data_8ZJV # _model_server_result.job_id a8eorTmyUm1b_IFKyeHLMA _model_server_result.datetime_utc '2024-11-15 08:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8ZJV # _exptl.entry_id 8ZJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8ZJV _cell.length_a 96.979 _cell.length_b 96.979 _cell.length_c 95.53 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 31.843333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 118 n n C1 C2 EDO sing 119 n n C1 H11 EDO sing 120 n n C1 H12 EDO sing 121 n n O1 HO1 EDO sing 122 n n C2 O2 EDO sing 123 n n C2 H21 EDO sing 124 n n C2 H22 EDO sing 125 n n O2 HO2 EDO sing 126 n n # _atom_sites.entry_id 8ZJV _atom_sites.fract_transf_matrix[1][1] 0.010312 _atom_sites.fract_transf_matrix[1][2] 0.005953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5ID A 1 401 401 5ID 5ID . C 3 EDO A 1 402 402 EDO EDO . D 3 EDO A 1 403 403 EDO EDO . E 3 EDO A 1 404 404 EDO EDO . F 4 SO4 A 1 405 1 SO4 SO4 . G 4 SO4 A 1 406 2 SO4 SO4 . H 4 SO4 A 1 407 3 SO4 SO4 . I 4 SO4 A 1 408 4 SO4 SO4 . J 5 CL A 1 409 1 CL CL . K 6 HOH A 1 501 163 HOH HOH . K 6 HOH A 2 502 228 HOH HOH . K 6 HOH A 3 503 150 HOH HOH . K 6 HOH A 4 504 252 HOH HOH . K 6 HOH A 5 505 206 HOH HOH . K 6 HOH A 6 506 98 HOH HOH . K 6 HOH A 7 507 172 HOH HOH . K 6 HOH A 8 508 270 HOH HOH . K 6 HOH A 9 509 221 HOH HOH . K 6 HOH A 10 510 299 HOH HOH . K 6 HOH A 11 511 269 HOH HOH . K 6 HOH A 12 512 256 HOH HOH . K 6 HOH A 13 513 152 HOH HOH . K 6 HOH A 14 514 140 HOH HOH . K 6 HOH A 15 515 131 HOH HOH . K 6 HOH A 16 516 232 HOH HOH . K 6 HOH A 17 517 94 HOH HOH . K 6 HOH A 18 518 165 HOH HOH . K 6 HOH A 19 519 224 HOH HOH . K 6 HOH A 20 520 120 HOH HOH . K 6 HOH A 21 521 15 HOH HOH . K 6 HOH A 22 522 210 HOH HOH . K 6 HOH A 23 523 282 HOH HOH . K 6 HOH A 24 524 115 HOH HOH . K 6 HOH A 25 525 121 HOH HOH . K 6 HOH A 26 526 79 HOH HOH . K 6 HOH A 27 527 89 HOH HOH . K 6 HOH A 28 528 69 HOH HOH . K 6 HOH A 29 529 40 HOH HOH . K 6 HOH A 30 530 160 HOH HOH . K 6 HOH A 31 531 215 HOH HOH . K 6 HOH A 32 532 170 HOH HOH . K 6 HOH A 33 533 143 HOH HOH . K 6 HOH A 34 534 60 HOH HOH . K 6 HOH A 35 535 105 HOH HOH . K 6 HOH A 36 536 250 HOH HOH . K 6 HOH A 37 537 63 HOH HOH . K 6 HOH A 38 538 93 HOH HOH . K 6 HOH A 39 539 124 HOH HOH . K 6 HOH A 40 540 106 HOH HOH . K 6 HOH A 41 541 36 HOH HOH . K 6 HOH A 42 542 99 HOH HOH . K 6 HOH A 43 543 52 HOH HOH . K 6 HOH A 44 544 295 HOH HOH . K 6 HOH A 45 545 242 HOH HOH . K 6 HOH A 46 546 263 HOH HOH . K 6 HOH A 47 547 246 HOH HOH . K 6 HOH A 48 548 25 HOH HOH . K 6 HOH A 49 549 191 HOH HOH . K 6 HOH A 50 550 195 HOH HOH . K 6 HOH A 51 551 66 HOH HOH . K 6 HOH A 52 552 70 HOH HOH . K 6 HOH A 53 553 48 HOH HOH . K 6 HOH A 54 554 82 HOH HOH . K 6 HOH A 55 555 181 HOH HOH . K 6 HOH A 56 556 