data_8ZFW
#
_model_server_result.job_id            lxjGRnBMjW40cazoK2tmuQ 
_model_server_result.datetime_utc      '2024-10-12 16:32:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zfw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    8ZFW 
#
_exptl.entry_id    8ZFW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZFW 
_cell.length_a            80.501 
_cell.length_b            116.587 
_cell.length_c            50.297 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZFW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 155 A ASP 155 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc2 A OD2 ASP 155 A ASP 155 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc3 A OD2 ASP 181 A ASP 181 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc4 A OD1 ASN 182 A ASN 182 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc5 D MG MG . A MG 502 1_555 J O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc6 D MG MG . A MG 502 1_555 J O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc7 D MG MG . A MG 502 1_555 J O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc8 B OD1 ASP 155 B ASP 155 1_555 H MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc9 B OD2 ASP 155 B ASP 155 1_555 H MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc10 B OD2 ASP 181 B ASP 181 1_555 H MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc11 B OD1 ASN 182 B ASN 182 1_555 H MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc12 G O15 A1LU2 . B A1LU2 602 1_555 H MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc13 G O17 A1LU2 . B A1LU2 602 1_555 H MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc14 H MG MG . B MG 603 1_555 K O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 327 n n 
N HN1 SAH sing 328 n n 
N HN2 SAH sing 329 n n 
CA CB SAH sing 330 n n 
CA C SAH sing 331 n n 
CA HA SAH sing 332 n n 
CB CG SAH sing 333 n n 
CB HB1 SAH sing 334 n n 
CB HB2 SAH sing 335 n n 
CG SD SAH sing 336 n n 
CG HG1 SAH sing 337 n n 
CG HG2 SAH sing 338 n n 
SD C5' SAH sing 339 n n 
C O SAH doub 340 n n 
C OXT SAH sing 341 n n 
OXT HXT SAH sing 342 n n 
C5' C4' SAH sing 343 n n 
C5' "H5'1" SAH sing 344 n n 
C5' "H5'2" SAH sing 345 n n 
C4' O4' SAH sing 346 n n 
C4' C3' SAH sing 347 n n 
C4' H4' SAH sing 348 n n 
O4' C1' SAH sing 349 n n 
C3' O3' SAH sing 350 n n 
C3' C2' SAH sing 351 n n 
C3' H3' SAH sing 352 n n 
O3' HO3' SAH sing 353 n n 
C2' O2' SAH sing 354 n n 
C2' C1' SAH sing 355 n n 
C2' H2' SAH sing 356 n n 
O2' HO2' SAH sing 357 n n 
C1' N9 SAH sing 358 n n 
C1' H1' SAH sing 359 n n 
N9 C8 SAH sing 360 n y 
N9 C4 SAH sing 361 n y 
C8 N7 SAH doub 362 n y 
C8 H8 SAH sing 363 n n 
N7 C5 SAH sing 364 n y 
C5 C6 SAH sing 365 n y 
C5 C4 SAH doub 366 n y 
C6 N6 SAH sing 367 n n 
C6 N1 SAH doub 368 n y 
N6 HN61 SAH sing 369 n n 
N6 HN62 SAH sing 370 n n 
N1 C2 SAH sing 371 n y 
C2 N3 SAH doub 372 n y 
C2 H2 SAH sing 373 n n 
N3 C4 SAH sing 374 n y 
#
_atom_sites.entry_id                     8ZFW 
_atom_sites.fract_transf_matrix[1][1]    0.012422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008577 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 501 501 GOL GOL . 
D 3 MG A 1 502 301 MG MG . 
E 4 SAH A 1 503 401 SAH SAH . 
F 2 GOL B 1 601 601 GOL GOL . 
G 5 A1LU2 B 1 602 701 A1LU2 LIG . 
H 3 MG B 1 603 301 MG MG . 
I 4 SAH B 1 604 401 SAH SAH . 
J 6 HOH A 1 601 91 HOH HOH . 
J 6 HOH A 2 602 47 HOH HOH . 
J 6 HOH A 3 603 4 HOH HOH . 
J 6 HOH A 4 604 50 HOH HOH . 
J 6 HOH A 5 605 53 HOH HOH . 
J 6 HOH A 6 606 109 HOH HOH . 
J 6 HOH A 7 607 90 HOH HOH . 
J 6 HOH A 8 608 3 HOH HOH . 
J 6 HOH A 9 609 46 HOH HOH . 
J 6 HOH A 10 610 117 HOH HOH . 
J 6 HOH A 11 611 10 HOH HOH . 
J 6 HOH A 12 612 108 HOH HOH . 
J 6 HOH A 13 613 12 HOH HOH . 
J 6 HOH A 14 614 84 HOH HOH . 
J 6 HOH A 15 615 49 HOH HOH . 
J 6 HOH A 16 616 16 HOH HOH . 
J 6 HOH A 17 617 60 HOH HOH . 
J 6 HOH A 18 618 39 HOH HOH . 
J 6 HOH A 19 619 20 HOH HOH . 
J 6 HOH A 20 620 78 HOH HOH . 
J 6 HOH A 21 621 104 HOH HOH . 
J 6 HOH A 22 622 44 HOH HOH . 
J 6 HOH A 23 623 17 HOH HOH . 
J 6 HOH A 24 624 9 HOH HOH . 
J 6 HOH A 25 625 18 HOH HOH . 
J 6 HOH A 26 626 35 HOH HOH . 
J 6 HOH A 27 627 56 HOH HOH . 
J 6 HOH A 28 628 8 HOH HOH . 
J 6 HOH A 29 629 34 HOH HOH . 
J 6 HOH A 30 630 28 HOH HOH . 
J 6 HOH A 31 631 37 HOH HOH . 
J 6 HOH A 32 632 116 HOH HOH . 
J 6 HOH A 33 633 29 HOH HOH . 
J 6 HOH A 34 634 59 HOH HOH . 
J 6 HOH A 35 635 74 HOH HOH . 
J 6 HOH A 36 636 26 HOH HOH . 
J 6 HOH A 37 637 72 HOH HOH . 
J 6 HOH A 38 638 100 HOH HOH . 
J 6 HOH A 39 639 42 HOH HOH . 
J 6 HOH A 40 640 2 HOH HOH . 
J 6 HOH A 41 641 86 HOH HOH . 
J 6 HOH A 42 642 63 HOH HOH . 
J 6 HOH A 43 643 83 HOH HOH . 
J 6 HOH A 44 644 41 HOH HOH . 
J 6 HOH A 45 645 101 HOH HOH . 
J 6 HOH A 46 646 80 HOH HOH . 
J 6 HOH A 47 647 76 HOH HOH . 
J 6 HOH A 48 648 52 HOH HOH . 
J 6 HOH A 49 649 85 HOH HOH . 
J 6 HOH A 50 650 15 HOH HOH . 
J 6 HOH A 51 651 120 HOH HOH . 
J 6 HOH A 52 652 51 HOH HOH . 
J 6 HOH A 53 653 87 HOH HOH . 
J 6 HOH A 54 654 127 HOH HOH . 
J 6 HOH A 55 655 122 HOH HOH . 
J 6 HOH A 56 656 111 HOH HOH . 
J 6 HOH A 57 657 113 HOH HOH . 
J 6 HOH A 58 658 58 HOH HOH . 
J 6 HOH A 59 659 115 HOH HOH . 
J 6 HOH A 60 660 102 HOH HOH . 
J 6 HOH A 61 661 118 HOH HOH . 
J 6 HOH A 62 662 68 HOH HOH . 
J 6 HOH A 63 663 123 HOH HOH . 
J 6 HOH A 64 664 119 HOH HOH . 
J 6 HOH A 65 665 107 HOH HOH . 
J 6 HOH A 66 666 110 HOH HOH . 
K 6 HOH B 1 701 55 HOH HOH . 
K 6 HOH B 2 702 112 HOH HOH . 
K 6 HOH B 3 703 32 HOH HOH . 
K 6 HOH B 4 704 22 HOH HOH . 
K 6 HOH B 5 705 40 HOH HOH . 
K 6 HOH B 6 706 65 HOH HOH . 
K 6 HOH B 7 707 81 HOH HOH . 
K 6 HOH B 8 708 5 HOH HOH . 
K 6 HOH B 9 709 38 HOH HOH . 
K 6 HOH B 10 710 54 HOH HOH . 
K 6 HOH B 11 711 19 HOH HOH . 
K 6 HOH B 12 712 6 HOH HOH . 
K 6 HOH B 13 713 64 HOH HOH . 
K 6 HOH B 14 714 30 HOH HOH . 
K 6 HOH B 15 715 11 HOH HOH . 
K 6 HOH B 16 716 7 HOH HOH . 
K 6 HOH B 17 717 24 HOH HOH . 
K 6 HOH B 18 718 71 HOH HOH . 
K 6 HOH B 19 719 99 HOH HOH . 
K 6 HOH B 20 720 13 HOH HOH . 
K 6 HOH B 21 721 95 HOH HOH . 
K 6 HOH B 22 722 88 HOH HOH . 
K 6 HOH B 23 723 106 HOH HOH . 
K 6 HOH B 24 724 27 HOH HOH . 
K 6 HOH B 25 725 69 HOH HOH . 
K 6 HOH B 26 726 66 HOH HOH . 
K 6 HOH B 27 727 103 HOH HOH . 
K 6 HOH B 28 728 126 HOH HOH . 
K 6 HOH B 29 729 61 HOH HOH . 
K 6 HOH B 30 730 96 HOH HOH . 
K 6 HOH B 31 731 25 HOH HOH . 
K 6 HOH B 32 732 1 HOH HOH . 
K 6 HOH B 33 733 21 HOH HOH . 
K 6 HOH B 34 734 33 HOH HOH . 
K 6 HOH B 35 735 93 HOH HOH . 
K 6 HOH B 36 736 31 HOH HOH . 
K 6 HOH B 37 737 89 HOH HOH . 
K 6 HOH B 38 738 98 HOH HOH . 
K 6 HOH B 39 739 75 HOH HOH . 
K 6 HOH B 40 740 57 HOH HOH . 
K 6 HOH B 41 741 23 HOH HOH . 
K 6 HOH B 42 742 43 HOH HOH . 
K 6 HOH B 43 743 45 HOH HOH . 
K 6 HOH B 44 744 36 HOH HOH . 
K 6 HOH B 45 745 82 HOH HOH . 
K 6 HOH B 46 746 70 HOH HOH . 
K 6 HOH B 47 747 73 HOH HOH . 
K 6 HOH B 48 748 79 HOH HOH . 
K 6 HOH B 49 749 14 HOH HOH . 
K 6 HOH B 50 750 105 HOH HOH . 
K 6 HOH B 51 751 131 HOH HOH . 
K 6 HOH B 52 752 77 HOH HOH . 
K 6 HOH B 53 753 133 HOH HOH . 
K 6 HOH B 54 754 67 HOH HOH . 
K 6 HOH B 55 755 125 HOH HOH . 
K 6 HOH B 56 756 94 HOH HOH . 
K 6 HOH B 57 757 130 HOH HOH . 
K 6 HOH B 58 758 129 HOH HOH . 
K 6 HOH B 59 759 124 HOH HOH . 
K 6 HOH B 60 760 128 HOH HOH . 
K 6 HOH B 61 761 114 HOH HOH . 
K 6 HOH B 62 762 92 HOH HOH . 
K 6 HOH B 63 763 121 HOH HOH . 
K 6 HOH B 64 764 48 HOH HOH . 
K 6 HOH B 65 765 97 HOH HOH . 
K 6 HOH B 66 766 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . E 4 26.972 13.537 24.539 1 30.71 ? N SAH 503 A 1 
HETATM 2 C CA SAH . . . E 4 27.305 13.385 25.952 1 35.34 ? CA SAH 503 A 1 
HETATM 3 C CB SAH . . . E 4 28.748 12.908 26.144 1 31.55 ? CB SAH 503 A 1 
HETATM 4 C CG SAH . . . E 4 29.151 11.63 25.409 1 37.38 ? CG SAH 503 A 1 
HETATM 5 S SD SAH . . . E 4 30.566 10.828 26.218 1 41.81 ? SD SAH 503 A 1 
HETATM 6 C C SAH . . . E 4 27.087 14.696 26.703 1 37.3 ? C SAH 503 A 1 
HETATM 7 O O SAH . . . E 4 26.227 15.502 26.342 1 37.04 ? O SAH 503 A 1 
HETATM 8 O OXT SAH . . . E 4 27.757 14.978 27.697 1 38.58 ? OXT SAH 503 A 1 
HETATM 9 C C5' SAH . . . E 4 30.561 9.364 25.142 1 41.86 ? C5' SAH 503 A 1 
HETATM 10 C C4' SAH . . . E 4 29.547 8.272 25.493 1 42.13 ? C4' SAH 503 A 1 
HETATM 11 O O4' SAH . . . E 4 29.508 7.303 24.462 1 41.89 ? O4' SAH 503 A 1 
HETATM 12 C C3' SAH . . . E 4 29.88 7.514 26.77 1 43.11 ? C3' SAH 503 A 1 
HETATM 13 O O3' SAH . . . E 4 28.778 7.616 27.644 1 42.47 ? O3' SAH 503 A 1 
HETATM 14 C C2' SAH . . . E 4 30.064 6.065 26.356 1 40.2 ? C2' SAH 503 A 1 
HETATM 15 O O2' SAH . . . E 4 29.459 5.197 27.281 1 43.31 ? O2' SAH 503 A 1 
HETATM 16 C C1' SAH . . . E 4 29.333 6.018 25.028 1 42.96 ? C1' SAH 503 A 1 
HETATM 17 N N9 SAH . . . E 4 29.803 4.958 24.116 1 46.44 ? N9 SAH 503 A 1 
HETATM 18 C C8 SAH . . . E 4 31.075 4.47 23.964 1 42.52 ? C8 SAH 503 A 1 
HETATM 19 N N7 SAH . . . E 4 31.044 3.509 23.009 1 42.77 ? N7 SAH 503 A 1 
HETATM 20 C C5 SAH . . . E 4 29.779 3.376 22.549 1 43.93 ? C5 SAH 503 A 1 
HETATM 21 C C6 SAH . . . E 4 29.189 2.551 21.591 1 43.89 ? C6 SAH 503 A 1 
HETATM 22 N N6 SAH . . . E 4 29.904 1.662 20.904 1 42.2 ? N6 SAH 503 A 1 
HETATM 23 N N1 SAH . . . E 4 27.838 2.658 21.344 1 40.34 ? N1 SAH 503 A 1 
HETATM 24 C C2 SAH . . . E 4 27.076 3.57 22.042 1 38.41 ? C2 SAH 503 A 1 
HETATM 25 N N3 SAH . . . E 4 27.662 4.377 22.993 1 40.82 ? N3 SAH 503 A 1 
HETATM 26 C C4 SAH . . . E 4 28.99 4.283 23.242 1 44.63 ? C4 SAH 503 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           26 
#