data_8ZMC # _model_server_result.job_id r3YYsSM8OLzXzQBSgPFghw _model_server_result.datetime_utc '2025-07-25 11:10:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8ZMC # _exptl.entry_id 8ZMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZMC _cell.length_a 50.877 _cell.length_b 59.966 _cell.length_c 185.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 322 n n N HN1 SAH sing 323 n n N HN2 SAH sing 324 n n CA CB SAH sing 325 n n CA C SAH sing 326 n n CA HA SAH sing 327 n n CB CG SAH sing 328 n n CB HB1 SAH sing 329 n n CB HB2 SAH sing 330 n n CG SD SAH sing 331 n n CG HG1 SAH sing 332 n n CG HG2 SAH sing 333 n n SD C5' SAH sing 334 n n C O SAH doub 335 n n C OXT SAH sing 336 n n OXT HXT SAH sing 337 n n C5' C4' SAH sing 338 n n C5' "H5'1" SAH sing 339 n n C5' "H5'2" SAH sing 340 n n C4' O4' SAH sing 341 n n C4' C3' SAH sing 342 n n C4' H4' SAH sing 343 n n O4' C1' SAH sing 344 n n C3' O3' SAH sing 345 n n C3' C2' SAH sing 346 n n C3' H3' SAH sing 347 n n O3' HO3' SAH sing 348 n n C2' O2' SAH sing 349 n n C2' C1' SAH sing 350 n n C2' H2' SAH sing 351 n n O2' HO2' SAH sing 352 n n C1' N9 SAH sing 353 n n C1' H1' SAH sing 354 n n N9 C8 SAH sing 355 n y N9 C4 SAH sing 356 n y C8 N7 SAH doub 357 n y C8 H8 SAH sing 358 n n N7 C5 SAH sing 359 n y C5 C6 SAH sing 360 n y C5 C4 SAH doub 361 n y C6 N6 SAH sing 362 n n C6 N1 SAH doub 363 n y N6 HN61 SAH sing 364 n n N6 HN62 SAH sing 365 n n N1 C2 SAH sing 366 n y C2 N3 SAH doub 367 n y C2 H2 SAH sing 368 n n N3 C4 SAH sing 369 n y # _atom_sites.entry_id 8ZMC _atom_sites.fract_transf_matrix[1][1] 0.019655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 A1L1Z A 1 302 302 A1L1Z LIG . E 4 GOL A 1 303 2 GOL GOL . F 4 GOL A 1 304 3 GOL GOL . G 4 GOL A 1 305 4 GOL GOL . H 4 GOL A 1 306 5 GOL GOL . I 2 SAH B 1 301 301 SAH SAH . J 4 GOL B 1 302 6 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 7.086 -8.038 42.969 1 21.87 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . C 2 7.393 -7.235 44.19 1 20.96 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . C 2 6.149 -6.503 44.709 1 21.31 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . C 2 6.23 -4.993 44.512 1 22.62 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . C 2 4.608 -4.26 44.221 1 24.96 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . C 2 8.028 -8.113 45.277 1 20.05 ? C SAH 301 A 1 HETATM 7 O O SAH . . . C 2 8.028 -9.341 45.086 1 19.84 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . C 2 8.548 -7.535 46.246 1 19.79 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . C 2 4.799 -3.198 42.756 1 21.49 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . C 2 5.837 -2.103 42.774 1 20.36 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . C 2 5.778 -1.38 41.522 1 19.81 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . C 2 5.702 -1.043 43.881 1 19.48 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . C 2 6.768 -1.134 44.819 1 19.24 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . C 2 5.734 0.308 43.148 1 19 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . C 2 6.606 1.153 43.854 1 18.39 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . C 2 6.265 -0.077 41.764 1 19.66 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . C 2 5.813 0.726 40.638 1 19.88 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . C 2 4.547 1.225 40.483 1 20.19 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . C 2 4.362 1.831 39.337 1 20.9 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . C 2 5.575 1.698 38.672 1 21.05 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . C 2 6.009 2.15 37.406 1 21.6 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . C 2 5.23 2.841 36.569 1 21.38 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . C 2 7.297 1.872 37.055 1 22.58 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . C 2 8.054 1.163 37.915 1 22.35 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . C 2 7.744 0.7 39.131 1 21.36 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . C 2 6.477 1.006 39.463 1 20.59 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #