data_8ZIN
#
_model_server_result.job_id            lcD7Hv6v41E4hNfGVKPPlw 
_model_server_result.datetime_utc      '2024-11-07 19:06:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zin 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":405}' 
#
_entry.id    8ZIN 
#
_exptl.entry_id    8ZIN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZIN 
_cell.length_a            86.295 
_cell.length_b            93.632 
_cell.length_c            165.595 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZIN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 179 A HIS 159 1_555 H ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc2 A NE2 HIS 223 A HIS 203 1_555 S ZN ZN . D ZN 404 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc3 A NE2 HIS 275 A HIS 255 1_555 H ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc4 G O1' DOB . A DOB 403 1_555 H ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc5 H ZN ZN . A ZN 404 4_554 D NE2 HIS 223 D HIS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc6 B NE2 HIS 179 B HIS 159 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc7 B NE2 HIS 223 B HIS 203 1_555 N ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc8 B NE2 HIS 275 B HIS 255 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc9 M ZN ZN . B ZN 401 1_555 V O HOH . B HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc10 M ZN ZN . B ZN 401 1_555 C NE2 HIS 223 C HIS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc11 C NE2 HIS 179 C HIS 159 1_555 N ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc12 C NE2 HIS 275 C HIS 255 1_555 N ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc13 N ZN ZN . C ZN 401 1_555 W O HOH . C HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc14 D NE2 HIS 179 D HIS 159 1_555 S ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc15 D NE2 HIS 275 D HIS 255 1_555 S ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc16 P O2' DOB . D DOB 401 1_555 S ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc17 P O2 DOB . D DOB 401 1_555 S ZN ZN . D ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 102 n n 
C1 C2 EDO sing 103 n n 
C1 H11 EDO sing 104 n n 
C1 H12 EDO sing 105 n n 
O1 HO1 EDO sing 106 n n 
C2 O2 EDO sing 107 n n 
C2 H21 EDO sing 108 n n 
C2 H22 EDO sing 109 n n 
O2 HO2 EDO sing 110 n n 
#
_atom_sites.entry_id                     8ZIN 
_atom_sites.fract_transf_matrix[1][1]    0.011588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 401 402 GOL GOL . 
F 3 EDO A 1 402 403 EDO EDO . 
G 4 DOB A 1 403 404 DOB LIG . 
H 5 ZN A 1 404 6 ZN ZN . 
I 3 EDO A 1 405 2 EDO EDO . 
J 3 EDO A 1 406 3 EDO EDO . 
K 3 EDO A 1 407 4 EDO EDO . 
L 3 EDO A 1 408 5 EDO EDO . 
M 5 ZN B 1 401 4 ZN ZN . 
N 5 ZN C 1 401 5 ZN ZN . 
O 6 CL C 1 402 1 CL CL . 
P 4 DOB D 1 401 403 DOB LIG . 
Q 7 CO2 D 1 402 404 CO2 CO2 . 
R 7 CO2 D 1 403 405 CO2 CO2 . 
S 5 ZN D 1 404 3 ZN ZN . 
T 3 EDO D 1 405 1 EDO EDO . 
U 8 HOH A 1 501 10 HOH HOH . 
U 8 HOH A 2 502 286 HOH HOH . 
U 8 HOH A 3 503 205 HOH HOH . 
U 8 HOH A 4 504 212 HOH HOH . 
U 8 HOH A 5 505 203 HOH HOH . 
U 8 HOH A 6 506 211 HOH HOH . 
U 8 HOH A 7 507 179 HOH HOH . 
U 8 HOH A 8 508 218 HOH HOH . 
U 8 HOH A 9 509 206 HOH HOH . 
U 8 HOH A 10 510 217 HOH HOH . 
U 8 HOH A 11 511 63 HOH HOH . 
U 8 HOH A 12 512 284 HOH HOH . 
U 8 HOH A 13 513 308 HOH HOH . 
U 8 HOH A 14 514 174 HOH HOH . 
U 8 HOH A 15 515 299 HOH HOH . 
U 8 HOH A 16 516 38 HOH HOH . 
U 8 HOH A 17 517 304 HOH HOH . 
U 8 HOH A 18 518 305 HOH HOH . 
U 8 HOH A 19 519 295 HOH HOH . 
U 8 HOH A 20 520 183 HOH HOH . 
U 8 HOH A 21 521 309 HOH HOH . 
U 8 HOH A 22 522 207 HOH HOH . 
U 8 HOH A 23 523 119 HOH HOH . 
U 8 HOH A 24 524 215 HOH HOH . 
U 8 HOH A 25 525 297 HOH HOH . 
U 8 HOH A 26 526 18 HOH HOH . 
U 8 HOH A 27 527 161 HOH HOH . 
U 8 HOH A 28 528 128 HOH HOH . 
U 8 HOH A 29 529 298 HOH HOH . 
V 8 HOH B 1 501 67 HOH HOH . 
V 8 HOH B 2 502 227 HOH HOH . 
V 8 HOH B 3 503 231 HOH HOH . 
V 8 HOH B 4 504 223 HOH HOH . 
V 8 HOH B 5 505 221 HOH HOH . 
V 8 HOH B 6 506 151 HOH HOH . 
V 8 HOH B 7 507 116 HOH HOH . 
V 8 HOH B 8 508 222 HOH HOH . 
V 8 HOH B 9 509 224 HOH HOH . 
V 8 HOH B 10 510 82 HOH HOH . 
V 8 HOH B 11 511 274 HOH HOH . 
V 8 HOH B 12 512 273 HOH HOH . 
V 8 HOH B 13 513 271 HOH HOH . 
V 8 HOH B 14 514 108 HOH HOH . 
V 8 HOH B 15 515 220 HOH HOH . 
V 8 HOH B 16 516 226 HOH HOH . 
V 8 HOH B 17 517 29 HOH HOH . 
V 8 HOH B 18 518 70 HOH HOH . 
V 8 HOH B 19 519 272 HOH HOH . 
V 8 HOH B 20 520 317 HOH HOH . 
V 8 HOH B 21 521 229 HOH HOH . 
V 8 HOH B 22 522 318 HOH HOH . 
V 8 HOH B 23 523 135 HOH HOH . 
V 8 HOH B 24 524 105 HOH HOH . 
V 8 HOH B 25 525 232 HOH HOH . 
W 8 HOH C 1 501 233 HOH HOH . 
W 8 HOH C 2 502 247 HOH HOH . 
W 8 HOH C 3 503 245 HOH HOH . 
W 8 HOH C 4 504 239 HOH HOH . 
W 8 HOH C 5 505 248 HOH HOH . 
W 8 HOH C 6 506 277 HOH HOH . 
W 8 HOH C 7 507 234 HOH HOH . 
W 8 HOH C 8 508 132 HOH HOH . 
W 8 HOH C 9 509 39 HOH HOH . 
W 8 HOH C 10 510 316 HOH HOH . 
W 8 HOH C 11 511 279 HOH HOH . 
W 8 HOH C 12 512 246 HOH HOH . 
W 8 HOH C 13 513 238 HOH HOH . 
W 8 HOH C 14 514 134 HOH HOH . 
W 8 HOH C 15 515 241 HOH HOH . 
W 8 HOH C 16 516 244 HOH HOH . 
W 8 HOH C 17 517 139 HOH HOH . 
W 8 HOH C 18 518 312 HOH HOH . 
W 8 HOH C 19 519 30 HOH HOH . 
W 8 HOH C 20 520 243 HOH HOH . 
W 8 HOH C 21 521 242 HOH HOH . 
W 8 HOH C 22 522 1 HOH HOH . 
X 8 HOH D 1 501 249 HOH HOH . 
X 8 HOH D 2 502 302 HOH HOH . 
X 8 HOH D 3 503 9 HOH HOH . 
X 8 HOH D 4 504 261 HOH HOH . 
X 8 HOH D 5 505 262 HOH HOH . 
X 8 HOH D 6 506 252 HOH HOH . 
X 8 HOH D 7 507 164 HOH HOH . 
X 8 HOH D 8 508 90 HOH HOH . 
X 8 HOH D 9 509 307 HOH HOH . 
X 8 HOH D 10 510 311 HOH HOH . 
X 8 HOH D 11 511 257 HOH HOH . 
X 8 HOH D 12 512 15 HOH HOH . 
X 8 HOH D 13 513 282 HOH HOH . 
X 8 HOH D 14 514 145 HOH HOH . 
X 8 HOH D 15 515 149 HOH HOH . 
X 8 HOH D 16 516 61 HOH HOH . 
X 8 HOH D 17 517 32 HOH HOH . 
X 8 HOH D 18 518 259 HOH HOH . 
X 8 HOH D 19 519 36 HOH HOH . 
X 8 HOH D 20 520 154 HOH HOH . 
X 8 HOH D 21 521 137 HOH HOH . 
X 8 HOH D 22 522 291 HOH HOH . 
X 8 HOH D 23 523 155 HOH HOH . 
X 8 HOH D 24 524 292 HOH HOH . 
X 8 HOH D 25 525 202 HOH HOH . 
X 8 HOH D 26 526 146 HOH HOH . 
X 8 HOH D 27 527 287 HOH HOH . 
X 8 HOH D 28 528 265 HOH HOH . 
X 8 HOH D 29 529 199 HOH HOH . 
X 8 HOH D 30 530 303 HOH HOH . 
X 8 HOH D 31 531 65 HOH HOH . 
X 8 HOH D 32 532 281 HOH HOH . 
X 8 HOH D 33 533 136 HOH HOH . 
X 8 HOH D 34 534 264 HOH HOH . 
X 8 HOH D 35 535 310 HOH HOH . 
X 8 HOH D 36 536 306 HOH HOH . 
X 8 HOH D 37 537 294 HOH HOH . 
X 8 HOH D 38 538 170 HOH HOH . 
X 8 HOH D 39 539 196 HOH HOH . 
X 8 HOH D 40 540 54 HOH HOH . 
X 8 HOH D 41 541 314 HOH HOH . 
X 8 HOH D 42 542 52 HOH HOH . 
X 8 HOH D 43 543 142 HOH HOH . 
X 8 HOH D 44 544 185 HOH HOH . 
X 8 HOH D 45 545 268 HOH HOH . 
X 8 HOH D 46 546 301 HOH HOH . 
X 8 HOH D 47 547 293 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . T 3 -4.476 -8.261 -36.883 1 42.94 0 C1 EDO 405 D 1 
HETATM 2 O O1 EDO . . . T 3 -5.447 -8.817 -36.014 1 43.39 0 O1 EDO 405 D 1 
HETATM 3 C C2 EDO . . . T 3 -3.061 -8.547 -36.509 1 43.53 0 C2 EDO 405 D 1 
HETATM 4 O O2 EDO . . . T 3 -2.802 -8.368 -35.125 1 46.36 0 O2 EDO 405 D 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#