data_8ZHV
#
_model_server_result.job_id            PpooDrLfRuQmmgq6hXgRzg 
_model_server_result.datetime_utc      '2025-07-24 12:31:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zhv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    8ZHV 
#
_exptl.entry_id    8ZHV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.307 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-thioadenosine" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZHV 
_cell.length_a            48.221 
_cell.length_b            76.582 
_cell.length_c            146.758 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZHV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H13 N5 O3 S' 
_chem_comp.formula_weight    283.307 
_chem_comp.id                A4D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-thioadenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 A4D doub 50 n y 
N1 C6 A4D sing 51 n y 
C2 N3 A4D sing 52 n y 
N3 C4 A4D doub 53 n y 
C4 C5 A4D sing 54 n y 
C4 N9 A4D sing 55 n y 
C5 C6 A4D doub 56 n y 
C5 N7 A4D sing 57 n y 
C6 N6 A4D sing 58 n n 
N7 C8 A4D doub 59 n y 
C8 N9 A4D sing 60 n y 
N9 CAR A4D sing 61 n n 
OAB CAO A4D sing 62 n n 
OAC CAP A4D sing 63 n n 
SAD CAG A4D sing 64 n n 
CAG CAQ A4D sing 65 n n 
OAK CAQ A4D sing 66 n n 
OAK CAR A4D sing 67 n n 
CAO CAP A4D sing 68 n n 
CAO CAQ A4D sing 69 n n 
CAP CAR A4D sing 70 n n 
C2 H2 A4D sing 71 n n 
N6 HN6 A4D sing 72 n n 
N6 HN6A A4D sing 73 n n 
C8 H8 A4D sing 74 n n 
OAB HOAB A4D sing 75 n n 
OAC HOAC A4D sing 76 n n 
SAD HSAD A4D sing 77 n n 
CAG HAG A4D sing 78 n n 
CAG HAGA A4D sing 79 n n 
CAO HAO A4D sing 80 n n 
CAP HAP A4D sing 81 n n 
CAQ HAQ A4D sing 82 n n 
CAR HAR A4D sing 83 n n 
#
_atom_sites.entry_id                     8ZHV 
_atom_sites.fract_transf_matrix[1][1]    0.020738 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013058 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006814 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 401 402 SAH SAH . 
D 3 A1L1U A 1 402 401 A1L1U DRG . 
E 4 A4D B 1 401 401 A4D SAH . 
F 3 A1L1U B 1 402 403 A1L1U DRG . 
G 5 HOH A 1 501 129 HOH HOH . 
G 5 HOH A 2 502 222 HOH HOH . 
G 5 HOH A 3 503 204 HOH HOH . 
G 5 HOH A 4 504 20 HOH HOH . 
G 5 HOH A 5 505 145 HOH HOH . 
G 5 HOH A 6 506 236 HOH HOH . 
G 5 HOH A 7 507 220 HOH HOH . 
G 5 HOH A 8 508 248 HOH HOH . 
G 5 HOH A 9 509 43 HOH HOH . 
G 5 HOH A 10 510 50 HOH HOH . 
G 5 HOH A 11 511 152 HOH HOH . 
G 5 HOH A 12 512 230 HOH HOH . 
G 5 HOH A 13 513 104 HOH HOH . 
G 5 HOH A 14 514 125 HOH HOH . 
G 5 HOH A 15 515 196 HOH HOH . 
G 5 HOH A 16 516 9 HOH HOH . 
G 5 HOH A 17 517 13 HOH HOH . 
G 5 HOH A 18 518 141 HOH HOH . 
G 5 HOH A 19 519 63 HOH HOH . 
G 5 HOH A 20 520 114 HOH HOH . 
G 5 HOH A 21 521 203 HOH HOH . 
G 5 HOH A 22 522 93 HOH HOH . 
G 5 HOH A 23 523 80 HOH HOH . 
G 5 HOH A 24 524 1 HOH HOH . 
G 5 HOH A 25 525 26 HOH HOH . 
G 5 HOH A 26 526 122 HOH HOH . 
G 5 HOH A 27 527 8 HOH HOH . 
G 5 HOH A 28 528 144 HOH HOH . 
G 5 HOH A 29 529 98 HOH HOH . 
G 5 HOH A 30 530 77 HOH HOH . 
G 5 HOH A 31 531 160 HOH HOH . 
G 5 HOH A 32 532 207 HOH HOH . 
G 5 HOH A 33 533 24 HOH HOH . 
G 5 HOH A 34 534 162 HOH HOH . 
G 5 HOH A 35 535 103 HOH HOH . 
G 5 HOH A 36 536 31 HOH HOH . 
G 5 HOH A 37 537 155 HOH HOH . 
G 5 HOH A 38 538 192 HOH HOH . 
G 5 HOH A 39 539 96 HOH HOH . 
G 5 HOH A 40 540 46 HOH HOH . 
G 5 HOH A 41 541 211 HOH HOH . 
G 5 HOH A 42 542 52 HOH HOH . 
G 5 HOH A 43 543 143 HOH HOH . 
G 5 HOH A 44 544 235 HOH HOH . 
G 5 HOH A 45 545 34 HOH HOH . 
G 5 HOH A 46 546 105 HOH HOH . 
G 5 HOH A 47 547 82 HOH HOH . 
G 5 HOH A 48 548 112 HOH HOH . 
G 5 HOH A 49 549 159 HOH HOH . 
G 5 HOH A 50 550 56 HOH HOH . 
G 5 HOH A 51 551 22 HOH HOH . 
G 5 HOH A 52 552 225 HOH HOH . 
G 5 HOH A 53 553 206 HOH HOH . 
G 5 HOH A 54 554 205 HOH HOH . 
G 5 HOH A 55 555 87 HOH HOH . 
G 5 HOH A 56 556 86 HOH HOH . 
G 5 HOH A 57 557 94 HOH HOH . 
G 5 HOH A 58 558 121 HOH HOH . 
G 5 HOH A 59 559 21 HOH HOH . 
G 5 HOH A 60 560 23 HOH HOH . 
G 5 HOH A 61 561 16 HOH HOH . 
G 5 HOH A 62 562 134 HOH HOH . 
G 5 HOH A 63 563 133 HOH HOH . 
G 5 HOH A 64 564 198 HOH HOH . 
G 5 HOH A 65 565 110 HOH HOH . 
G 5 HOH A 66 566 85 HOH HOH . 
G 5 HOH A 67 567 33 HOH HOH . 
G 5 HOH A 68 568 131 HOH HOH . 
G 5 HOH A 69 569 92 HOH HOH . 
G 5 HOH A 70 570 55 HOH HOH . 
G 5 HOH A 71 571 29 HOH HOH . 
G 5 HOH A 72 572 58 HOH HOH . 
G 5 HOH A 73 573 136 HOH HOH . 
G 5 HOH A 74 574 146 HOH HOH . 
G 5 HOH A 75 575 128 HOH HOH . 
G 5 HOH A 76 576 67 HOH HOH . 
G 5 HOH A 77 577 246 HOH HOH . 
G 5 HOH A 78 578 76 HOH HOH . 
G 5 HOH A 79 579 109 HOH HOH . 
G 5 HOH A 80 580 148 HOH HOH . 
G 5 HOH A 81 581 184 HOH HOH . 
G 5 HOH A 82 582 97 HOH HOH . 
G 5 HOH A 83 583 244 HOH HOH . 
G 5 HOH A 84 584 47 HOH HOH . 
G 5 HOH A 85 585 142 HOH HOH . 
G 5 HOH A 86 586 210 HOH HOH . 
G 5 HOH A 87 587 115 HOH HOH . 
G 5 HOH A 88 588 59 HOH HOH . 
G 5 HOH A 89 589 44 HOH HOH . 
G 5 HOH A 90 590 183 HOH HOH . 
G 5 HOH A 91 591 147 HOH HOH . 
G 5 HOH A 92 592 238 HOH HOH . 
G 5 HOH A 93 593 84 HOH HOH . 
G 5 HOH A 94 594 118 HOH HOH . 
G 5 HOH A 95 595 176 HOH HOH . 
G 5 HOH A 96 596 107 HOH HOH . 
G 5 HOH A 97 597 172 HOH HOH . 
G 5 HOH A 98 598 197 HOH HOH . 
G 5 HOH A 99 599 213 HOH HOH . 
G 5 HOH A 100 600 227 HOH HOH . 
G 5 HOH A 101 601 99 HOH HOH . 
G 5 HOH A 102 602 231 HOH HOH . 
G 5 HOH A 103 603 223 HOH HOH . 
G 5 HOH A 104 604 158 HOH HOH . 
G 5 HOH A 105 605 182 HOH HOH . 
G 5 HOH A 106 606 200 HOH HOH . 
G 5 HOH A 107 607 117 HOH HOH . 
G 5 HOH A 108 608 187 HOH HOH . 
G 5 HOH A 109 609 111 HOH HOH . 
H 5 HOH B 1 501 113 HOH HOH . 
H 5 HOH B 2 502 53 HOH HOH . 
H 5 HOH B 3 503 79 HOH HOH . 
H 5 HOH B 4 504 250 HOH HOH . 
H 5 HOH B 5 505 219 HOH HOH . 
H 5 HOH B 6 506 249 HOH HOH . 
H 5 HOH B 7 507 72 HOH HOH . 
H 5 HOH B 8 508 234 HOH HOH . 
H 5 HOH B 9 509 119 HOH HOH . 
H 5 HOH B 10 510 11 HOH HOH . 
H 5 HOH B 11 511 151 HOH HOH . 
H 5 HOH B 12 512 154 HOH HOH . 
H 5 HOH B 13 513 108 HOH HOH . 
H 5 HOH B 14 514 226 HOH HOH . 
H 5 HOH B 15 515 243 HOH HOH . 
H 5 HOH B 16 516 28 HOH HOH . 
H 5 HOH B 17 517 81 HOH HOH . 
H 5 HOH B 18 518 25 HOH HOH . 
H 5 HOH B 19 519 78 HOH HOH . 
H 5 HOH B 20 520 123 HOH HOH . 
H 5 HOH B 21 521 40 HOH HOH . 
H 5 HOH B 22 522 37 HOH HOH . 
H 5 HOH B 23 523 132 HOH HOH . 
H 5 HOH B 24 524 17 HOH HOH . 
H 5 HOH B 25 525 153 HOH HOH . 
H 5 HOH B 26 526 45 HOH HOH . 
H 5 HOH B 27 527 137 HOH HOH . 
H 5 HOH B 28 528 126 HOH HOH . 
H 5 HOH B 29 529 100 HOH HOH . 
H 5 HOH B 30 530 228 HOH HOH . 
H 5 HOH B 31 531 73 HOH HOH . 
H 5 HOH B 32 532 193 HOH HOH . 
H 5 HOH B 33 533 189 HOH HOH . 
H 5 HOH B 34 534 165 HOH HOH . 
H 5 HOH B 35 535 7 HOH HOH . 
H 5 HOH B 36 536 49 HOH HOH . 
H 5 HOH B 37 537 177 HOH HOH . 
H 5 HOH B 38 538 36 HOH HOH . 
H 5 HOH B 39 539 194 HOH HOH . 
H 5 HOH B 40 540 66 HOH HOH . 
H 5 HOH B 41 541 149 HOH HOH . 
H 5 HOH B 42 542 69 HOH HOH . 
H 5 HOH B 43 543 35 HOH HOH . 
H 5 HOH B 44 544 102 HOH HOH . 
H 5 HOH B 45 545 32 HOH HOH . 
H 5 HOH B 46 546 179 HOH HOH . 
H 5 HOH B 47 547 106 HOH HOH . 
H 5 HOH B 48 548 240 HOH HOH . 
H 5 HOH B 49 549 130 HOH HOH . 
H 5 HOH B 50 550 237 HOH HOH . 
H 5 HOH B 51 551 65 HOH HOH . 
H 5 HOH B 52 552 157 HOH HOH . 
H 5 HOH B 53 553 150 HOH HOH . 
H 5 HOH B 54 554 156 HOH HOH . 
H 5 HOH B 55 555 30 HOH HOH . 
H 5 HOH B 56 556 245 HOH HOH . 
H 5 HOH B 57 557 201 HOH HOH . 
H 5 HOH B 58 558 209 HOH HOH . 
H 5 HOH B 59 559 101 HOH HOH . 
H 5 HOH B 60 560 62 HOH HOH . 
H 5 HOH B 61 561 164 HOH HOH . 
H 5 HOH B 62 562 54 HOH HOH . 
H 5 HOH B 63 563 188 HOH HOH . 
H 5 HOH B 64 564 195 HOH HOH . 
H 5 HOH B 65 565 19 HOH HOH . 
H 5 HOH B 66 566 10 HOH HOH . 
H 5 HOH B 67 567 140 HOH HOH . 
H 5 HOH B 68 568 168 HOH HOH . 
H 5 HOH B 69 569 90 HOH HOH . 
H 5 HOH B 70 570 88 HOH HOH . 
H 5 HOH B 71 571 251 HOH HOH . 
H 5 HOH B 72 572 75 HOH HOH . 
H 5 HOH B 73 573 48 HOH HOH . 
H 5 HOH B 74 574 74 HOH HOH . 
H 5 HOH B 75 575 39 HOH HOH . 
H 5 HOH B 76 576 91 HOH HOH . 
H 5 HOH B 77 577 60 HOH HOH . 
H 5 HOH B 78 578 199 HOH HOH . 
H 5 HOH B 79 579 190 HOH HOH . 
H 5 HOH B 80 580 247 HOH HOH . 
H 5 HOH B 81 581 89 HOH HOH . 
H 5 HOH B 82 582 135 HOH HOH . 
H 5 HOH B 83 583 229 HOH HOH . 
H 5 HOH B 84 584 241 HOH HOH . 
H 5 HOH B 85 585 239 HOH HOH . 
H 5 HOH B 86 586 224 HOH HOH . 
H 5 HOH B 87 587 218 HOH HOH . 
H 5 HOH B 88 588 242 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 A4D . . . E 4 -9.669 -8.644 4.673 1 31.92 ? N1 A4D 401 B 1 
HETATM 2 C C2 A4D . . . E 4 -9.381 -7.846 5.772 1 31.14 ? C2 A4D 401 B 1 
HETATM 3 N N3 A4D . . . E 4 -8.115 -7.858 6.318 1 26.24 ? N3 A4D 401 B 1 
HETATM 4 C C4 A4D . . . E 4 -7.143 -8.643 5.786 1 33.22 ? C4 A4D 401 B 1 
HETATM 5 C C5 A4D . . . E 4 -7.405 -9.454 4.681 1 34.65 ? C5 A4D 401 B 1 
HETATM 6 C C6 A4D . . . E 4 -8.689 -9.446 4.118 1 30.67 ? C6 A4D 401 B 1 
HETATM 7 N N6 A4D . . . E 4 -8.986 -10.208 3.069 1 31.44 ? N6 A4D 401 B 1 
HETATM 8 N N7 A4D . . . E 4 -6.254 -10.113 4.378 1 31.82 ? N7 A4D 401 B 1 
HETATM 9 C C8 A4D . . . E 4 -5.281 -9.746 5.252 1 33.11 ? C8 A4D 401 B 1 
HETATM 10 N N9 A4D . . . E 4 -5.823 -8.832 6.133 1 34.81 ? N9 A4D 401 B 1 
HETATM 11 O OAB A4D . . . E 4 -4.205 -7.437 9.959 1 34.93 ? OAB A4D 401 B 1 
HETATM 12 O OAC A4D . . . E 4 -5.5 -9.659 9.145 1 33.62 ? OAC A4D 401 B 1 
HETATM 13 S SAD A4D . . . E 4 -1.099 -6.004 6.354 1 44.92 ? SAD A4D 401 B 1 
HETATM 14 C CAG A4D . . . E 4 -1.752 -7.447 7.254 1 41.49 ? CAG A4D 401 B 1 
HETATM 15 O OAK A4D . . . E 4 -4.129 -7.261 6.852 1 37.72 ? OAK A4D 401 B 1 
HETATM 16 C CAO A4D . . . E 4 -3.548 -8.174 8.947 1 39.98 ? CAO A4D 401 B 1 
HETATM 17 C CAP A4D . . . E 4 -4.538 -9.105 8.267 1 39.21 ? CAP A4D 401 B 1 
HETATM 18 C CAQ A4D . . . E 4 -3.136 -7.185 7.859 1 38.16 ? CAQ A4D 401 B 1 
HETATM 19 C CAR A4D . . . E 4 -5.166 -8.146 7.264 1 35.21 ? CAR A4D 401 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#