data_8ZJ5
#
_model_server_result.job_id            4z7Gy-fX9toTqiofjncqIA 
_model_server_result.datetime_utc      '2024-11-17 18:30:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zj5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    8ZJ5 
#
_exptl.entry_id    8ZJ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.12 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '3,4-DIHYDROXYBENZOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZJ5 
_cell.length_a            87.041 
_cell.length_b            94.469 
_cell.length_c            167.425 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZJ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
D,H,I,J,N 1 1 
A,K 1 2 
B,C,E,F,G,L,M 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_445 -x-1,-y-1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 -87.041 -47.2345 83.7125 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 180 A HIS 159 1_555 J ZN ZN . D ZN 403 4_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc2 A NE2 HIS 224 A HIS 203 1_555 I ZN ZN . D ZN 402 4_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc3 B NE2 HIS 224 B HIS 203 1_555 G ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 E ZN ZN . B ZN 401 1_555 L O HOH . B HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc5 E ZN ZN . B ZN 401 1_555 L O HOH . B HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc6 C NE2 HIS 180 C HIS 159 1_555 G ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc7 C NE2 HIS 276 C HIS 255 1_555 G ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc8 F O1 DHB . C DHB 401 1_555 G ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc9 D NE2 HIS 180 D HIS 159 1_555 I ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc10 D NE2 HIS 276 D HIS 255 1_555 I ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc11 H O1 DHB . D DHB 401 1_555 I ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
#
_chem_comp.formula           'C7 H6 O4' 
_chem_comp.formula_weight    154.12 
_chem_comp.id                DHB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3,4-DIHYDROXYBENZOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DHB doub 83 n y 
C1 C6 DHB sing 84 n y 
C1 C DHB sing 85 n n 
C2 C3 DHB sing 86 n y 
C2 H2 DHB sing 87 n n 
C3 O3 DHB sing 88 n n 
C3 C4 DHB doub 89 n y 
O3 HO3 DHB sing 90 n n 
C4 O4 DHB sing 91 n n 
C4 C5 DHB sing 92 n y 
O4 HO4 DHB sing 93 n n 
C5 C6 DHB doub 94 n y 
C5 H5 DHB sing 95 n n 
C6 H6 DHB sing 96 n n 
C O1 DHB doub 97 n n 
C O2 DHB sing 98 n n 
O2 HO2 DHB sing 99 n n 
#
_atom_sites.entry_id                     8ZJ5 
_atom_sites.fract_transf_matrix[1][1]    0.011489 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005973 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN B 1 401 3 ZN ZN . 
F 3 DHB C 1 401 401 DHB DHB . 
G 2 ZN C 1 402 4 ZN ZN . 
H 3 DHB D 1 401 401 DHB DHB . 
I 2 ZN D 1 402 1 ZN ZN . 
J 2 ZN D 1 403 2 ZN ZN . 
K 4 HOH A 1 401 34 HOH HOH . 
K 4 HOH A 2 402 117 HOH HOH . 
K 4 HOH A 3 403 77 HOH HOH . 
K 4 HOH A 4 404 18 HOH HOH . 
K 4 HOH A 5 405 91 HOH HOH . 
K 4 HOH A 6 406 126 HOH HOH . 
K 4 HOH A 7 407 119 HOH HOH . 
K 4 HOH A 8 408 186 HOH HOH . 
K 4 HOH A 9 409 123 HOH HOH . 
K 4 HOH A 10 410 69 HOH HOH . 
K 4 HOH A 11 411 121 HOH HOH . 
K 4 HOH A 12 412 114 HOH HOH . 
K 4 HOH A 13 413 118 HOH HOH . 
K 4 HOH A 14 414 113 HOH HOH . 
K 4 HOH A 15 415 95 HOH HOH . 
K 4 HOH A 16 416 78 HOH HOH . 
K 4 HOH A 17 417 175 HOH HOH . 
K 4 HOH A 18 418 94 HOH HOH . 
K 4 HOH A 19 419 185 HOH HOH . 
K 4 HOH A 20 420 102 HOH HOH . 
K 4 HOH A 21 421 120 HOH HOH . 
K 4 HOH A 22 422 10 HOH HOH . 
K 4 HOH A 23 423 112 HOH HOH . 
K 4 HOH A 24 424 76 HOH HOH . 
K 4 HOH A 25 425 32 HOH HOH . 
K 4 HOH A 26 426 12 HOH HOH . 
K 4 HOH A 27 427 8 HOH HOH . 
K 4 HOH A 28 428 46 HOH HOH . 
K 4 HOH A 29 429 73 HOH HOH . 
K 4 HOH A 30 430 71 HOH HOH . 
K 4 HOH A 31 431 52 HOH HOH . 
K 4 HOH A 32 432 125 HOH HOH . 
K 4 HOH A 33 433 42 HOH HOH . 
K 4 HOH A 34 434 3 HOH HOH . 
K 4 HOH A 35 435 20 HOH HOH . 
K 4 HOH A 36 436 30 HOH HOH . 
K 4 HOH A 37 437 4 HOH HOH . 
K 4 HOH A 38 438 63 HOH HOH . 
K 4 HOH A 39 439 108 HOH HOH . 
K 4 HOH A 40 440 101 HOH HOH . 
K 4 HOH A 41 441 122 HOH HOH . 
K 4 HOH A 42 442 177 HOH HOH . 
K 4 HOH A 43 443 116 HOH HOH . 
L 4 HOH B 1 501 17 HOH HOH . 
L 4 HOH B 2 502 128 HOH HOH . 
L 4 HOH B 3 503 129 HOH HOH . 
L 4 HOH B 4 504 144 HOH HOH . 
L 4 HOH B 5 505 134 HOH HOH . 
L 4 HOH B 6 506 37 HOH HOH . 
L 4 HOH B 7 507 132 HOH HOH . 
L 4 HOH B 8 508 106 HOH HOH . 
L 4 HOH B 9 509 180 HOH HOH . 
L 4 HOH B 10 510 60 HOH HOH . 
L 4 HOH B 11 511 145 HOH HOH . 
L 4 HOH B 12 512 51 HOH HOH . 
L 4 HOH B 13 513 140 HOH HOH . 
L 4 HOH B 14 514 141 HOH HOH . 
L 4 HOH B 15 515 131 HOH HOH . 
L 4 HOH B 16 516 139 HOH HOH . 
L 4 HOH B 17 517 9 HOH HOH . 
L 4 HOH B 18 518 22 HOH HOH . 
L 4 HOH B 19 519 64 HOH HOH . 
L 4 HOH B 20 520 143 HOH HOH . 
L 4 HOH B 21 521 130 HOH HOH . 
L 4 HOH B 22 522 33 HOH HOH . 
L 4 HOH B 23 523 133 HOH HOH . 
L 4 HOH B 24 524 97 HOH HOH . 
L 4 HOH B 25 525 161 HOH HOH . 
L 4 HOH B 26 526 11 HOH HOH . 
L 4 HOH B 27 527 179 HOH HOH . 
L 4 HOH B 28 528 135 HOH HOH . 
L 4 HOH B 29 529 65 HOH HOH . 
L 4 HOH B 30 530 27 HOH HOH . 
L 4 HOH B 31 531 127 HOH HOH . 
L 4 HOH B 32 532 93 HOH HOH . 
L 4 HOH B 33 533 178 HOH HOH . 
M 4 HOH C 1 501 160 HOH HOH . 
M 4 HOH C 2 502 88 HOH HOH . 
M 4 HOH C 3 503 157 HOH HOH . 
M 4 HOH C 4 504 146 HOH HOH . 
M 4 HOH C 5 505 149 HOH HOH . 
M 4 HOH C 6 506 43 HOH HOH . 
M 4 HOH C 7 507 29 HOH HOH . 
M 4 HOH C 8 508 74 HOH HOH . 
M 4 HOH C 9 509 148 HOH HOH . 
M 4 HOH C 10 510 138 HOH HOH . 
M 4 HOH C 11 511 159 HOH HOH . 
M 4 HOH C 12 512 23 HOH HOH . 
M 4 HOH C 13 513 147 HOH HOH . 
M 4 HOH C 14 514 45 HOH HOH . 
M 4 HOH C 15 515 151 HOH HOH . 
M 4 HOH C 16 516 82 HOH HOH . 
M 4 HOH C 17 517 90 HOH HOH . 
M 4 HOH C 18 518 181 HOH HOH . 
M 4 HOH C 19 519 36 HOH HOH . 
M 4 HOH C 20 520 68 HOH HOH . 
M 4 HOH C 21 521 153 HOH HOH . 
M 4 HOH C 22 522 25 HOH HOH . 
M 4 HOH C 23 523 72 HOH HOH . 
M 4 HOH C 24 524 152 HOH HOH . 
M 4 HOH C 25 525 53 HOH HOH . 
M 4 HOH C 26 526 104 HOH HOH . 
M 4 HOH C 27 527 5 HOH HOH . 
M 4 HOH C 28 528 21 HOH HOH . 
M 4 HOH C 29 529 41 HOH HOH . 
M 4 HOH C 30 530 162 HOH HOH . 
M 4 HOH C 31 531 115 HOH HOH . 
M 4 HOH C 32 532 156 HOH HOH . 
M 4 HOH C 33 533 163 HOH HOH . 
M 4 HOH C 34 534 155 HOH HOH . 
M 4 HOH C 35 535 158 HOH HOH . 
N 4 HOH D 1 501 170 HOH HOH . 
N 4 HOH D 2 502 56 HOH HOH . 
N 4 HOH D 3 503 167 HOH HOH . 
N 4 HOH D 4 504 75 HOH HOH . 
N 4 HOH D 5 505 84 HOH HOH . 
N 4 HOH D 6 506 13 HOH HOH . 
N 4 HOH D 7 507 98 HOH HOH . 
N 4 HOH D 8 508 182 HOH HOH . 
N 4 HOH D 9 509 92 HOH HOH . 
N 4 HOH D 10 510 168 HOH HOH . 
N 4 HOH D 11 511 171 HOH HOH . 
N 4 HOH D 12 512 40 HOH HOH . 
N 4 HOH D 13 513 58 HOH HOH . 
N 4 HOH D 14 514 174 HOH HOH . 
N 4 HOH D 15 515 173 HOH HOH . 
N 4 HOH D 16 516 24 HOH HOH . 
N 4 HOH D 17 517 39 HOH HOH . 
N 4 HOH D 18 518 6 HOH HOH . 
N 4 HOH D 19 519 59 HOH HOH . 
N 4 HOH D 20 520 165 HOH HOH . 
N 4 HOH D 21 521 26 HOH HOH . 
N 4 HOH D 22 522 166 HOH HOH . 
N 4 HOH D 23 523 35 HOH HOH . 
N 4 HOH D 24 524 89 HOH HOH . 
N 4 HOH D 25 525 103 HOH HOH . 
N 4 HOH D 26 526 105 HOH HOH . 
N 4 HOH D 27 527 96 HOH HOH . 
N 4 HOH D 28 528 49 HOH HOH . 
N 4 HOH D 29 529 183 HOH HOH . 
N 4 HOH D 30 530 28 HOH HOH . 
N 4 HOH D 31 531 85 HOH HOH . 
N 4 HOH D 32 532 164 HOH HOH . 
N 4 HOH D 33 533 176 HOH HOH . 
N 4 HOH D 34 534 1 HOH HOH . 
N 4 HOH D 35 535 83 HOH HOH . 
N 4 HOH D 36 536 31 HOH HOH . 
N 4 HOH D 37 537 57 HOH HOH . 
N 4 HOH D 38 538 38 HOH HOH . 
N 4 HOH D 39 539 2 HOH HOH . 
N 4 HOH D 40 540 61 HOH HOH . 
N 4 HOH D 41 541 44 HOH HOH . 
N 4 HOH D 42 542 169 HOH HOH . 
N 4 HOH D 43 543 14 HOH HOH . 
N 4 HOH D 44 544 48 HOH HOH . 
N 4 HOH D 45 545 150 HOH HOH . 
N 4 HOH D 46 546 80 HOH HOH . 
N 4 HOH D 47 547 110 HOH HOH . 
N 4 HOH D 48 548 86 HOH HOH . 
N 4 HOH D 49 549 109 HOH HOH . 
N 4 HOH D 50 550 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DHB . . . H 3 -37.661 -25.268 46.179 0.5 10.89 ? C1 DHB 401 D 1 
HETATM 2 C C2 DHB . . . H 3 -39.033 -25.069 46.019 0.5 10.65 ? C2 DHB 401 D 1 
HETATM 3 C C3 DHB . . . H 3 -39.595 -25.221 44.765 0.5 10.37 ? C3 DHB 401 D 1 
HETATM 4 O O3 DHB . . . H 3 -40.922 -25.048 44.499 0.5 10.29 ? O3 DHB 401 D 1 
HETATM 5 C C4 DHB . . . H 3 -38.8 -25.549 43.667 0.5 10.28 ? C4 DHB 401 D 1 
HETATM 6 O O4 DHB . . . H 3 -39.421 -25.689 42.449 0.5 10.09 ? O4 DHB 401 D 1 
HETATM 7 C C5 DHB . . . H 3 -37.442 -25.731 43.824 0.5 10.5 ? C5 DHB 401 D 1 
HETATM 8 C C6 DHB . . . H 3 -36.879 -25.597 45.083 0.5 10.84 ? C6 DHB 401 D 1 
HETATM 9 C C DHB . . . H 3 -37.027 -25.109 47.515 0.5 11.34 ? C DHB 401 D 1 
HETATM 10 O O1 DHB . . . H 3 -37.72 -24.714 48.447 0.5 11.42 ? O1 DHB 401 D 1 
HETATM 11 O O2 DHB . . . H 3 -35.833 -25.402 47.616 0.5 11.69 ? O2 DHB 401 D 1 
HETATM 12 H H2 DHB . . . H 3 -39.574 -24.844 46.755 0.5 10.79 ? H2 DHB 401 D 1 
HETATM 13 H HO3 DHB . . . H 3 -41.193 -25.136 43.663 0 30 ? HO3 DHB 401 D 1 
HETATM 14 H HO4 DHB . . . H 3 -38.963 -25.88 41.75 0 30 ? HO4 DHB 401 D 1 
HETATM 15 H H5 DHB . . . H 3 -36.909 -25.965 43.086 0.5 10.47 ? H5 DHB 401 D 1 
HETATM 16 H H6 DHB . . . H 3 -35.953 -25.724 45.191 0.5 11.09 ? H6 DHB 401 D 1 
#
_model_server_stats.io_time_ms              89 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           434 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           16 
#