data_8ZI8
#
_model_server_result.job_id            hKA6cltD7tQjzeKMnlZXsw 
_model_server_result.datetime_utc      '2024-12-21 15:42:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zi8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":403}' 
#
_entry.id    8ZI8 
#
_exptl.entry_id    8ZI8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZI8 
_cell.length_a            86.549 
_cell.length_b            94.717 
_cell.length_c            166.714 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZI8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
D,I,J,K,L,M,N,R 1 1 
A,E,F,G,O 1 2 
B,C,H,P,Q 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_654 -x+1,-y+1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 86.549 47.3585 -83.357 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 179 A HIS 159 1_555 G ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc2 A NE2 HIS 223 A HIS 203 1_555 M ZN ZN . D ZN 405 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc3 A NE2 HIS 275 A HIS 255 1_555 G ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc4 F OAB GTQ . A GTQ 402 1_555 G ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc5 G ZN ZN . A ZN 403 4_654 D NE2 HIS 223 D HIS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc6 B NE2 HIS 223 B HIS 203 1_555 H ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc7 C NE2 HIS 275 C HIS 255 1_555 H ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc8 D NE2 HIS 179 D HIS 159 1_555 M ZN ZN . D ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc9 D NE2 HIS 275 D HIS 255 1_555 M ZN ZN . D ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc10 I OAA GTQ . D GTQ 401 1_555 M ZN ZN . D ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 85 n n 
C1 C2 EDO sing 86 n n 
C1 H11 EDO sing 87 n n 
C1 H12 EDO sing 88 n n 
O1 HO1 EDO sing 89 n n 
C2 O2 EDO sing 90 n n 
C2 H21 EDO sing 91 n n 
C2 H22 EDO sing 92 n n 
O2 HO2 EDO sing 93 n n 
#
_atom_sites.entry_id                     8ZI8 
_atom_sites.fract_transf_matrix[1][1]    0.011554 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005998 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CO2 A 1 401 404 CO2 CO2 . 
F 3 GTQ A 1 402 409 GTQ LIG . 
G 4 ZN A 1 403 1 ZN ZN . 
H 4 ZN C 1 401 3 ZN ZN . 
I 3 GTQ D 1 401 403 GTQ LIG . 
J 2 CO2 D 1 402 404 CO2 CO2 . 
K 5 EDO D 1 403 406 EDO EDO . 
L 5 EDO D 1 404 407 EDO EDO . 
M 4 ZN D 1 405 4 ZN ZN . 
N 6 CL D 1 406 2 CL CL . 
O 7 HOH A 1 501 178 HOH HOH . 
O 7 HOH A 2 502 4 HOH HOH . 
O 7 HOH A 3 503 58 HOH HOH . 
O 7 HOH A 4 504 66 HOH HOH . 
O 7 HOH A 5 505 39 HOH HOH . 
O 7 HOH A 6 506 75 HOH HOH . 
O 7 HOH A 7 507 50 HOH HOH . 
O 7 HOH A 8 508 112 HOH HOH . 
O 7 HOH A 9 509 84 HOH HOH . 
O 7 HOH A 10 510 89 HOH HOH . 
O 7 HOH A 11 511 69 HOH HOH . 
O 7 HOH A 12 512 102 HOH HOH . 
O 7 HOH A 13 513 23 HOH HOH . 
O 7 HOH A 14 514 79 HOH HOH . 
O 7 HOH A 15 515 93 HOH HOH . 
O 7 HOH A 16 516 117 HOH HOH . 
O 7 HOH A 17 517 92 HOH HOH . 
O 7 HOH A 18 518 191 HOH HOH . 
O 7 HOH A 19 519 21 HOH HOH . 
O 7 HOH A 20 520 164 HOH HOH . 
O 7 HOH A 21 521 90 HOH HOH . 
O 7 HOH A 22 522 64 HOH HOH . 
O 7 HOH A 23 523 119 HOH HOH . 
O 7 HOH A 24 524 180 HOH HOH . 
O 7 HOH A 25 525 5 HOH HOH . 
O 7 HOH A 26 526 29 HOH HOH . 
O 7 HOH A 27 527 173 HOH HOH . 
O 7 HOH A 28 528 85 HOH HOH . 
O 7 HOH A 29 529 111 HOH HOH . 
O 7 HOH A 30 530 116 HOH HOH . 
O 7 HOH A 31 531 59 HOH HOH . 
O 7 HOH A 32 532 80 HOH HOH . 
O 7 HOH A 33 533 49 HOH HOH . 
O 7 HOH A 34 534 26 HOH HOH . 
O 7 HOH A 35 535 32 HOH HOH . 
O 7 HOH A 36 536 189 HOH HOH . 
O 7 HOH A 37 537 91 HOH HOH . 
O 7 HOH A 38 538 24 HOH HOH . 
O 7 HOH A 39 539 18 HOH HOH . 
O 7 HOH A 40 540 110 HOH HOH . 
O 7 HOH A 41 541 170 HOH HOH . 
O 7 HOH A 42 542 86 HOH HOH . 
O 7 HOH A 43 543 121 HOH HOH . 
O 7 HOH A 44 544 17 HOH HOH . 
O 7 HOH A 45 545 7 HOH HOH . 
O 7 HOH A 46 546 22 HOH HOH . 
O 7 HOH A 47 547 172 HOH HOH . 
O 7 HOH A 48 548 103 HOH HOH . 
O 7 HOH A 49 549 163 HOH HOH . 
O 7 HOH A 50 550 190 HOH HOH . 
O 7 HOH A 51 551 167 HOH HOH . 
O 7 HOH A 52 552 184 HOH HOH . 
O 7 HOH A 53 553 162 HOH HOH . 
O 7 HOH A 54 554 94 HOH HOH . 
P 7 HOH B 1 401 45 HOH HOH . 
P 7 HOH B 2 402 124 HOH HOH . 
P 7 HOH B 3 403 132 HOH HOH . 
P 7 HOH B 4 404 126 HOH HOH . 
P 7 HOH B 5 405 60 HOH HOH . 
P 7 HOH B 6 406 31 HOH HOH . 
P 7 HOH B 7 407 127 HOH HOH . 
P 7 HOH B 8 408 123 HOH HOH . 
P 7 HOH B 9 409 128 HOH HOH . 
P 7 HOH B 10 410 76 HOH HOH . 
P 7 HOH B 11 411 30 HOH HOH . 
P 7 HOH B 12 412 185 HOH HOH . 
P 7 HOH B 13 413 42 HOH HOH . 
P 7 HOH B 14 414 70 HOH HOH . 
P 7 HOH B 15 415 118 HOH HOH . 
Q 7 HOH C 1 501 193 HOH HOH . 
Q 7 HOH C 2 502 159 HOH HOH . 
Q 7 HOH C 3 503 135 HOH HOH . 
Q 7 HOH C 4 504 37 HOH HOH . 
Q 7 HOH C 5 505 33 HOH HOH . 
Q 7 HOH C 6 506 72 HOH HOH . 
Q 7 HOH C 7 507 133 HOH HOH . 
Q 7 HOH C 8 508 44 HOH HOH . 
Q 7 HOH C 9 509 194 HOH HOH . 
Q 7 HOH C 10 510 154 HOH HOH . 
R 7 HOH D 1 501 14 HOH HOH . 
R 7 HOH D 2 502 152 HOH HOH . 
R 7 HOH D 3 503 142 HOH HOH . 
R 7 HOH D 4 504 99 HOH HOH . 
R 7 HOH D 5 505 141 HOH HOH . 
R 7 HOH D 6 506 188 HOH HOH . 
R 7 HOH D 7 507 183 HOH HOH . 
R 7 HOH D 8 508 57 HOH HOH . 
R 7 HOH D 9 509 20 HOH HOH . 
R 7 HOH D 10 510 95 HOH HOH . 
R 7 HOH D 11 511 144 HOH HOH . 
R 7 HOH D 12 512 71 HOH HOH . 
R 7 HOH D 13 513 156 HOH HOH . 
R 7 HOH D 14 514 150 HOH HOH . 
R 7 HOH D 15 515 108 HOH HOH . 
R 7 HOH D 16 516 78 HOH HOH . 
R 7 HOH D 17 517 25 HOH HOH . 
R 7 HOH D 18 518 148 HOH HOH . 
R 7 HOH D 19 519 192 HOH HOH . 
R 7 HOH D 20 520 35 HOH HOH . 
R 7 HOH D 21 521 28 HOH HOH . 
R 7 HOH D 22 522 143 HOH HOH . 
R 7 HOH D 23 523 140 HOH HOH . 
R 7 HOH D 24 524 2 HOH HOH . 
R 7 HOH D 25 525 77 HOH HOH . 
R 7 HOH D 26 526 9 HOH HOH . 
R 7 HOH D 27 527 10 HOH HOH . 
R 7 HOH D 28 528 54 HOH HOH . 
R 7 HOH D 29 529 158 HOH HOH . 
R 7 HOH D 30 530 41 HOH HOH . 
R 7 HOH D 31 531 179 HOH HOH . 
R 7 HOH D 32 532 36 HOH HOH . 
R 7 HOH D 33 533 34 HOH HOH . 
R 7 HOH D 34 534 13 HOH HOH . 
R 7 HOH D 35 535 187 HOH HOH . 
R 7 HOH D 36 536 147 HOH HOH . 
R 7 HOH D 37 537 181 HOH HOH . 
R 7 HOH D 38 538 100 HOH HOH . 
R 7 HOH D 39 539 160 HOH HOH . 
R 7 HOH D 40 540 109 HOH HOH . 
R 7 HOH D 41 541 151 HOH HOH . 
R 7 HOH D 42 542 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 5 41.216 4.517 -47.088 1 8.4 ? C1 EDO 403 D 1 
HETATM 2 O O1 EDO . . . K 5 42.542 4.764 -46.611 1 7.82 ? O1 EDO 403 D 1 
HETATM 3 C C2 EDO . . . K 5 40.955 4.986 -48.488 1 8.75 ? C2 EDO 403 D 1 
HETATM 4 O O2 EDO . . . K 5 39.711 5.665 -48.667 1 8.77 ? O2 EDO 403 D 1 
HETATM 5 H H11 EDO . . . K 5 40.58 4.96 -46.488 1 8.29 ? H11 EDO 403 D 1 
HETATM 6 H H12 EDO . . . K 5 41.043 3.553 -47.046 1 8.3 ? H12 EDO 403 D 1 
HETATM 7 H HO1 EDO . . . K 5 42.61 4.473 -45.83 0 30 ? HO1 EDO 403 D 1 
HETATM 8 H H21 EDO . . . K 5 40.978 4.21 -49.086 1 8.67 ? H21 EDO 403 D 1 
HETATM 9 H H22 EDO . . . K 5 41.681 5.589 -48.754 1 8.64 ? H22 EDO 403 D 1 
HETATM 10 H HO2 EDO . . . K 5 39.637 5.9 -49.479 0 30 ? HO2 EDO 403 D 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#