n 
O41 H29 3JX sing 74 n n 
#
_atom_sites.entry_id                     8ZFT 
_atom_sites.fract_transf_matrix[1][1]    0.010652 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002354 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015954 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EEY A 1 501 501 EEY LIG . 
D 3 3JX A 1 502 503 3JX 3JX . 
E 2 EEY B 1 501 501 EEY LIG . 
F 3 3JX B 1 502 503 3JX 3JX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 3JX . . . D 3 15.383 68.197 9.537 1 92.18 ? C01 3JX 502 A 1 
HETATM 2 C C02 3JX . . . D 3 14.181 68.904 9.395 1 88.51 ? C02 3JX 502 A 1 
HETATM 3 C C03 3JX . . . D 3 14.148 70.203 8.943 1 98.41 ? C03 3JX 502 A 1 
HETATM 4 C C04 3JX . . . D 3 15.366 70.799 8.628 1 107.69 ? C04 3JX 502 A 1 
HETATM 5 C C05 3JX . . . D 3 16.592 70.117 8.76 1 99.35 ? C05 3JX 502 A 1 
HETATM 6 C C06 3JX . . . D 3 16.594 68.802 9.219 1 88.99 ? C06 3JX 502 A 1 
HETATM 7 N N07 3JX . . . D 3 15.643 72.067 8.161 1 111.32 ? N07 3JX 502 A 1 
HETATM 8 C C08 3JX . . . D 3 17.023 72.193 7.996 1 108.74 ? C08 3JX 502 A 1 
HETATM 9 C C09 3JX . . . D 3 17.625 71.027 8.351 1 103.81 ? C09 3JX 502 A 1 
HETATM 10 C C10 3JX . . . D 3 19.091 70.7 8.337 1 109.25 ? C10 3JX 502 A 1 
HETATM 11 C C11 3JX . . . D 3 17.639 73.457 7.499 1 111.99 ? C11 3JX 502 A 1 
HETATM 12 C C12 3JX . . . D 3 14.632 73.087 7.892 1 112.99 ? C12 3JX 502 A 1 
HETATM 13 C C13 3JX . . . D 3 14.647 74.223 8.887 1 121.01 ? C13 3JX 502 A 1 
HETATM 14 C C14 3JX . . . D 3 15.37 66.783 10.032 1 95.19 ? C14 3JX 502 A 1 
HETATM 15 O O15 3JX . . . D 3 16.276 66.356 10.747 1 94.5 ? O15 3JX 502 A 1 
HETATM 16 N N16 3JX . . . D 3 14.333 66.022 9.659 1 92.01 ? N16 3JX 502 A 1 
HETATM 17 C C17 3JX . . . D 3 13.555 65.232 10.613 1 97.78 ? C17 3JX 502 A 1 
HETATM 18 C C18 3JX . . . D 3 12.066 65.464 10.447 1 97.51 ? C18 3JX 502 A 1 
HETATM 19 C C19 3JX . . . D 3 14.037 65.541 12.026 1 89.73 ? C19 3JX 502 A 1 
HETATM 20 C C20 3JX . . . D 3 14.136 74.053 10.163 1 122.85 ? C20 3JX 502 A 1 
HETATM 21 C C21 3JX . . . D 3 14.15 75.094 11.076 1 129.91 ? C21 3JX 502 A 1 
HETATM 22 C C22 3JX . . . D 3 14.675 76.338 10.741 1 134.59 ? C22 3JX 502 A 1 
HETATM 23 C C23 3JX . . . D 3 15.187 76.499 9.457 1 130.06 ? C23 3JX 502 A 1 
HETATM 24 C C24 3JX . . . D 3 15.172 75.458 8.544 1 125.7 ? C24 3JX 502 A 1 
HETATM 25 C C25 3JX . . . D 3 14.691 77.458 11.723 1 135.98 ? C25 3JX 502 A 1 
HETATM 26 C C26 3JX . . . D 3 15.043 77.183 13.045 1 127.24 ? C26 3JX 502 A 1 
HETATM 27 C C27 3JX . . . D 3 15.077 78.177 14.003 1 130.09 ? C27 3JX 502 A 1 
HETATM 28 C C28 3JX . . . D 3 14.759 79.472 13.662 1 139.36 ? C28 3JX 502 A 1 
HETATM 29 C C29 3JX . . . D 3 14.408 79.773 12.362 1 142.53 ? C29 3JX 502 A 1 
HETATM 30 C C30 3JX . . . D 3 14.369 78.781 11.386 1 141.96 ? C30 3JX 502 A 1 
HETATM 31 C C31 3JX . . . D 3 11.55 65.896 9.234 1 84.07 ? C31 3JX 502 A 1 
HETATM 32 C C32 3JX . . . D 3 10.196 66.113 9.061 1 81.42 ? C32 3JX 502 A 1 
HETATM 33 C C33 3JX . . . D 3 9.352 65.886 10.144 1 91.48 ? C33 3JX 502 A 1 
HETATM 34 C C34 3JX . . . D 3 9.835 65.452 11.375 1 97.48 ? C34 3JX 502 A 1 
HETATM 35 C C35 3JX . . . D 3 11.196 65.248 11.506 1 97.82 ? C35 3JX 502 A 1 
HETATM 36 N N36 3JX . . . D 3 7.921 66.108 9.984 1 92.65 ? N36 3JX 502 A 1 
HETATM 37 O O37 3JX . . . D 3 7.254 66.319 10.985 1 94.71 ? O37 3JX 502 A 1 
HETATM 38 O O38 3JX . . . D 3 7.453 66.074 8.857 1 82.99 ? O38 3JX 502 A 1 
HETATM 39 C C39 3JX . . . D 3 13.973 79.208 9.995 1 139.34 ? C39 3JX 502 A 1 
HETATM 40 O O40 3JX . . . D 3 14.843 79.167 9.106 1 135.09 ? O40 3JX 502 A 1 
HETATM 41 O O41 3JX . . . D 3 12.799 79.576 9.813 1 135.49 ? O41 3JX 502 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          86 
_model_server_stats.element_count           41 
#