data_8ZJ3 # _model_server_result.job_id X-Y_6cB8iJe0wP00-fvuHQ _model_server_result.datetime_utc '2024-12-21 13:20:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 8ZJ3 # _exptl.entry_id 8ZJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZJ3 _cell.length_a 86.831 _cell.length_b 94.332 _cell.length_c 168.433 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,O 1 1 D,L,M,N,R 1 2 B,C,I,J,K,P,Q 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_444 -x-1,-y-1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 -86.831 -47.166 -84.2165 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 J N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 160 A HIS 159 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc2 A NE2 HIS 204 A HIS 203 1_555 N ZN ZN . D ZN 403 4_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc3 A O GLY 212 A GLY 211 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc4 A OG SER 216 A SER 215 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc5 A NE2 HIS 256 A HIS 255 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc6 A OD1 ASP 257 A ASP 256 1_555 H MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc7 F ZN ZN . A ZN 402 4_445 D NE2 HIS 204 D HIS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc8 B NE2 HIS 204 B HIS 203 1_555 J ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc9 P O HOH . B HOH 516 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc10 C NE2 HIS 160 C HIS 159 1_555 J ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc11 C NE2 HIS 256 C HIS 255 1_555 J ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc12 C OD2 ASP 257 C ASP 256 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc13 D NE2 HIS 160 D HIS 159 1_555 N ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc14 D NE2 HIS 256 D HIS 255 1_555 N ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc15 L O1' PHB . D PHB 401 1_555 N ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ZJ3 _atom_sites.fract_transf_matrix[1][1] 0.011517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 401 401 EDO EDO . F 3 ZN A 1 402 2 ZN ZN . G 4 MG A 1 403 1 MG MG . H 4 MG A 1 404 2 MG MG . I 3 ZN B 1 401 3 ZN ZN . J 3 ZN C 1 401 4 ZN ZN . K 4 MG C 1 402 3 MG MG . L 5 PHB D 1 401 401 PHB PHB . M 6 GOL D 1 402 402 GOL GOL . N 3 ZN D 1 403 1 ZN ZN . O 7 HOH A 1 501 324 HOH HOH . O 7 HOH A 2 502 343 HOH HOH . O 7 HOH A 3 503 332 HOH HOH . O 7 HOH A 4 504 326 HOH HOH . O 7 HOH A 5 505 297 HOH HOH . O 7 HOH A 6 506 337 HOH HOH . O 7 HOH A 7 507 331 HOH HOH . O 7 HOH A 8 508 103 HOH HOH . O 7 HOH A 9 509 301 HOH HOH . O 7 HOH A 10 510 327 HOH HOH . O 7 HOH A 11 511 302 HOH HOH . O 7 HOH A 12 512 300 HOH HOH . O 7 HOH A 13 513 235 HOH HOH . O 7 HOH A 14 514 38 HOH HOH . O 7 HOH A 15 515 329 HOH HOH . O 7 HOH A 16 516 311 HOH HOH . O 7 HOH A 17 517 14 HOH HOH . O 7 HOH A 18 518 195 HOH HOH . O 7 HOH A 19 519 189 HOH HOH . O 7 HOH A 20 520 221 HOH HOH . O 7 HOH A 21 521 310 HOH HOH . O 7 HOH A 22 522 431 HOH HOH . O 7 HOH A 23 523 175 HOH HOH . O 7 HOH A 24 524 298 HOH HOH . O 7 HOH A 25 525 315 HOH HOH . O 7 HOH A 26 526 16 HOH HOH . O 7 HOH A 27 527 285 HOH HOH . O 7 HOH A 28 528 223 HOH HOH . O 7 HOH A 29 529 339 HOH HOH . O 7 HOH A 30 530 120 HOH HOH . O 7 HOH A 31 531 28 HOH HOH . O 7 HOH A 32 532 334 HOH HOH . O 7 HOH A 33 533 313 HOH HOH . O 7 HOH A 34 534 333 HOH HOH . O 7 HOH A 35 535 299 HOH HOH . O 7 HOH A 36 536 307 HOH HOH . O 7 HOH A 37 537 134 HOH HOH . O 7 HOH A 38 538 309 HOH HOH . O 7 HOH A 39 539 169 HOH HOH . O 7 HOH A 40 540 196 HOH HOH . O 7 HOH A 41 541 433 HOH HOH . O 7 HOH A 42 542 203 HOH HOH . O 7 HOH A 43 543 168 HOH HOH . O 7 HOH A 44 544 322 HOH HOH . O 7 HOH A 45 545 335 HOH HOH . O 7 HOH A 46 546 18 HOH HOH . O 7 HOH A 47 547 323 HOH HOH . O 7 HOH A 48 548 177 HOH HOH . O 7 HOH A 49 549 325 HOH HOH . O 7 HOH A 50 550 317 HOH HOH . O 7 HOH A 51 551 316 HOH HOH . O 7 HOH A 52 552 319 HOH HOH . O 7 HOH A 53 553 50 HOH HOH . O 7 HOH A 54 554 312 HOH HOH . O 7 HOH A 55 555 46 HOH HOH . O 7 HOH A 56 556 256 HOH HOH . O 7 HOH A 57 557 238 HOH HOH . O 7 HOH A 58 558 320 HOH HOH . O 7 HOH A 59 559 321 HOH HOH . O 7 HOH A 60 560 340 HOH HOH . O 7 HOH A 61 561 434 HOH HOH . O 7 HOH A 62 562 304 HOH HOH . O 7 HOH A 63 563 255 HOH HOH . O 7 HOH A 64 564 330 HOH HOH . O 7 HOH A 65 565 318 HOH HOH . O 7 HOH A 66 566 306 HOH HOH . P 7 HOH B 1 501 328 HOH HOH . P 7 HOH B 2 502 351 HOH HOH . P 7 HOH B 3 503 228 HOH HOH . P 7 HOH B 4 504 43 HOH HOH . P 7 HOH B 5 505 354 HOH HOH . P 7 HOH B 6 506 269 HOH HOH . P 7 HOH B 7 507 194 HOH HOH . P 7 HOH B 8 508 344 HOH HOH . P 7 HOH B 9 509 353 HOH HOH . P 7 HOH B 10 510 348 HOH HOH . P 7 HOH B 11 511 181 HOH HOH . P 7 HOH B 12 512 347 HOH HOH . P 7 HOH B 13 513 52 HOH HOH . P 7 HOH B 14 514 350 HOH HOH . P 7 HOH B 15 515 293 HOH HOH . P 7 HOH B 16 516 381 HOH HOH . P 7 HOH B 17 517 245 HOH HOH . P 7 HOH B 18 518 295 HOH HOH . P 7 HOH B 19 519 166 HOH HOH . P 7 HOH B 20 520 436 HOH HOH . P 7 HOH B 21 521 345 HOH HOH . P 7 HOH B 22 522 346 HOH HOH . P 7 HOH B 23 523 94 HOH HOH . P 7 HOH B 24 524 262 HOH HOH . P 7 HOH B 25 525 358 HOH HOH . P 7 HOH B 26 526 352 HOH HOH . P 7 HOH B 27 527 101 HOH HOH . P 7 HOH B 28 528 191 HOH HOH . P 7 HOH B 29 529 30 HOH HOH . P 7 HOH B 30 530 60 HOH HOH . P 7 HOH B 31 531 96 HOH HOH . P 7 HOH B 32 532 355 HOH HOH . P 7 HOH B 33 533 349 HOH HOH . P 7 HOH B 34 534 296 HOH HOH . P 7 HOH B 35 535 220 HOH HOH . Q 7 HOH C 1 501 383 HOH HOH . Q 7 HOH C 2 502 357 HOH HOH . Q 7 HOH C 3 503 372 HOH HOH . Q 7 HOH C 4 504 375 HOH HOH . Q 7 HOH C 5 505 369 HOH HOH . Q 7 HOH C 6 506 361 HOH HOH . Q 7 HOH C 7 507 360 HOH HOH . Q 7 HOH C 8 508 376 HOH HOH . Q 7 HOH C 9 509 243 HOH HOH . Q 7 HOH C 10 510 364 HOH HOH . Q 7 HOH C 11 511 201 HOH HOH . Q 7 HOH C 12 512 371 HOH HOH . Q 7 HOH C 13 513 368 HOH HOH . Q 7 HOH C 14 514 359 HOH HOH . Q 7 HOH C 15 515 190 HOH HOH . Q 7 HOH C 16 516 363 HOH HOH . Q 7 HOH C 17 517 200 HOH HOH . Q 7 HOH C 18 518 276 HOH HOH . Q 7 HOH C 19 519 143 HOH HOH . Q 7 HOH C 20 520 366 HOH HOH . Q 7 HOH C 21 521 367 HOH HOH . Q 7 HOH C 22 522 429 HOH HOH . Q 7 HOH C 23 523 362 HOH HOH . Q 7 HOH C 24 524 378 HOH HOH . Q 7 HOH C 25 525 379 HOH HOH . Q 7 HOH C 26 526 356 HOH HOH . Q 7 HOH C 27 527 236 HOH HOH . Q 7 HOH C 28 528 386 HOH HOH . Q 7 HOH C 29 529 380 HOH HOH . Q 7 HOH C 30 530 216 HOH HOH . Q 7 HOH C 31 531 265 HOH HOH . Q 7 HOH C 32 532 12 HOH HOH . Q 7 HOH C 33 533 370 HOH HOH . Q 7 HOH C 34 534 222 HOH HOH . Q 7 HOH C 35 535 336 HOH HOH . Q 7 HOH C 36 536 373 HOH HOH . Q 7 HOH C 37 537 374 HOH HOH . Q 7 HOH C 38 538 427 HOH HOH . Q 7 HOH C 39 539 231 HOH HOH . Q 7 HOH C 40 540 377 HOH HOH . R 7 HOH D 1 501 404 HOH HOH . R 7 HOH D 2 502 45 HOH HOH . R 7 HOH D 3 503 396 HOH HOH . R 7 HOH D 4 504 292 HOH HOH . R 7 HOH D 5 505 113 HOH HOH . R 7 HOH D 6 506 402 HOH HOH . R 7 HOH D 7 507 426 HOH HOH . R 7 HOH D 8 508 77 HOH HOH . R 7 HOH D 9 509 254 HOH HOH . R 7 HOH D 10 510 140 HOH HOH . R 7 HOH D 11 511 389 HOH HOH . R 7 HOH D 12 512 400 HOH HOH . R 7 HOH D 13 513 417 HOH HOH . R 7 HOH D 14 514 79 HOH HOH . R 7 HOH D 15 515 391 HOH HOH . R 7 HOH D 16 516 180 HOH HOH . R 7 HOH D 17 517 261 HOH HOH . R 7 HOH D 18 518 406 HOH HOH . R 7 HOH D 19 519 422 HOH HOH . R 7 HOH D 20 520 176 HOH HOH . R 7 HOH D 21 521 424 HOH HOH . R 7 HOH D 22 522 382 HOH HOH . R 7 HOH D 23 523 244 HOH HOH . R 7 HOH D 24 524 387 HOH HOH . R 7 HOH D 25 525 294 HOH HOH . R 7 HOH D 26 526 425 HOH HOH . R 7 HOH D 27 527 384 HOH HOH . R 7 HOH D 28 528 408 HOH HOH . R 7 HOH D 29 529 393 HOH HOH . R 7 HOH D 30 530 89 HOH HOH . R 7 HOH D 31 531 88 HOH HOH . R 7 HOH D 32 532 237 HOH HOH . R 7 HOH D 33 533 414 HOH HOH . R 7 HOH D 34 534 385 HOH HOH . R 7 HOH D 35 535 67 HOH HOH . R 7 HOH D 36 536 388 HOH HOH . R 7 HOH D 37 537 415 HOH HOH . R 7 HOH D 38 538 394 HOH HOH . R 7 HOH D 39 539 428 HOH HOH . R 7 HOH D 40 540 49 HOH HOH . R 7 HOH D 41 541 420 HOH HOH . R 7 HOH D 42 542 213 HOH HOH . R 7 HOH D 43 543 390 HOH HOH . R 7 HOH D 44 544 305 HOH HOH . R 7 HOH D 45 545 272 HOH HOH . R 7 HOH D 46 546 29 HOH HOH . R 7 HOH D 47 547 405 HOH HOH . R 7 HOH D 48 548 290 HOH HOH . R 7 HOH D 49 549 418 HOH HOH . R 7 HOH D 50 550 187 HOH HOH . R 7 HOH D 51 551 403 HOH HOH . R 7 HOH D 52 552 218 HOH HOH . R 7 HOH D 53 553 413 HOH HOH . R 7 HOH D 54 554 314 HOH HOH . R 7 HOH D 55 555 412 HOH HOH . R 7 HOH D 56 556 432 HOH HOH . R 7 HOH D 57 557 416 HOH HOH . R 7 HOH D 58 558 133 HOH HOH . R 7 HOH D 59 559 167 HOH HOH . R 7 HOH D 60 560 131 HOH HOH . R 7 HOH D 61 561 5 HOH HOH . R 7 HOH D 62 562 188 HOH HOH . R 7 HOH D 63 563 64 HOH HOH . R 7 HOH D 64 564 392 HOH HOH . R 7 HOH D 65 565 108 HOH HOH . R 7 HOH D 66 566 283 HOH HOH . R 7 HOH D 67 567 437 HOH HOH . R 7 HOH D 68 568 423 HOH HOH . R 7 HOH D 69 569 430 HOH HOH . R 7 HOH D 70 570 410 HOH HOH . R 7 HOH D 71 571 398 HOH HOH . R 7 HOH D 72 572 409 HOH HOH . R 7 HOH D 73 573 401 HOH HOH . R 7 HOH D 74 574 399 HOH HOH . R 7 HOH D 75 575 303 HOH HOH . R 7 HOH D 76 576 421 HOH HOH . R 7 HOH D 77 577 419 HOH HOH . R 7 HOH D 78 578 162 HOH HOH . R 7 HOH D 79 579 395 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.01 _atom_site.Cartn_y -22.74 _atom_site.Cartn_z 25.609 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #