data_8ZHV # _model_server_result.job_id b3iIOZs3ntcRNvMCkQILfg _model_server_result.datetime_utc '2025-07-25 19:16:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 8ZHV # _exptl.entry_id 8ZHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Nocardicin G' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZHV _cell.length_a 48.221 _cell.length_b 76.582 _cell.length_c 146.758 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C19 H19 N3 O6' _chem_comp.formula_weight 385.371 _chem_comp.id A1L1U _chem_comp.mon_nstd_flag . _chem_comp.name 'Nocardicin G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2~{R})-2-[(3~{S})-3-[[(2~{R})-2-azanyl-2-(4-hydroxyphenyl)ethanoyl]amino]-2-oxidanylidene-azetidin-1-yl]-2-(4-hydroxyphenyl)ethanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N00 C01 A1L1U sing 1 n n C01 C03 A1L1U sing 2 n n C03 O04 A1L1U doub 3 n n C03 N05 A1L1U sing 4 n n N05 C06 A1L1U sing 5 n n C06 C08 A1L1U sing 6 n n C08 N09 A1L1U sing 7 n n N09 C0A A1L1U sing 8 n n C0A C0C A1L1U sing 9 n n C0C O0D A1L1U doub 10 n n C0C O0E A1L1U sing 11 n n C0A C0F A1L1U sing 12 n n C0F C0G A1L1U doub 13 n y C0G C0H A1L1U sing 14 n y C0H C0I A1L1U doub 15 n y C0I O0J A1L1U sing 16 n n C0I C0K A1L1U sing 17 n y C0F C0M A1L1U sing 18 n y C06 C0N A1L1U sing 19 n n C0N O0O A1L1U doub 20 n n C01 C0P A1L1U sing 21 n n C0P C0Q A1L1U doub 22 n y C0Q C0R A1L1U sing 23 n y C0R C0S A1L1U doub 24 n y C0S O0T A1L1U sing 25 n n C0S C0U A1L1U sing 26 n y C0P C0V A1L1U sing 27 n y N09 C0N A1L1U sing 28 n n C0K C0M A1L1U doub 29 n y C0U C0V A1L1U doub 30 n y C01 H02 A1L1U sing 31 n n C06 H07 A1L1U sing 32 n n C08 H10 A1L1U sing 33 n n C08 H0Z A1L1U sing 34 n n C0A H0B A1L1U sing 35 n n C0G H12 A1L1U sing 36 n n C0H H13 A1L1U sing 37 n n C0K H15 A1L1U sing 38 n n C0M H16 A1L1U sing 39 n n C0Q H17 A1L1U sing 40 n n C0R H18 A1L1U sing 41 n n C0U H1A A1L1U sing 42 n n C0V H1B A1L1U sing 43 n n N00 H0W A1L1U sing 44 n n N00 H1 A1L1U sing 45 n n N05 H0Y A1L1U sing 46 n n O0E H2 A1L1U sing 47 n n O0J H14 A1L1U sing 48 n n O0T H19 A1L1U sing 49 n n # _atom_sites.entry_id 8ZHV _atom_sites.fract_transf_matrix[1][1] 0.020738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 402 SAH SAH . D 3 A1L1U A 1 402 401 A1L1U DRG . E 4 A4D B 1 401 401 A4D SAH . F 3 A1L1U B 1 402 403 A1L1U DRG . G 5 HOH A 1 501 129 HOH HOH . G 5 HOH A 2 502 222 HOH HOH . G 5 HOH A 3 503 204 HOH HOH . G 5 HOH A 4 504 20 HOH HOH . G 5 HOH A 5 505 145 HOH HOH . G 5 HOH A 6 506 236 HOH HOH . G 5 HOH A 7 507 220 HOH HOH . G 5 HOH A 8 508 248 HOH HOH . G 5 HOH A 9 509 43 HOH HOH . G 5 HOH A 10 510 50 HOH HOH . G 5 HOH A 11 511 152 HOH HOH . G 5 HOH A 12 512 230 HOH HOH . G 5 HOH A 13 513 104 HOH HOH . G 5 HOH A 14 514 125 HOH HOH . G 5 HOH A 15 515 196 HOH HOH . G 5 HOH A 16 516 9 HOH HOH . G 5 HOH A 17 517 13 HOH HOH . G 5 HOH A 18 518 141 HOH HOH . G 5 HOH A 19 519 63 HOH HOH . G 5 HOH A 20 520 114 HOH HOH . G 5 HOH A 21 521 203 HOH HOH . G 5 HOH A 22 522 93 HOH HOH . G 5 HOH A 23 523 80 HOH HOH . G 5 HOH A 24 524 1 HOH HOH . G 5 HOH A 25 525 26 HOH HOH . G 5 HOH A 26 526 122 HOH HOH . G 5 HOH A 27 527 8 HOH HOH . G 5 HOH A 28 528 144 HOH HOH . G 5 HOH A 29 529 98 HOH HOH . G 5 HOH A 30 530 77 HOH HOH . G 5 HOH A 31 531 160 HOH HOH . G 5 HOH A 32 532 207 HOH HOH . G 5 HOH A 33 533 24 HOH HOH . G 5 HOH A 34 534 162 HOH HOH . G 5 HOH A 35 535 103 HOH HOH . G 5 HOH A 36 536 31 HOH HOH . G 5 HOH A 37 537 155 HOH HOH . G 5 HOH A 38 538 192 HOH HOH . G 5 HOH A 39 539 96 HOH HOH . G 5 HOH A 40 540 46 HOH HOH . G 5 HOH A 41 541 211 HOH HOH . G 5 HOH A 42 542 52 HOH HOH . G 5 HOH A 43 543 143 HOH HOH . G 5 HOH A 44 544 235 HOH HOH . G 5 HOH A 45 545 34 HOH HOH . G 5 HOH A 46 546 105 HOH HOH . G 5 HOH A 47 547 82 HOH HOH . G 5 HOH A 48 548 112 HOH HOH . G 5 HOH A 49 549 159 HOH HOH . G 5 HOH A 50 550 56 HOH HOH . G 5 HOH A 51 551 22 HOH HOH . G 5 HOH A 52 552 225 HOH HOH . G 5 HOH A 53 553 206 HOH HOH . G 5 HOH A 54 554 205 HOH HOH . G 5 HOH A 55 555 87 HOH HOH . G 5 HOH A 56 556 86 HOH HOH . G 5 HOH A 57 557 94 HOH HOH . G 5 HOH A 58 558 121 HOH HOH . G 5 HOH A 59 559 21 HOH HOH . G 5 HOH A 60 560 23 HOH HOH . G 5 HOH A 61 561 16 HOH HOH . G 5 HOH A 62 562 134 HOH HOH . G 5 HOH A 63 563 133 HOH HOH . G 5 HOH A 64 564 198 HOH HOH . G 5 HOH A 65 565 110 HOH HOH . G 5 HOH A 66 566 85 HOH HOH . G 5 HOH A 67 567 33 HOH HOH . G 5 HOH A 68 568 131 HOH HOH . G 5 HOH A 69 569 92 HOH HOH . G 5 HOH A 70 570 55 HOH HOH . G 5 HOH A 71 571 29 HOH HOH . G 5 HOH A 72 572 58 HOH HOH . G 5 HOH A 73 573 136 HOH HOH . G 5 HOH A 74 574 146 HOH HOH . G 5 HOH A 75 575 128 HOH HOH . G 5 HOH A 76 576 67 HOH HOH . G 5 HOH A 77 577 246 HOH HOH . G 5 HOH A 78 578 76 HOH HOH . G 5 HOH A 79 579 109 HOH HOH . G 5 HOH A 80 580 148 HOH HOH . G 5 HOH A 81 581 184 HOH HOH . G 5 HOH A 82 582 97 HOH HOH . G 5 HOH A 83 583 244 HOH HOH . G 5 HOH A 84 584 47 HOH HOH . G 5 HOH A 85 585 142 HOH HOH . G 5 HOH A 86 586 210 HOH HOH . G 5 HOH A 87 587 115 HOH HOH . G 5 HOH A 88 588 59 HOH HOH . G 5 HOH A 89 589 44 HOH HOH . G 5 HOH A 90 590 183 HOH HOH . G 5 HOH A 91 591 147 HOH HOH . G 5 HOH A 92 592 238 HOH HOH . G 5 HOH A 93 593 84 HOH HOH . G 5 HOH A 94 594 118 HOH HOH . G 5 HOH A 95 595 176 HOH HOH . G 5 HOH A 96 596 107 HOH HOH . G 5 HOH A 97 597 172 HOH HOH . G 5 HOH A 98 598 197 HOH HOH . G 5 HOH A 99 599 213 HOH HOH . G 5 HOH A 100 600 227 HOH HOH . G 5 HOH A 101 601 99 HOH HOH . G 5 HOH A 102 602 231 HOH HOH . G 5 HOH A 103 603 223 HOH HOH . G 5 HOH A 104 604 158 HOH HOH . G 5 HOH A 105 605 182 HOH HOH . G 5 HOH A 106 606 200 HOH HOH . G 5 HOH A 107 607 117 HOH HOH . G 5 HOH A 108 608 187 HOH HOH . G 5 HOH A 109 609 111 HOH HOH . H 5 HOH B 1 501 113 HOH HOH . H 5 HOH B 2 502 53 HOH HOH . H 5 HOH B 3 503 79 HOH HOH . H 5 HOH B 4 504 250 HOH HOH . H 5 HOH B 5 505 219 HOH HOH . H 5 HOH B 6 506 249 HOH HOH . H 5 HOH B 7 507 72 HOH HOH . H 5 HOH B 8 508 234 HOH HOH . H 5 HOH B 9 509 119 HOH HOH . H 5 HOH B 10 510 11 HOH HOH . H 5 HOH B 11 511 151 HOH HOH . H 5 HOH B 12 512 154 HOH HOH . H 5 HOH B 13 513 108 HOH HOH . H 5 HOH B 14 514 226 HOH HOH . H 5 HOH B 15 515 243 HOH HOH . H 5 HOH B 16 516 28 HOH HOH . H 5 HOH B 17 517 81 HOH HOH . H 5 HOH B 18 518 25 HOH HOH . H 5 HOH B 19 519 78 HOH HOH . H 5 HOH B 20 520 123 HOH HOH . H 5 HOH B 21 521 40 HOH HOH . H 5 HOH B 22 522 37 HOH HOH . H 5 HOH B 23 523 132 HOH HOH . H 5 HOH B 24 524 17 HOH HOH . H 5 HOH B 25 525 153 HOH HOH . H 5 HOH B 26 526 45 HOH HOH . H 5 HOH B 27 527 137 HOH HOH . H 5 HOH B 28 528 126 HOH HOH . H 5 HOH B 29 529 100 HOH HOH . H 5 HOH B 30 530 228 HOH HOH . H 5 HOH B 31 531 73 HOH HOH . H 5 HOH B 32 532 193 HOH HOH . H 5 HOH B 33 533 189 HOH HOH . H 5 HOH B 34 534 165 HOH HOH . H 5 HOH B 35 535 7 HOH HOH . H 5 HOH B 36 536 49 HOH HOH . H 5 HOH B 37 537 177 HOH HOH . H 5 HOH B 38 538 36 HOH HOH . H 5 HOH B 39 539 194 HOH HOH . H 5 HOH B 40 540 66 HOH HOH . H 5 HOH B 41 541 149 HOH HOH . H 5 HOH B 42 542 69 HOH HOH . H 5 HOH B 43 543 35 HOH HOH . H 5 HOH B 44 544 102 HOH HOH . H 5 HOH B 45 545 32 HOH HOH . H 5 HOH B 46 546 179 HOH HOH . H 5 HOH B 47 547 106 HOH HOH . H 5 HOH B 48 548 240 HOH HOH . H 5 HOH B 49 549 130 HOH HOH . H 5 HOH B 50 550 237 HOH HOH . H 5 HOH B 51 551 65 HOH HOH . H 5 HOH B 52 552 157 HOH HOH . H 5 HOH B 53 553 150 HOH HOH . H 5 HOH B 54 554 156 HOH HOH . H 5 HOH B 55 555 30 HOH HOH . H 5 HOH B 56 556 245 HOH HOH . H 5 HOH B 57 557 201 HOH HOH . H 5 HOH B 58 558 209 HOH HOH . H 5 HOH B 59 559 101 HOH HOH . H 5 HOH B 60 560 62 HOH HOH . H 5 HOH B 61 561 164 HOH HOH . H 5 HOH B 62 562 54 HOH HOH . H 5 HOH B 63 563 188 HOH HOH . H 5 HOH B 64 564 195 HOH HOH . H 5 HOH B 65 565 19 HOH HOH . H 5 HOH B 66 566 10 HOH HOH . H 5 HOH B 67 567 140 HOH HOH . H 5 HOH B 68 568 168 HOH HOH . H 5 HOH B 69 569 90 HOH HOH . H 5 HOH B 70 570 88 HOH HOH . H 5 HOH B 71 571 251 HOH HOH . H 5 HOH B 72 572 75 HOH HOH . H 5 HOH B 73 573 48 HOH HOH . H 5 HOH B 74 574 74 HOH HOH . H 5 HOH B 75 575 39 HOH HOH . H 5 HOH B 76 576 91 HOH HOH . H 5 HOH B 77 577 60 HOH HOH . H 5 HOH B 78 578 199 HOH HOH . H 5 HOH B 79 579 190 HOH HOH . H 5 HOH B 80 580 247 HOH HOH . H 5 HOH B 81 581 89 HOH HOH . H 5 HOH B 82 582 135 HOH HOH . H 5 HOH B 83 583 229 HOH HOH . H 5 HOH B 84 584 241 HOH HOH . H 5 HOH B 85 585 239 HOH HOH . H 5 HOH B 86 586 224 HOH HOH . H 5 HOH B 87 587 218 HOH HOH . H 5 HOH B 88 588 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 A1L1U . . . F 3 6.121 -10.702 7.313 1 31.29 ? C01 A1L1U 402 B 1 HETATM 2 C C03 A1L1U . . . F 3 7.011 -11.231 6.193 1 37.21 ? C03 A1L1U 402 B 1 HETATM 3 C C06 A1L1U . . . F 3 9.139 -10.946 4.828 1 32.01 ? C06 A1L1U 402 B 1 HETATM 4 C C08 A1L1U . . . F 3 9.1 -9.944 3.414 1 34.7 ? C08 A1L1U 402 B 1 HETATM 5 C C0A A1L1U . . . F 3 11.67 -8.968 3.829 1 31.32 ? C0A A1L1U 402 B 1 HETATM 6 C C0C A1L1U . . . F 3 12.547 -9.756 2.854 1 31.31 ? C0C A1L1U 402 B 1 HETATM 7 C C0F A1L1U . . . F 3 11.137 -7.682 3.182 1 31.66 ? C0F A1L1U 402 B 1 HETATM 8 C C0G A1L1U . . . F 3 11.276 -7.448 1.799 1 30.59 ? C0G A1L1U 402 B 1 HETATM 9 C C0H A1L1U . . . F 3 10.77 -6.253 1.238 1 26.53 ? C0H A1L1U 402 B 1 HETATM 10 C C0I A1L1U . . . F 3 10.113 -5.309 2.053 1 27.37 ? C0I A1L1U 402 B 1 HETATM 11 C C0K A1L1U . . . F 3 9.965 -5.566 3.423 1 24.99 ? C0K A1L1U 402 B 1 HETATM 12 C C0M A1L1U . . . F 3 10.475 -6.741 3.988 1 27.11 ? C0M A1L1U 402 B 1 HETATM 13 C C0N A1L1U . . . F 3 10.321 -10.556 5.091 1 33.11 ? C0N A1L1U 402 B 1 HETATM 14 C C0P A1L1U . . . F 3 5.354 -9.441 6.881 1 32.52 ? C0P A1L1U 402 B 1 HETATM 15 C C0Q A1L1U . . . F 3 5.258 -8.32 7.73 1 32.82 ? C0Q A1L1U 402 B 1 HETATM 16 C C0R A1L1U . . . F 3 4.546 -7.173 7.348 1 33.54 ? C0R A1L1U 402 B 1 HETATM 17 C C0S A1L1U . . . F 3 3.914 -7.125 6.113 1 34.99 ? C0S A1L1U 402 B 1 HETATM 18 C C0U A1L1U . . . F 3 3.997 -8.219 5.261 1 35.45 ? C0U A1L1U 402 B 1 HETATM 19 C C0V A1L1U . . . F 3 4.706 -9.373 5.634 1 31.15 ? C0V A1L1U 402 B 1 HETATM 20 N N00 A1L1U . . . F 3 5.159 -11.749 7.58 1 38.82 ? N00 A1L1U 402 B 1 HETATM 21 N N05 A1L1U . . . F 3 8.246 -10.508 5.864 1 34.59 ? N05 A1L1U 402 B 1 HETATM 22 N N09 A1L1U . . . F 3 10.504 -9.785 4.182 1 33.17 ? N09 A1L1U 402 B 1 HETATM 23 O O04 A1L1U . . . F 3 6.695 -12.213 5.603 1 32.46 ? O04 A1L1U 402 B 1 HETATM 24 O O0D A1L1U . . . F 3 13.71 -9.379 2.519 1 30.85 ? O0D A1L1U 402 B 1 HETATM 25 O O0E A1L1U . . . F 3 12.088 -10.815 2.355 1 30.99 -1 O0E A1L1U 402 B 1 HETATM 26 O O0J A1L1U . . . F 3 9.582 -4.116 1.495 1 22.16 ? O0J A1L1U 402 B 1 HETATM 27 O O0O A1L1U . . . F 3 11.02 -10.858 6.007 1 35.41 ? O0O A1L1U 402 B 1 HETATM 28 O O0T A1L1U . . . F 3 3.206 -5.956 5.717 1 32.37 ? O0T A1L1U 402 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #