data_8ZII # _model_server_result.job_id 2_DijKY9m9z3-WEdMSYrVA _model_server_result.datetime_utc '2025-08-24 07:56:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8ZII # _exptl.entry_id 8ZII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.195 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Norbaeocystin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZII _cell.length_a 39.422 _cell.length_b 57.53 _cell.length_c 129.465 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZII _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N2 O4 P' _chem_comp.formula_weight 256.195 _chem_comp.id XP6 _chem_comp.mon_nstd_flag . _chem_comp.name Norbaeocystin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[3-(2-azanylethyl)-1~{H}-indol-4-yl] dihydrogen phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 P XP6 doub 424 n n O1 P XP6 sing 425 n n P O2 XP6 sing 426 n n P O4 XP6 sing 427 n n C6 C5 XP6 doub 428 n y C6 C7 XP6 sing 429 n y C5 C4 XP6 sing 430 n y C7 C8 XP6 doub 431 n y C4 O4 XP6 sing 432 n n C4 C9 XP6 doub 433 n y C8 C9 XP6 sing 434 n y C8 N1 XP6 sing 435 n y C9 C3 XP6 sing 436 n y N1 C2 XP6 sing 437 n y C3 C2 XP6 doub 438 n y C3 CB XP6 sing 439 n n CB CA XP6 sing 440 n n CA N XP6 sing 441 n n N H3 XP6 sing 442 n n N HN1 XP6 sing 443 n n CA HA1 XP6 sing 444 n n CA HA2 XP6 sing 445 n n CB HB2 XP6 sing 446 n n CB HB1 XP6 sing 447 n n C2 H2 XP6 sing 448 n n C5 H5 XP6 sing 449 n n C6 H6 XP6 sing 450 n n C7 H7 XP6 sing 451 n n N1 H1 XP6 sing 452 n n O1 H4 XP6 sing 453 n n O2 H8 XP6 sing 454 n n # _atom_sites.entry_id 8ZII _atom_sites.fract_transf_matrix[1][1] 0.025367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 401 401 SAH SAH . C 3 XP6 A 1 402 402 XP6 NOR . D 4 HOH A 1 501 79 HOH HOH . D 4 HOH A 2 502 113 HOH HOH . D 4 HOH A 3 503 76 HOH HOH . D 4 HOH A 4 504 102 HOH HOH . D 4 HOH A 5 505 108 HOH HOH . D 4 HOH A 6 506 58 HOH HOH . D 4 HOH A 7 507 32 HOH HOH . D 4 HOH A 8 508 57 HOH HOH . D 4 HOH A 9 509 18 HOH HOH . D 4 HOH A 10 510 94 HOH HOH . D 4 HOH A 11 511 17 HOH HOH . D 4 HOH A 12 512 8 HOH HOH . D 4 HOH A 13 513 75 HOH HOH . D 4 HOH A 14 514 100 HOH HOH . D 4 HOH A 15 515 54 HOH HOH . D 4 HOH A 16 516 22 HOH HOH . D 4 HOH A 17 517 111 HOH HOH . D 4 HOH A 18 518 90 HOH HOH . D 4 HOH A 19 519 3 HOH HOH . D 4 HOH A 20 520 9 HOH HOH . D 4 HOH A 21 521 12 HOH HOH . D 4 HOH A 22 522 15 HOH HOH . D 4 HOH A 23 523 11 HOH HOH . D 4 HOH A 24 524 44 HOH HOH . D 4 HOH A 25 525 10 HOH HOH . D 4 HOH A 26 526 30 HOH HOH . D 4 HOH A 27 527 34 HOH HOH . D 4 HOH A 28 528 27 HOH HOH . D 4 HOH A 29 529 72 HOH HOH . D 4 HOH A 30 530 101 HOH HOH . D 4 HOH A 31 531 5 HOH HOH . D 4 HOH A 32 532 6 HOH HOH . D 4 HOH A 33 533 45 HOH HOH . D 4 HOH A 34 534 105 HOH HOH . D 4 HOH A 35 535 52 HOH HOH . D 4 HOH A 36 536 4 HOH HOH . D 4 HOH A 37 537 29 HOH HOH . D 4 HOH A 38 538 2 HOH HOH . D 4 HOH A 39 539 59 HOH HOH . D 4 HOH A 40 540 65 HOH HOH . D 4 HOH A 41 541 23 HOH HOH . D 4 HOH A 42 542 56 HOH HOH . D 4 HOH A 43 543 61 HOH HOH . D 4 HOH A 44 544 38 HOH HOH . D 4 HOH A 45 545 49 HOH HOH . D 4 HOH A 46 546 47 HOH HOH . D 4 HOH A 47 547 51 HOH HOH . D 4 HOH A 48 548 37 HOH HOH . D 4 HOH A 49 549 36 HOH HOH . D 4 HOH A 50 550 33 HOH HOH . D 4 HOH A 51 551 31 HOH HOH . D 4 HOH A 52 552 46 HOH HOH . D 4 HOH A 53 553 96 HOH HOH . D 4 HOH A 54 554 69 HOH HOH . D 4 HOH A 55 555 13 HOH HOH . D 4 HOH A 56 556 74 HOH HOH . D 4 HOH A 57 557 1 HOH HOH . D 4 HOH A 58 558 14 HOH HOH . D 4 HOH A 59 559 73 HOH HOH . D 4 HOH A 60 560 78 HOH HOH . D 4 HOH A 61 561 28 HOH HOH . D 4 HOH A 62 562 89 HOH HOH . D 4 HOH A 63 563 103 HOH HOH . D 4 HOH A 64 564 42 HOH HOH . D 4 HOH A 65 565 67 HOH HOH . D 4 HOH A 66 566 70 HOH HOH . D 4 HOH A 67 567 62 HOH HOH . D 4 HOH A 68 568 7 HOH HOH . D 4 HOH A 69 569 19 HOH HOH . D 4 HOH A 70 570 39 HOH HOH . D 4 HOH A 71 571 55 HOH HOH . D 4 HOH A 72 572 86 HOH HOH . D 4 HOH A 73 573 26 HOH HOH . D 4 HOH A 74 574 24 HOH HOH . D 4 HOH A 75 575 60 HOH HOH . D 4 HOH A 76 576 92 HOH HOH . D 4 HOH A 77 577 107 HOH HOH . D 4 HOH A 78 578 80 HOH HOH . D 4 HOH A 79 579 20 HOH HOH . D 4 HOH A 80 580 25 HOH HOH . D 4 HOH A 81 581 104 HOH HOH . D 4 HOH A 82 582 81 HOH HOH . D 4 HOH A 83 583 77 HOH HOH . D 4 HOH A 84 584 41 HOH HOH . D 4 HOH A 85 585 16 HOH HOH . D 4 HOH A 86 586 21 HOH HOH . D 4 HOH A 87 587 50 HOH HOH . D 4 HOH A 88 588 87 HOH HOH . D 4 HOH A 89 589 71 HOH HOH . D 4 HOH A 90 590 48 HOH HOH . D 4 HOH A 91 591 112 HOH HOH . D 4 HOH A 92 592 35 HOH HOH . D 4 HOH A 93 593 97 HOH HOH . D 4 HOH A 94 594 82 HOH HOH . D 4 HOH A 95 595 110 HOH HOH . D 4 HOH A 96 596 84 HOH HOH . D 4 HOH A 97 597 91 HOH HOH . D 4 HOH A 98 598 64 HOH HOH . D 4 HOH A 99 599 43 HOH HOH . D 4 HOH A 100 600 85 HOH HOH . D 4 HOH A 101 601 98 HOH HOH . D 4 HOH A 102 602 63 HOH HOH . D 4 HOH A 103 603 95 HOH HOH . D 4 HOH A 104 604 83 HOH HOH . D 4 HOH A 105 605 40 HOH HOH . D 4 HOH A 106 606 109 HOH HOH . D 4 HOH A 107 607 93 HOH HOH . D 4 HOH A 108 608 53 HOH HOH . D 4 HOH A 109 609 88 HOH HOH . D 4 HOH A 110 610 66 HOH HOH . D 4 HOH A 111 611 99 HOH HOH . D 4 HOH A 112 612 68 HOH HOH . D 4 HOH A 113 613 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N XP6 . . . C 3 23.853 12.129 15.985 1 28.77 ? N XP6 402 A 1 HETATM 2 C CA XP6 . . . C 3 24.349 10.769 16.153 1 35.37 ? CA XP6 402 A 1 HETATM 3 C CB XP6 . . . C 3 24.107 10.244 17.573 1 31.15 ? CB XP6 402 A 1 HETATM 4 C C2 XP6 . . . C 3 26.012 8.61 18.272 1 43.08 ? C2 XP6 402 A 1 HETATM 5 C C3 XP6 . . . C 3 24.757 8.868 17.728 1 51.1 ? C3 XP6 402 A 1 HETATM 6 C C4 XP6 . . . C 3 23.028 7.173 16.745 1 52.64 ? C4 XP6 402 A 1 HETATM 7 C C5 XP6 . . . C 3 22.809 5.821 16.487 1 40.13 ? C5 XP6 402 A 1 HETATM 8 C C6 XP6 . . . C 3 23.774 4.886 16.827 1 40.9 ? C6 XP6 402 A 1 HETATM 9 C C7 XP6 . . . C 3 24.962 5.298 17.419 1 51.07 ? C7 XP6 402 A 1 HETATM 10 C C8 XP6 . . . C 3 25.194 6.664 17.681 1 54.84 ? C8 XP6 402 A 1 HETATM 11 C C9 XP6 . . . C 3 24.23 7.601 17.35 1 56.06 ? C9 XP6 402 A 1 HETATM 12 N N1 XP6 . . . C 3 26.24 7.31 18.228 1 41.34 ? N1 XP6 402 A 1 HETATM 13 O O1 XP6 . . . C 3 19.559 7.592 16.742 1 50.03 -1 O1 XP6 402 A 1 HETATM 14 O O2 XP6 . . . C 3 20.469 9.727 17.684 1 40.1 -1 O2 XP6 402 A 1 HETATM 15 O O3 XP6 . . . C 3 21.026 7.537 18.712 1 55.61 ? O3 XP6 402 A 1 HETATM 16 O O4 XP6 . . . C 3 22.038 8.111 16.4 1 54 ? O4 XP6 402 A 1 HETATM 17 P P XP6 . . . C 3 20.738 8.259 17.41 1 55.26 ? P XP6 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 17 #