data_8ZMC
#
_model_server_result.job_id            u7ktnhCVomK7d1yy3tJUEw 
_model_server_result.datetime_utc      '2025-07-26 05:25:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zmc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    8ZMC 
#
_exptl.entry_id    8ZMC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              302.236 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Herbacetin 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZMC 
_cell.length_a            50.877 
_cell.length_b            59.966 
_cell.length_c            185.044 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZMC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H 1 1 
B,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H10 O7' 
_chem_comp.formula_weight    302.236 
_chem_comp.id                A1L1Z 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Herbacetin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-(4-hydroxyphenyl)-3,5,7,8-tetrakis(oxidanyl)chromen-4-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O7 C3 A1L1Z sing 1 n n 
C3 C2 A1L1Z doub 2 n y 
C3 C4 A1L1Z sing 3 n y 
C2 C1 A1L1Z sing 4 n y 
C4 C5 A1L1Z doub 5 n y 
C1 C6 A1L1Z doub 6 n y 
C5 C6 A1L1Z sing 7 n y 
C6 C7 A1L1Z sing 8 n n 
C7 O2 A1L1Z sing 9 n n 
C7 C8 A1L1Z doub 10 n n 
O2 C11 A1L1Z sing 11 n n 
O5 C12 A1L1Z sing 12 n n 
O6 C8 A1L1Z sing 13 n n 
C8 C9 A1L1Z sing 14 n n 
C11 C12 A1L1Z doub 15 n y 
C11 C10 A1L1Z sing 16 n y 
C12 C13 A1L1Z sing 17 n y 
C9 C10 A1L1Z sing 18 n n 
C9 O1 A1L1Z doub 19 n n 
C10 C15 A1L1Z doub 20 n y 
C13 O4 A1L1Z sing 21 n n 
C13 C14 A1L1Z doub 22 n y 
C15 C14 A1L1Z sing 23 n y 
C15 O3 A1L1Z sing 24 n n 
C4 H1 A1L1Z sing 25 n n 
C5 H2 A1L1Z sing 26 n n 
C1 H3 A1L1Z sing 27 n n 
C2 H4 A1L1Z sing 28 n n 
C14 H5 A1L1Z sing 29 n n 
O3 H6 A1L1Z sing 30 n n 
O4 H7 A1L1Z sing 31 n n 
O5 H8 A1L1Z sing 32 n n 
O6 H9 A1L1Z sing 33 n n 
O7 H10 A1L1Z sing 34 n n 
#
_atom_sites.entry_id                     8ZMC 
_atom_sites.fract_transf_matrix[1][1]    0.019655 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005404 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 301 301 SAH SAH . 
D 3 A1L1Z A 1 302 302 A1L1Z LIG . 
E 4 GOL A 1 303 2 GOL GOL . 
F 4 GOL A 1 304 3 GOL GOL . 
G 4 GOL A 1 305 4 GOL GOL . 
H 4 GOL A 1 306 5 GOL GOL . 
I 2 SAH B 1 301 301 SAH SAH . 
J 4 GOL B 1 302 6 GOL GOL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 A1L1Z . . . D 3 1.121 -6.541 51.976 1 56.23 ? C4 A1L1Z 302 A 1 
HETATM 2 C C5 A1L1Z . . . D 3 1.464 -6.275 53.287 1 56.42 ? C5 A1L1Z 302 A 1 
HETATM 3 C C6 A1L1Z . . . D 3 2.775 -6.44 53.726 1 59.13 ? C6 A1L1Z 302 A 1 
HETATM 4 C C7 A1L1Z . . . D 3 3.148 -6.141 55.111 1 63.47 ? C7 A1L1Z 302 A 1 
HETATM 5 C C8 A1L1Z . . . D 3 2.514 -6.621 56.213 1 67.87 ? C8 A1L1Z 302 A 1 
HETATM 6 C C10 A1L1Z . . . D 3 4.059 -5.329 57.64 1 72.04 ? C10 A1L1Z 302 A 1 
HETATM 7 C C13 A1L1Z . . . D 3 6.219 -3.545 57.715 1 73.11 ? C13 A1L1Z 302 A 1 
HETATM 8 C C15 A1L1Z . . . D 3 4.592 -4.873 58.881 1 69.94 ? C15 A1L1Z 302 A 1 
HETATM 9 C C1 A1L1Z . . . D 3 3.743 -6.858 52.815 1 58.67 ? C1 A1L1Z 302 A 1 
HETATM 10 C C2 A1L1Z . . . D 3 3.409 -7.104 51.499 1 56.62 ? C2 A1L1Z 302 A 1 
HETATM 11 C C3 A1L1Z . . . D 3 2.095 -6.956 51.076 1 53.49 ? C3 A1L1Z 302 A 1 
HETATM 12 C C9 A1L1Z . . . D 3 2.936 -6.256 57.544 1 71.66 ? C9 A1L1Z 302 A 1 
HETATM 13 O O1 A1L1Z . . . D 3 2.339 -6.725 58.546 1 77.8 ? O1 A1L1Z 302 A 1 
HETATM 14 C C11 A1L1Z . . . D 3 4.65 -4.867 56.46 1 72.44 ? C11 A1L1Z 302 A 1 
HETATM 15 O O2 A1L1Z . . . D 3 4.199 -5.268 55.231 1 69.18 ? O2 A1L1Z 302 A 1 
HETATM 16 C C12 A1L1Z . . . D 3 5.728 -3.978 56.484 1 68.69 ? C12 A1L1Z 302 A 1 
HETATM 17 C C14 A1L1Z . . . D 3 5.654 -3.993 58.91 1 72.92 ? C14 A1L1Z 302 A 1 
HETATM 18 O O3 A1L1Z . . . D 3 4.065 -5.287 60.055 1 64.91 ? O3 A1L1Z 302 A 1 
HETATM 19 O O4 A1L1Z . . . D 3 7.259 -2.687 57.76 1 72.93 ? O4 A1L1Z 302 A 1 
HETATM 20 O O5 A1L1Z . . . D 3 6.251 -3.558 55.303 1 53.94 ? O5 A1L1Z 302 A 1 
HETATM 21 O O6 A1L1Z . . . D 3 1.472 -7.481 56.088 1 70.71 ? O6 A1L1Z 302 A 1 
HETATM 22 O O7 A1L1Z . . . D 3 1.835 -7.21 49.763 1 46.04 ? O7 A1L1Z 302 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#