46 HOH HOH . K 6 HOH A 57 557 298 HOH HOH . K 6 HOH A 58 558 254 HOH HOH . K 6 HOH A 59 559 137 HOH HOH . K 6 HOH A 60 560 75 HOH HOH . K 6 HOH A 61 561 78 HOH HOH . K 6 HOH A 62 562 139 HOH HOH . K 6 HOH A 63 563 111 HOH HOH . K 6 HOH A 64 564 39 HOH HOH . K 6 HOH A 65 565 43 HOH HOH . K 6 HOH A 66 566 138 HOH HOH . K 6 HOH A 67 567 58 HOH HOH . K 6 HOH A 68 568 190 HOH HOH . K 6 HOH A 69 569 159 HOH HOH . K 6 HOH A 70 570 2 HOH HOH . K 6 HOH A 71 571 44 HOH HOH . K 6 HOH A 72 572 266 HOH HOH . K 6 HOH A 73 573 204 HOH HOH . K 6 HOH A 74 574 103 HOH HOH . K 6 HOH A 75 575 118 HOH HOH . K 6 HOH A 76 576 1 HOH HOH . K 6 HOH A 77 577 32 HOH HOH . K 6 HOH A 78 578 184 HOH HOH . K 6 HOH A 79 579 35 HOH HOH . K 6 HOH A 80 580 117 HOH HOH . K 6 HOH A 81 581 71 HOH HOH . K 6 HOH A 82 582 27 HOH HOH . K 6 HOH A 83 583 76 HOH HOH . K 6 HOH A 84 584 67 HOH HOH . K 6 HOH A 85 585 42 HOH HOH . K 6 HOH A 86 586 141 HOH HOH . K 6 HOH A 87 587 38 HOH HOH . K 6 HOH A 88 588 34 HOH HOH . K 6 HOH A 89 589 104 HOH HOH . K 6 HOH A 90 590 134 HOH HOH . K 6 HOH A 91 591 4 HOH HOH . K 6 HOH A 92 592 85 HOH HOH . K 6 HOH A 93 593 169 HOH HOH . K 6 HOH A 94 594 135 HOH HOH . K 6 HOH A 95 595 96 HOH HOH . K 6 HOH A 96 596 157 HOH HOH . K 6 HOH A 97 597 108 HOH HOH . K 6 HOH A 98 598 9 HOH HOH . K 6 HOH A 99 599 291 HOH HOH . K 6 HOH A 100 600 144 HOH HOH . K 6 HOH A 101 601 20 HOH HOH . K 6 HOH A 102 602 29 HOH HOH . K 6 HOH A 103 603 201 HOH HOH . K 6 HOH A 104 604 155 HOH HOH . K 6 HOH A 105 605 223 HOH HOH . K 6 HOH A 106 606 87 HOH HOH . K 6 HOH A 107 607 177 HOH HOH . K 6 HOH A 108 608 119 HOH HOH . K 6 HOH A 109 609 113 HOH HOH . K 6 HOH A 110 610 10 HOH HOH . K 6 HOH A 111 611 6 HOH HOH . K 6 HOH A 112 612 268 HOH HOH . K 6 HOH A 113 613 31 HOH HOH . K 6 HOH A 114 614 12 HOH HOH . K 6 HOH A 115 615 133 HOH HOH . K 6 HOH A 116 616 231 HOH HOH . K 6 HOH A 117 617 261 HOH HOH . K 6 HOH A 118 618 53 HOH HOH . K 6 HOH A 119 619 114 HOH HOH . K 6 HOH A 120 620 62 HOH HOH . K 6 HOH A 121 621 17 HOH HOH . K 6 HOH A 122 622 192 HOH HOH . K 6 HOH A 123 623 107 HOH HOH . K 6 HOH A 124 624 292 HOH HOH . K 6 HOH A 125 625 74 HOH HOH . K 6 HOH A 126 626 72 HOH HOH . K 6 HOH A 127 627 37 HOH HOH . K 6 HOH A 128 628 257 HOH HOH . K 6 HOH A 129 629 130 HOH HOH . K 6 HOH A 130 630 33 HOH HOH . K 6 HOH A 131 631 273 HOH HOH . K 6 HOH A 132 632 110 HOH HOH . K 6 HOH A 133 633 304 HOH HOH . K 6 HOH A 134 634 80 HOH HOH . K 6 HOH A 135 635 26 HOH HOH . K 6 HOH A 136 636 149 HOH HOH . K 6 HOH A 137 637 209 HOH HOH . K 6 HOH A 138 638 21 HOH HOH . K 6 HOH A 139 639 158 HOH HOH . K 6 HOH A 140 640 217 HOH HOH . K 6 HOH A 141 641 88 HOH HOH . K 6 HOH A 142 642 129 HOH HOH . K 6 HOH A 143 643 197 HOH HOH . K 6 HOH A 144 644 147 HOH HOH . K 6 HOH A 145 645 293 HOH HOH . K 6 HOH A 146 646 189 HOH HOH . K 6 HOH A 147 647 30 HOH HOH . K 6 HOH A 148 648 92 HOH HOH . K 6 HOH A 149 649 59 HOH HOH . K 6 HOH A 150 650 16 HOH HOH . K 6 HOH A 151 651 258 HOH HOH . K 6 HOH A 152 652 101 HOH HOH . K 6 HOH A 153 653 57 HOH HOH . K 6 HOH A 154 654 151 HOH HOH . K 6 HOH A 155 655 112 HOH HOH . K 6 HOH A 156 656 301 HOH HOH . K 6 HOH A 157 657 216 HOH HOH . K 6 HOH A 158 658 302 HOH HOH . K 6 HOH A 159 659 153 HOH HOH . K 6 HOH A 160 660 3 HOH HOH . K 6 HOH A 161 661 84 HOH HOH . K 6 HOH A 162 662 22 HOH HOH . K 6 HOH A 163 663 255 HOH HOH . K 6 HOH A 164 664 289 HOH HOH . K 6 HOH A 165 665 178 HOH HOH . K 6 HOH A 166 666 136 HOH HOH . K 6 HOH A 167 667 5 HOH HOH . K 6 HOH A 168 668 81 HOH HOH . K 6 HOH A 169 669 77 HOH HOH . K 6 HOH A 170 670 230 HOH HOH . K 6 HOH A 171 671 126 HOH HOH . K 6 HOH A 172 672 294 HOH HOH . K 6 HOH A 173 673 73 HOH HOH . K 6 HOH A 174 674 234 HOH HOH . K 6 HOH A 175 675 283 HOH HOH . K 6 HOH A 176 676 47 HOH HOH . K 6 HOH A 177 677 303 HOH HOH . K 6 HOH A 178 678 8 HOH HOH . K 6 HOH A 179 679 162 HOH HOH . K 6 HOH A 180 680 23 HOH HOH . K 6 HOH A 181 681 19 HOH HOH . K 6 HOH A 182 682 288 HOH HOH . K 6 HOH A 183 683 64 HOH HOH . K 6 HOH A 184 684 50 HOH HOH . K 6 HOH A 185 685 175 HOH HOH . K 6 HOH A 186 686 180 HOH HOH . K 6 HOH A 187 687 167 HOH HOH . K 6 HOH A 188 688 200 HOH HOH . K 6 HOH A 189 689 51 HOH HOH . K 6 HOH A 190 690 45 HOH HOH . K 6 HOH A 191 691 235 HOH HOH . K 6 HOH A 192 692 83 HOH HOH . K 6 HOH A 193 693 251 HOH HOH . K 6 HOH A 194 694 7 HOH HOH . K 6 HOH A 195 695 102 HOH HOH . K 6 HOH A 196 696 287 HOH HOH . K 6 HOH A 197 697 164 HOH HOH . K 6 HOH A 198 698 208 HOH HOH . K 6 HOH A 199 699 116 HOH HOH . K 6 HOH A 200 700 276 HOH HOH . K 6 HOH A 201 701 142 HOH HOH . K 6 HOH A 202 702 11 HOH HOH . K 6 HOH A 203 703 279 HOH HOH . K 6 HOH A 204 704 227 HOH HOH . K 6 HOH A 205 705 249 HOH HOH . K 6 HOH A 206 706 243 HOH HOH . K 6 HOH A 207 707 290 HOH HOH . K 6 HOH A 208 708 218 HOH HOH . K 6 HOH A 209 709 100 HOH HOH . K 6 HOH A 210 710 220 HOH HOH . K 6 HOH A 211 711 97 HOH HOH . K 6 HOH A 212 712 225 HOH HOH . K 6 HOH A 213 713 95 HOH HOH . K 6 HOH A 214 714 127 HOH HOH . K 6 HOH A 215 715 212 HOH HOH . K 6 HOH A 216 716 213 HOH HOH . K 6 HOH A 217 717 277 HOH HOH . K 6 HOH A 218 718 24 HOH HOH . K 6 HOH A 219 719 90 HOH HOH . K 6 HOH A 220 720 128 HOH HOH . K 6 HOH A 221 721 260 HOH HOH . K 6 HOH A 222 722 229 HOH HOH . K 6 HOH A 223 723 196 HOH HOH . K 6 HOH A 224 724 245 HOH HOH . K 6 HOH A 225 725 238 HOH HOH . K 6 HOH A 226 726 91 HOH HOH . K 6 HOH A 227 727 156 HOH HOH . K 6 HOH A 228 728 194 HOH HOH . K 6 HOH A 229 729 161 HOH HOH . K 6 HOH A 230 730 272 HOH HOH . K 6 HOH A 231 731 264 HOH HOH . K 6 HOH A 232 732 226 HOH HOH . K 6 HOH A 233 733 145 HOH HOH . K 6 HOH A 234 734 154 HOH HOH . K 6 HOH A 235 735 253 HOH HOH . K 6 HOH A 236 736 248 HOH HOH . K 6 HOH A 237 737 211 HOH HOH . K 6 HOH A 238 738 148 HOH HOH . K 6 HOH A 239 739 166 HOH HOH . K 6 HOH A 240 740 55 HOH HOH . K 6 HOH A 241 741 205 HOH HOH . K 6 HOH A 242 742 193 HOH HOH . K 6 HOH A 243 743 236 HOH HOH . K 6 HOH A 244 744 123 HOH HOH . K 6 HOH A 245 745 13 HOH HOH . K 6 HOH A 246 746 274 HOH HOH . K 6 HOH A 247 747 259 HOH HOH . K 6 HOH A 248 748 198 HOH HOH . K 6 HOH A 249 749 247 HOH HOH . K 6 HOH A 250 750 280 HOH HOH . K 6 HOH A 251 751 207 HOH HOH . K 6 HOH A 252 752 182 HOH HOH . K 6 HOH A 253 753 286 HOH HOH . K 6 HOH A 254 754 28 HOH HOH . K 6 HOH A 255 755 244 HOH HOH . K 6 HOH A 256 756 171 HOH HOH . K 6 HOH A 257 757 109 HOH HOH . K 6 HOH A 258 758 219 HOH HOH . K 6 HOH A 259 759 239 HOH HOH . K 6 HOH A 260 760 297 HOH HOH . K 6 HOH A 261 761 14 HOH HOH . K 6 HOH A 262 762 203 HOH HOH . K 6 HOH A 263 763 300 HOH HOH . K 6 HOH A 264 764 176 HOH HOH . K 6 HOH A 265 765 296 HOH HOH . K 6 HOH A 266 766 262 HOH HOH . K 6 HOH A 267 767 233 HOH HOH . K 6 HOH A 268 768 185 HOH HOH . K 6 HOH A 269 769 132 HOH HOH . K 6 HOH A 270 770 271 HOH HOH . K 6 HOH A 271 771 267 HOH HOH . K 6 HOH A 272 772 65 HOH HOH . K 6 HOH A 273 773 275 HOH HOH . K 6 HOH A 274 774 202 HOH HOH . K 6 HOH A 275 775 86 HOH HOH . K 6 HOH A 276 776 214 HOH HOH . K 6 HOH A 277 777 56 HOH HOH . K 6 HOH A 278 778 284 HOH HOH . K 6 HOH A 279 779 188 HOH HOH . K 6 HOH A 280 780 240 HOH HOH . K 6 HOH A 281 781 68 HOH HOH . K 6 HOH A 282 782 183 HOH HOH . K 6 HOH A 283 783 122 HOH HOH . K 6 HOH A 284 784 237 HOH HOH . K 6 HOH A 285 785 49 HOH HOH . K 6 HOH A 286 786 18 HOH HOH . K 6 HOH A 287 787 54 HOH HOH . K 6 HOH A 288 788 278 HOH HOH . K 6 HOH A 289 789 199 HOH HOH . K 6 HOH A 290 790 285 HOH HOH . K 6 HOH A 291 791 281 HOH HOH . K 6 HOH A 292 792 173 HOH HOH . K 6 HOH A 293 793 265 HOH HOH . K 6 HOH A 294 794 186 HOH HOH . K 6 HOH A 295 795 168 HOH HOH . K 6 HOH A 296 796 146 HOH HOH . K 6 HOH A 297 797 179 HOH HOH . K 6 HOH A 298 798 222 HOH HOH . K 6 HOH A 299 799 41 HOH HOH . K 6 HOH A 300 800 125 HOH HOH . K 6 HOH A 301 801 61 HOH HOH . K 6 HOH A 302 802 174 HOH HOH . K 6 HOH A 303 803 241 HOH HOH . K 6 HOH A 304 804 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -30.77 15.923 13.454 1 36.44 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 3 -30.464 17.288 13.73 1 38.37 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 3 -29.472 15.173 13.225 1 41.21 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 3 -29.791 13.826 12.862 1 45.94 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 644 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #