data_8ZIC # _model_server_result.job_id iSEa1oWb5Ehu6ZysAq6EIQ _model_server_result.datetime_utc '2025-08-24 15:46:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8ZIC # _exptl.entry_id 8ZIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.216 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1H-INDOL-3-YL)ETHANAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZIC _cell.length_a 100.205 _cell.length_b 100.205 _cell.length_c 76.385 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 109 A ASP 109 1_555 F CA CA . A CA 405 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 A OD2 ASP 109 A ASP 109 1_555 F CA CA . A CA 405 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc3 A OE1 GLU 111 A GLU 111 1_555 F CA CA . A CA 405 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc4 A OE2 GLU 111 A GLU 111 1_555 F CA CA . A CA 405 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc5 A OD1 ASN 229 A ASN 229 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 A OD2 ASP 249 A ASP 249 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc7 A OD1 ASP 249 A ASP 249 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc8 A OD2 ASP 249 A ASP 249 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc9 A OE2 GLU 251 A GLU 251 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc10 C O3B ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc11 C O2A ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc12 C O2B ADP . A ADP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? # _chem_comp.formula 'C10 H12 N2' _chem_comp.formula_weight 160.216 _chem_comp.id TSS _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1H-INDOL-3-YL)ETHANAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TRYPTAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA TSS sing 378 n n N1 HN11 TSS sing 379 n n N1 HN12 TSS sing 380 n n CA CB TSS sing 381 n n CA HA1 TSS sing 382 n n CA HA2 TSS sing 383 n n CB CG TSS sing 384 n n CB HB1 TSS sing 385 n n CB HB2 TSS sing 386 n n CG CD1 TSS doub 387 n y CG CD2 TSS sing 388 n y CD1 NE1 TSS sing 389 n y CD1 HD1 TSS sing 390 n n NE1 CE2 TSS sing 391 n y NE1 HE1 TSS sing 392 n n CE2 CD2 TSS sing 393 n y CE2 CZ2 TSS doub 394 n y CD2 CE3 TSS doub 395 n y CZ2 CH2 TSS sing 396 n y CZ2 HZ2 TSS sing 397 n n CH2 CZ3 TSS doub 398 n y CH2 HH2 TSS sing 399 n n CZ3 CE3 TSS sing 400 n y CZ3 HZ3 TSS sing 401 n n CE3 HE3 TSS sing 402 n n # _atom_sites.entry_id 8ZIC _atom_sites.fract_transf_matrix[1][1] 0.00998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TSS A 1 401 401 TSS TSS . C 3 ADP A 1 402 401 ADP ADP . D 4 MG A 1 403 1 MG MG . E 4 MG A 1 404 2 MG MG . F 5 CA A 1 405 1 CA CA . G 6 HOH A 1 501 336 HOH HOH . G 6 HOH A 2 502 507 HOH HOH . G 6 HOH A 3 503 167 HOH HOH . G 6 HOH A 4 504 153 HOH HOH . G 6 HOH A 5 505 1332 HOH HOH . G 6 HOH A 6 506 26 HOH HOH . G 6 HOH A 7 507 845 HOH HOH . G 6 HOH A 8 508 135 HOH HOH . G 6 HOH A 9 509 129 HOH HOH . G 6 HOH A 10 510 6 HOH HOH . G 6 HOH A 11 511 17 HOH HOH . G 6 HOH A 12 512 113 HOH HOH . G 6 HOH A 13 513 1119 HOH HOH . G 6 HOH A 14 514 326 HOH HOH . G 6 HOH A 15 515 43 HOH HOH . G 6 HOH A 16 516 128 HOH HOH . G 6 HOH A 17 517 178 HOH HOH . G 6 HOH A 18 518 180 HOH HOH . G 6 HOH A 19 519 158 HOH HOH . G 6 HOH A 20 520 11 HOH HOH . G 6 HOH A 21 521 321 HOH HOH . G 6 HOH A 22 522 632 HOH HOH . G 6 HOH A 23 523 120 HOH HOH . G 6 HOH A 24 524 12 HOH HOH . G 6 HOH A 25 525 368 HOH HOH . G 6 HOH A 26 526 9 HOH HOH . G 6 HOH A 27 527 29 HOH HOH . G 6 HOH A 28 528 117 HOH HOH . G 6 HOH A 29 529 1137 HOH HOH . G 6 HOH A 30 530 229 HOH HOH . G 6 HOH A 31 531 318 HOH HOH . G 6 HOH A 32 532 53 HOH HOH . G 6 HOH A 33 533 118 HOH HOH . G 6 HOH A 34 534 27 HOH HOH . G 6 HOH A 35 535 23 HOH HOH . G 6 HOH A 36 536 36 HOH HOH . G 6 HOH A 37 537 57 HOH HOH . G 6 HOH A 38 538 724 HOH HOH . G 6 HOH A 39 539 148 HOH HOH . G 6 HOH A 40 540 162 HOH HOH . G 6 HOH A 41 541 156 HOH HOH . G 6 HOH A 42 542 112 HOH HOH . G 6 HOH A 43 543 15 HOH HOH . G 6 HOH A 44 544 1235 HOH HOH . G 6 HOH A 45 545 176 HOH HOH . G 6 HOH A 46 546 137 HOH HOH . G 6 HOH A 47 547 535 HOH HOH . G 6 HOH A 48 548 89 HOH HOH . G 6 HOH A 49 549 16 HOH HOH . G 6 HOH A 50 550 21 HOH HOH . G 6 HOH A 51 551 390 HOH HOH . G 6 HOH A 52 552 327 HOH HOH . G 6 HOH A 53 553 140 HOH HOH . G 6 HOH A 54 554 24 HOH HOH . G 6 HOH A 55 555 155 HOH HOH . G 6 HOH A 56 556 14 HOH HOH . G 6 HOH A 57 557 189 HOH HOH . G 6 HOH A 58 558 13 HOH HOH . G 6 HOH A 59 559 130 HOH HOH . G 6 HOH A 60 560 90 HOH HOH . G 6 HOH A 61 561 73 HOH HOH . G 6 HOH A 62 562 993 HOH HOH . G 6 HOH A 63 563 7 HOH HOH . G 6 HOH A 64 564 35 HOH HOH . G 6 HOH A 65 565 31 HOH HOH . G 6 HOH A 66 566 49 HOH HOH . G 6 HOH A 67 567 496 HOH HOH . G 6 HOH A 68 568 225 HOH HOH . G 6 HOH A 69 569 606 HOH HOH . G 6 HOH A 70 570 127 HOH HOH . G 6 HOH A 71 571 540 HOH HOH . G 6 HOH A 72 572 39 HOH HOH . G 6 HOH A 73 573 71 HOH HOH . G 6 HOH A 74 574 48 HOH HOH . G 6 HOH A 75 575 81 HOH HOH . G 6 HOH A 76 576 63 HOH HOH . G 6 HOH A 77 577 677 HOH HOH . G 6 HOH A 78 578 265 HOH HOH . G 6 HOH A 79 579 8 HOH HOH . G 6 HOH A 80 580 144 HOH HOH . G 6 HOH A 81 581 202 HOH HOH . G 6 HOH A 82 582 652 HOH HOH . G 6 HOH A 83 583 5 HOH HOH . G 6 HOH A 84 584 149 HOH HOH . G 6 HOH A 85 585 70 HOH HOH . G 6 HOH A 86 586 40 HOH HOH . G 6 HOH A 87 587 211 HOH HOH . G 6 HOH A 88 588 536 HOH HOH . G 6 HOH A 89 589 191 HOH HOH . G 6 HOH A 90 590 46 HOH HOH . G 6 HOH A 91 591 51 HOH HOH . G 6 HOH A 92 592 124 HOH HOH . G 6 HOH A 93 593 320 HOH HOH . G 6 HOH A 94 594 25 HOH HOH . G 6 HOH A 95 595 754 HOH HOH . G 6 HOH A 96 596 403 HOH HOH . G 6 HOH A 97 597 10 HOH HOH . G 6 HOH A 98 598 150 HOH HOH . G 6 HOH A 99 599 78 HOH HOH . G 6 HOH A 100 600 173 HOH HOH . G 6 HOH A 101 601 52 HOH HOH . G 6 HOH A 102 602 405 HOH HOH . G 6 HOH A 103 603 204 HOH HOH . G 6 HOH A 104 604 500 HOH HOH . G 6 HOH A 105 605 34 HOH HOH . G 6 HOH A 106 606 147 HOH HOH . G 6 HOH A 107 607 134 HOH HOH . G 6 HOH A 108 608 116 HOH HOH . G 6 HOH A 109 609 335 HOH HOH . G 6 HOH A 110 610 245 HOH HOH . G 6 HOH A 111 611 736 HOH HOH . G 6 HOH A 112 612 1225 HOH HOH . G 6 HOH A 113 613 74 HOH HOH . G 6 HOH A 114 614 33 HOH HOH . G 6 HOH A 115 615 504 HOH HOH . G 6 HOH A 116 616 346 HOH HOH . G 6 HOH A 117 617 82 HOH HOH . G 6 HOH A 118 618 69 HOH HOH . G 6 HOH A 119 619 709 HOH HOH . G 6 HOH A 120 620 322 HOH HOH . G 6 HOH A 121 621 1429 HOH HOH . G 6 HOH A 122 622 152 HOH HOH . G 6 HOH A 123 623 91 HOH HOH . G 6 HOH A 124 624 1114 HOH HOH . G 6 HOH A 125 625 170 HOH HOH . G 6 HOH A 126 626 106 HOH HOH . G 6 HOH A 127 627 185 HOH HOH . G 6 HOH A 128 628 221 HOH HOH . G 6 HOH A 129 629 685 HOH HOH . G 6 HOH A 130 630 20 HOH HOH . G 6 HOH A 131 631 88 HOH HOH . G 6 HOH A 132 632 184 HOH HOH . G 6 HOH A 133 633 235 HOH HOH . G 6 HOH A 134 634 892 HOH HOH . G 6 HOH A 135 635 172 HOH HOH . G 6 HOH A 136 636 45 HOH HOH . G 6 HOH A 137 637 30 HOH HOH . G 6 HOH A 138 638 979 HOH HOH . G 6 HOH A 139 639 501 HOH HOH . G 6 HOH A 140 640 1120 HOH HOH . G 6 HOH A 141 641 893 HOH HOH . G 6 HOH A 142 642 678 HOH HOH . G 6 HOH A 143 643 223 HOH HOH . G 6 HOH A 144 644 1115 HOH HOH . G 6 HOH A 145 645 2 HOH HOH . G 6 HOH A 146 646 64 HOH HOH . G 6 HOH A 147 647 109 HOH HOH . G 6 HOH A 148 648 1121 HOH HOH . G 6 HOH A 149 649 132 HOH HOH . G 6 HOH A 150 650 1327 HOH HOH . G 6 HOH A 151 651 217 HOH HOH . G 6 HOH A 152 652 56 HOH HOH . G 6 HOH A 153 653 163 HOH HOH . G 6 HOH A 154 654 576 HOH HOH . G 6 HOH A 155 655 627 HOH HOH . G 6 HOH A 156 656 711 HOH HOH . G 6 HOH A 157 657 626 HOH HOH . G 6 HOH A 158 658 372 HOH HOH . G 6 HOH A 159 659 1051 HOH HOH . G 6 HOH A 160 660 119 HOH HOH . G 6 HOH A 161 661 207 HOH HOH . G 6 HOH A 162 662 776 HOH HOH . G 6 HOH A 163 663 350 HOH HOH . G 6 HOH A 164 664 154 HOH HOH . G 6 HOH A 165 665 876 HOH HOH . G 6 HOH A 166 666 827 HOH HOH . G 6 HOH A 167 667 114 HOH HOH . G 6 HOH A 168 668 846 HOH HOH . G 6 HOH A 169 669 145 HOH HOH . G 6 HOH A 170 670 1077 HOH HOH . G 6 HOH A 171 671 179 HOH HOH . G 6 HOH A 172 672 821 HOH HOH . G 6 HOH A 173 673 1128 HOH HOH . G 6 HOH A 174 674 1038 HOH HOH . G 6 HOH A 175 675 1375 HOH HOH . G 6 HOH A 176 676 65 HOH HOH . G 6 HOH A 177 677 1187 HOH HOH . G 6 HOH A 178 678 175 HOH HOH . G 6 HOH A 179 679 495 HOH HOH . G 6 HOH A 180 680 1167 HOH HOH . G 6 HOH A 181 681 800 HOH HOH . G 6 HOH A 182 682 759 HOH HOH . G 6 HOH A 183 683 164 HOH HOH . G 6 HOH A 184 684 430 HOH HOH . G 6 HOH A 185 685 270 HOH HOH . G 6 HOH A 186 686 713 HOH HOH . G 6 HOH A 187 687 141 HOH HOH . G 6 HOH A 188 688 1127 HOH HOH . G 6 HOH A 189 689 1361 HOH HOH . G 6 HOH A 190 690 1283 HOH HOH . G 6 HOH A 191 691 1328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TSS . . . B 2 21.43 20.029 10.052 0.83 43.66 ? N1 TSS 401 A 1 HETATM 2 C CA TSS . . . B 2 21.204 21.339 9.427 0.83 42.56 ? CA TSS 401 A 1 HETATM 3 C CB TSS . . . B 2 21.056 22.415 10.493 0.83 45.63 ? CB TSS 401 A 1 HETATM 4 C CG TSS . . . B 2 22.322 23.124 10.875 0.83 45.7 ? CG TSS 401 A 1 HETATM 5 C CD1 TSS . . . B 2 22.733 24.357 10.456 0.83 42.4 ? CD1 TSS 401 A 1 HETATM 6 N NE1 TSS . . . B 2 23.933 24.678 11.034 0.83 44.73 ? NE1 TSS 401 A 1 HETATM 7 C CE2 TSS . . . B 2 24.334 23.65 11.848 0.83 32.72 ? CE2 TSS 401 A 1 HETATM 8 C CD2 TSS . . . B 2 23.346 22.644 11.773 0.83 44.44 ? CD2 TSS 401 A 1 HETATM 9 C CZ2 TSS . . . B 2 25.476 23.519 12.636 0.83 33.32 ? CZ2 TSS 401 A 1 HETATM 10 C CH2 TSS . . . B 2 25.627 22.349 13.347 0.83 36.38 ? CH2 TSS 401 A 1 HETATM 11 C CZ3 TSS . . . B 2 24.66 21.343 13.298 0.83 42.09 ? CZ3 TSS 401 A 1 HETATM 12 C CE3 TSS . . . B 2 23.525 21.474 12.523 0.83 44.65 ? CE3 TSS 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #