data_8ZMC # _model_server_result.job_id pc5FSxiO2NcVEDQSdJF07g _model_server_result.datetime_utc '2025-07-26 05:41:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 8ZMC # _exptl.entry_id 8ZMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZMC _cell.length_a 50.877 _cell.length_b 59.966 _cell.length_c 185.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 322 n n N HN1 SAH sing 323 n n N HN2 SAH sing 324 n n CA CB SAH sing 325 n n CA C SAH sing 326 n n CA HA SAH sing 327 n n CB CG SAH sing 328 n n CB HB1 SAH sing 329 n n CB HB2 SAH sing 330 n n CG SD SAH sing 331 n n CG HG1 SAH sing 332 n n CG HG2 SAH sing 333 n n SD C5' SAH sing 334 n n C O SAH doub 335 n n C OXT SAH sing 336 n n OXT HXT SAH sing 337 n n C5' C4' SAH sing 338 n n C5' "H5'1" SAH sing 339 n n C5' "H5'2" SAH sing 340 n n C4' O4' SAH sing 341 n n C4' C3' SAH sing 342 n n C4' H4' SAH sing 343 n n O4' C1' SAH sing 344 n n C3' O3' SAH sing 345 n n C3' C2' SAH sing 346 n n C3' H3' SAH sing 347 n n O3' HO3' SAH sing 348 n n C2' O2' SAH sing 349 n n C2' C1' SAH sing 350 n n C2' H2' SAH sing 351 n n O2' HO2' SAH sing 352 n n C1' N9 SAH sing 353 n n C1' H1' SAH sing 354 n n N9 C8 SAH sing 355 n y N9 C4 SAH sing 356 n y C8 N7 SAH doub 357 n y C8 H8 SAH sing 358 n n N7 C5 SAH sing 359 n y C5 C6 SAH sing 360 n y C5 C4 SAH doub 361 n y C6 N6 SAH sing 362 n n C6 N1 SAH doub 363 n y N6 HN61 SAH sing 364 n n N6 HN62 SAH sing 365 n n N1 C2 SAH sing 366 n y C2 N3 SAH doub 367 n y C2 H2 SAH sing 368 n n N3 C4 SAH sing 369 n y # _atom_sites.entry_id 8ZMC _atom_sites.fract_transf_matrix[1][1] 0.019655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 A1L1Z A 1 302 302 A1L1Z LIG . E 4 GOL A 1 303 2 GOL GOL . F 4 GOL A 1 304 3 GOL GOL . G 4 GOL A 1 305 4 GOL GOL . H 4 GOL A 1 306 5 GOL GOL . I 2 SAH B 1 301 301 SAH SAH . J 4 GOL B 1 302 6 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 2 17.236 16.847 10.916 1 31.32 ? N SAH 301 B 1 HETATM 2 C CA SAH . . . I 2 17.392 18.107 10.128 1 35.27 ? CA SAH 301 B 1 HETATM 3 C CB SAH . . . I 2 16.065 18.589 9.524 1 37.33 ? CB SAH 301 B 1 HETATM 4 C CG SAH . . . I 2 16.036 18.585 7.993 1 41.91 ? CG SAH 301 B 1 HETATM 5 S SD SAH . . . I 2 15.653 16.955 7.291 1 47.56 ? SD SAH 301 B 1 HETATM 6 C C SAH . . . I 2 17.961 19.217 11.017 1 36.03 ? C SAH 301 B 1 HETATM 7 O O SAH . . . I 2 17.736 19.126 12.232 1 36.18 ? O SAH 301 B 1 HETATM 8 O OXT SAH . . . I 2 18.601 20.14 10.454 1 36.73 ? OXT SAH 301 B 1 HETATM 9 C C5' SAH . . . I 2 15.234 17.375 5.583 1 46.29 ? C5' SAH 301 B 1 HETATM 10 C C4' SAH . . . I 2 16.081 16.849 4.449 1 46.26 ? C4' SAH 301 B 1 HETATM 11 O O4' SAH . . . I 2 16.065 15.413 4.38 1 47.27 ? O4' SAH 301 B 1 HETATM 12 C C3' SAH . . . I 2 15.512 17.164 3.082 1 49.14 ? C3' SAH 301 B 1 HETATM 13 O O3' SAH . . . I 2 15.799 18.513 2.785 1 54.82 ? O3' SAH 301 B 1 HETATM 14 C C2' SAH . . . I 2 16.33 16.254 2.169 1 48.99 ? C2' SAH 301 B 1 HETATM 15 O O2' SAH . . . I 2 17.544 16.81 1.705 1 49.4 ? O2' SAH 301 B 1 HETATM 16 C C1' SAH . . . I 2 16.557 15.067 3.097 1 50.35 ? C1' SAH 301 B 1 HETATM 17 N N9 SAH . . . I 2 15.935 13.841 2.611 1 53.09 ? N9 SAH 301 B 1 HETATM 18 C C8 SAH . . . I 2 14.632 13.617 2.226 1 52.05 ? C8 SAH 301 B 1 HETATM 19 N N7 SAH . . . I 2 14.412 12.391 1.817 1 50.31 ? N7 SAH 301 B 1 HETATM 20 C C5 SAH . . . I 2 15.654 11.779 1.919 1 53.48 ? C5 SAH 301 B 1 HETATM 21 C C6 SAH . . . I 2 16.093 10.475 1.627 1 58.56 ? C6 SAH 301 B 1 HETATM 22 N N6 SAH . . . I 2 15.297 9.484 1.207 1 62.19 ? N6 SAH 301 B 1 HETATM 23 N N1 SAH . . . I 2 17.407 10.214 1.851 1 59.22 ? N1 SAH 301 B 1 HETATM 24 C C2 SAH . . . I 2 18.216 11.178 2.322 1 57.65 ? C2 SAH 301 B 1 HETATM 25 N N3 SAH . . . I 2 17.914 12.432 2.632 1 55.35 ? N3 SAH 301 B 1 HETATM 26 C C4 SAH . . . I 2 16.605 12.666 2.4 1 53.74 ? C4 SAH 301 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #