data_8ZHU # _model_server_result.job_id hsEVhcs2BCP7KAe4LkgytA _model_server_result.datetime_utc '2025-07-25 11:54:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zhu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8ZHU # _exptl.entry_id 8ZHU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.307 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-thioadenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZHU _cell.length_a 49.73 _cell.length_b 94.317 _cell.length_c 136.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZHU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H13 N5 O3 S' _chem_comp.formula_weight 283.307 _chem_comp.id A4D _chem_comp.mon_nstd_flag . _chem_comp.name "5'-thioadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 A4D doub 1 n y N1 C6 A4D sing 2 n y C2 N3 A4D sing 3 n y N3 C4 A4D doub 4 n y C4 C5 A4D sing 5 n y C4 N9 A4D sing 6 n y C5 C6 A4D doub 7 n y C5 N7 A4D sing 8 n y C6 N6 A4D sing 9 n n N7 C8 A4D doub 10 n y C8 N9 A4D sing 11 n y N9 CAR A4D sing 12 n n OAB CAO A4D sing 13 n n OAC CAP A4D sing 14 n n SAD CAG A4D sing 15 n n CAG CAQ A4D sing 16 n n OAK CAQ A4D sing 17 n n OAK CAR A4D sing 18 n n CAO CAP A4D sing 19 n n CAO CAQ A4D sing 20 n n CAP CAR A4D sing 21 n n C2 H2 A4D sing 22 n n N6 HN6 A4D sing 23 n n N6 HN6A A4D sing 24 n n C8 H8 A4D sing 25 n n OAB HOAB A4D sing 26 n n OAC HOAC A4D sing 27 n n SAD HSAD A4D sing 28 n n CAG HAG A4D sing 29 n n CAG HAGA A4D sing 30 n n CAO HAO A4D sing 31 n n CAP HAP A4D sing 32 n n CAQ HAQ A4D sing 33 n n CAR HAR A4D sing 34 n n # _atom_sites.entry_id 8ZHU _atom_sites.fract_transf_matrix[1][1] 0.020109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A4D A 1 401 401 A4D SAH . D 2 A4D B 1 401 401 A4D SAH . E 3 HOH A 1 501 94 HOH HOH . E 3 HOH A 2 502 93 HOH HOH . E 3 HOH A 3 503 13 HOH HOH . E 3 HOH A 4 504 55 HOH HOH . E 3 HOH A 5 505 87 HOH HOH . E 3 HOH A 6 506 2 HOH HOH . E 3 HOH A 7 507 5 HOH HOH . E 3 HOH A 8 508 15 HOH HOH . E 3 HOH A 9 509 12 HOH HOH . E 3 HOH A 10 510 95 HOH HOH . E 3 HOH A 11 511 44 HOH HOH . E 3 HOH A 12 512 81 HOH HOH . E 3 HOH A 13 513 86 HOH HOH . E 3 HOH A 14 514 35 HOH HOH . E 3 HOH A 15 515 32 HOH HOH . E 3 HOH A 16 516 92 HOH HOH . E 3 HOH A 17 517 4 HOH HOH . E 3 HOH A 18 518 79 HOH HOH . E 3 HOH A 19 519 9 HOH HOH . E 3 HOH A 20 520 53 HOH HOH . E 3 HOH A 21 521 29 HOH HOH . E 3 HOH A 22 522 27 HOH HOH . E 3 HOH A 23 523 18 HOH HOH . E 3 HOH A 24 524 24 HOH HOH . E 3 HOH A 25 525 37 HOH HOH . E 3 HOH A 26 526 52 HOH HOH . E 3 HOH A 27 527 3 HOH HOH . E 3 HOH A 28 528 10 HOH HOH . E 3 HOH A 29 529 90 HOH HOH . E 3 HOH A 30 530 56 HOH HOH . E 3 HOH A 31 531 25 HOH HOH . E 3 HOH A 32 532 1 HOH HOH . E 3 HOH A 33 533 63 HOH HOH . E 3 HOH A 34 534 7 HOH HOH . E 3 HOH A 35 535 33 HOH HOH . E 3 HOH A 36 536 59 HOH HOH . E 3 HOH A 37 537 42 HOH HOH . E 3 HOH A 38 538 41 HOH HOH . E 3 HOH A 39 539 22 HOH HOH . E 3 HOH A 40 540 73 HOH HOH . E 3 HOH A 41 541 8 HOH HOH . E 3 HOH A 42 542 6 HOH HOH . E 3 HOH A 43 543 98 HOH HOH . E 3 HOH A 44 544 66 HOH HOH . E 3 HOH A 45 545 82 HOH HOH . E 3 HOH A 46 546 75 HOH HOH . E 3 HOH A 47 547 17 HOH HOH . E 3 HOH A 48 548 96 HOH HOH . E 3 HOH A 49 549 50 HOH HOH . E 3 HOH A 50 550 45 HOH HOH . E 3 HOH A 51 551 30 HOH HOH . E 3 HOH A 52 552 72 HOH HOH . E 3 HOH A 53 553 80 HOH HOH . E 3 HOH A 54 554 49 HOH HOH . E 3 HOH A 55 555 91 HOH HOH . E 3 HOH A 56 556 38 HOH HOH . E 3 HOH A 57 557 74 HOH HOH . E 3 HOH A 58 558 88 HOH HOH . E 3 HOH A 59 559 34 HOH HOH . F 3 HOH B 1 501 68 HOH HOH . F 3 HOH B 2 502 47 HOH HOH . F 3 HOH B 3 503 36 HOH HOH . F 3 HOH B 4 504 69 HOH HOH . F 3 HOH B 5 505 65 HOH HOH . F 3 HOH B 6 506 31 HOH HOH . F 3 HOH B 7 507 20 HOH HOH . F 3 HOH B 8 508 26 HOH HOH . F 3 HOH B 9 509 11 HOH HOH . F 3 HOH B 10 510 97 HOH HOH . F 3 HOH B 11 511 39 HOH HOH . F 3 HOH B 12 512 46 HOH HOH . F 3 HOH B 13 513 78 HOH HOH . F 3 HOH B 14 514 70 HOH HOH . F 3 HOH B 15 515 67 HOH HOH . F 3 HOH B 16 516 57 HOH HOH . F 3 HOH B 17 517 71 HOH HOH . F 3 HOH B 18 518 28 HOH HOH . F 3 HOH B 19 519 85 HOH HOH . F 3 HOH B 20 520 54 HOH HOH . F 3 HOH B 21 521 23 HOH HOH . F 3 HOH B 22 522 14 HOH HOH . F 3 HOH B 23 523 40 HOH HOH . F 3 HOH B 24 524 61 HOH HOH . F 3 HOH B 25 525 43 HOH HOH . F 3 HOH B 26 526 19 HOH HOH . F 3 HOH B 27 527 48 HOH HOH . F 3 HOH B 28 528 89 HOH HOH . F 3 HOH B 29 529 77 HOH HOH . F 3 HOH B 30 530 51 HOH HOH . F 3 HOH B 31 531 21 HOH HOH . F 3 HOH B 32 532 64 HOH HOH . F 3 HOH B 33 533 62 HOH HOH . F 3 HOH B 34 534 84 HOH HOH . F 3 HOH B 35 535 76 HOH HOH . F 3 HOH B 36 536 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A4D . . . C 2 -11.019 37.89 -29.187 1 41.93 ? N1 A4D 401 A 1 HETATM 2 C C2 A4D . . . C 2 -10.78 38.192 -30.512 1 40.65 ? C2 A4D 401 A 1 HETATM 3 N N3 A4D . . . C 2 -9.483 38.28 -30.973 1 42.09 ? N3 A4D 401 A 1 HETATM 4 C C4 A4D . . . C 2 -8.446 38.065 -30.125 1 44.78 ? C4 A4D 401 A 1 HETATM 5 C C5 A4D . . . C 2 -8.667 37.76 -28.791 1 43.63 ? C5 A4D 401 A 1 HETATM 6 C C6 A4D . . . C 2 -9.968 37.674 -28.32 1 44.65 ? C6 A4D 401 A 1 HETATM 7 N N6 A4D . . . C 2 -10.197 37.385 -27.042 1 42.48 ? N6 A4D 401 A 1 HETATM 8 N N7 A4D . . . C 2 -7.464 37.605 -28.194 1 46.3 ? N7 A4D 401 A 1 HETATM 9 C C8 A4D . . . C 2 -6.491 37.801 -29.112 1 44.96 ? C8 A4D 401 A 1 HETATM 10 N N9 A4D . . . C 2 -7.09 38.088 -30.31 1 45.88 ? N9 A4D 401 A 1 HETATM 11 O OAB A4D . . . C 2 -4.604 39.811 -33.71 1 46.91 ? OAB A4D 401 A 1 HETATM 12 O OAC A4D . . . C 2 -5.77 40.679 -31.637 1 40.77 ? OAC A4D 401 A 1 HETATM 13 S SAD A4D . . . C 2 -2.965 36.524 -31.172 1 67.49 ? SAD A4D 401 A 1 HETATM 14 C CAG A4D . . . C 2 -3.653 36.55 -32.844 1 53.16 ? CAG A4D 401 A 1 HETATM 15 O OAK A4D . . . C 2 -5.864 37.189 -32.131 1 49.87 ? OAK A4D 401 A 1 HETATM 16 C CAO A4D . . . C 2 -4.38 38.961 -32.61 1 49.4 ? CAO A4D 401 A 1 HETATM 17 C CAP A4D . . . C 2 -5.297 39.362 -31.474 1 45.54 ? CAP A4D 401 A 1 HETATM 18 C CAQ A4D . . . C 2 -4.797 37.546 -32.988 1 50.7 ? CAQ A4D 401 A 1 HETATM 19 C CAR A4D . . . C 2 -6.434 38.366 -31.594 1 44.37 ? CAR A4D 401 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #