data_8ZMQ
#
_model_server_result.job_id            X4tosaxtShoLIRFvyfyMUw 
_model_server_result.datetime_utc      '2024-12-12 09:45:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zmq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":502}' 
#
_entry.id    8ZMQ 
#
_exptl.entry_id    8ZMQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.04 
_cell.angle_gamma         90 
_cell.entry_id            8ZMQ 
_cell.length_a            115.913 
_cell.length_b            125.108 
_cell.length_c            300.352 
_cell.Z_PDB               80 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZMQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
? monomeric 1 author_defined_assembly 12 
? monomeric 1 author_defined_assembly 13 
? monomeric 1 author_defined_assembly 14 
? monomeric 1 author_defined_assembly 15 
? monomeric 1 author_defined_assembly 16 
? monomeric 1 author_defined_assembly 17 
? monomeric 1 author_defined_assembly 18 
? monomeric 1 author_defined_assembly 19 
? monomeric 1 author_defined_assembly 20 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,U,V,UA 1 1 
B,W,X,Y,VA 2 1 
C,Z,WA 3 1 
D,AA,XA 4 1 
E,BA,YA 5 1 
F,CA,ZA 6 1 
G,DA,AB 7 1 
H,EA,BB 8 1 
I,FA,CB 9 1 
J,GA,DB 10 1 
K,HA,EB 11 1 
L,IA,JA,FB 12 1 
M,KA,LA,GB 13 1 
N,MA,NA,HB 14 1 
O,OA 15 1 
P,PA 16 1 
Q,QA 17 1 
R,RA 18 1 
S,SA,IB 19 1 
T,TA 20 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 V N N 
? 3 W N N 
? 3 Y N N 
? 3 LA N N 
? 3 NA N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 182 n n 
S C1 DMS sing 183 n n 
S C2 DMS sing 184 n n 
C1 H11 DMS sing 185 n n 
C1 H12 DMS sing 186 n n 
C1 H13 DMS sing 187 n n 
C2 H21 DMS sing 188 n n 
C2 H22 DMS sing 189 n n 
C2 H23 DMS sing 190 n n 
#
_atom_sites.entry_id                     8ZMQ 
_atom_sites.fract_transf_matrix[1][1]    0.008627 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000005 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007993 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003329 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 2 A1L12 A 1 501 501 A1L12 DRG . 
V 3 DMS A 1 502 502 DMS DMS . 
W 3 DMS B 1 501 503 DMS DMS . 
X 2 A1L12 B 1 502 501 A1L12 DRG . 
Y 3 DMS B 1 503 502 DMS DMS . 
Z 2 A1L12 C 1 501 501 A1L12 DRG . 
AA 2 A1L12 D 1 501 501 A1L12 DRG . 
BA 2 A1L12 E 1 501 501 A1L12 DRG . 
CA 2 A1L12 F 1 501 501 A1L12 DRG . 
DA 2 A1L12 G 1 501 501 A1L12 DRG . 
EA 2 A1L12 H 1 501 501 A1L12 DRG . 
FA 2 A1L12 I 1 501 501 A1L12 DRG . 
GA 2 A1L12 J 1 501 501 A1L12 DRG . 
HA 2 A1L12 K 1 501 501 A1L12 DRG . 
IA 2 A1L12 L 1 501 501 A1L12 DRG . 
JA 4 GOL L 1 502 502 GOL GOL . 
KA 2 A1L12 M 1 501 501 A1L12 DRG . 
LA 3 DMS M 1 502 502 DMS DMS . 
MA 2 A1L12 N 1 501 501 A1L12 DRG . 
NA 3 DMS N 1 502 502 DMS DMS . 
OA 2 A1L12 O 1 501 501 A1L12 DRG . 
PA 2 A1L12 P 1 501 501 A1L12 DRG . 
QA 2 A1L12 Q 1 501 501 A1L12 DRG . 
RA 2 A1L12 R 1 501 501 A1L12 DRG . 
SA 2 A1L12 S 1 501 501 A1L12 DRG . 
TA 2 A1L12 T 1 501 501 A1L12 DRG . 
UA 5 HOH A 1 601 4 HOH HOH . 
UA 5 HOH A 2 602 86 HOH HOH . 
UA 5 HOH A 3 603 22 HOH HOH . 
UA 5 HOH A 4 604 18 HOH HOH . 
UA 5 HOH A 5 605 21 HOH HOH . 
UA 5 HOH A 6 606 26 HOH HOH . 
UA 5 HOH A 7 607 90 HOH HOH . 
UA 5 HOH A 8 608 25 HOH HOH . 
UA 5 HOH A 9 609 121 HOH HOH . 
UA 5 HOH A 10 610 28 HOH HOH . 
UA 5 HOH A 11 611 23 HOH HOH . 
UA 5 HOH A 12 612 112 HOH HOH . 
UA 5 HOH A 13 613 27 HOH HOH . 
UA 5 HOH A 14 614 104 HOH HOH . 
UA 5 HOH A 15 615 24 HOH HOH . 
VA 5 HOH B 1 601 29 HOH HOH . 
VA 5 HOH B 2 602 2 HOH HOH . 
VA 5 HOH B 3 603 88 HOH HOH . 
VA 5 HOH B 4 604 36 HOH HOH . 
VA 5 HOH B 5 605 37 HOH HOH . 
VA 5 HOH B 6 606 35 HOH HOH . 
VA 5 HOH B 7 607 32 HOH HOH . 
VA 5 HOH B 8 608 38 HOH HOH . 
VA 5 HOH B 9 609 31 HOH HOH . 
VA 5 HOH B 10 610 33 HOH HOH . 
VA 5 HOH B 11 611 105 HOH HOH . 
VA 5 HOH B 12 612 30 HOH HOH . 
VA 5 HOH B 13 613 34 HOH HOH . 
WA 5 HOH C 1 601 7 HOH HOH . 
WA 5 HOH C 2 602 39 HOH HOH . 
WA 5 HOH C 3 603 102 HOH HOH . 
WA 5 HOH C 4 604 87 HOH HOH . 
WA 5 HOH C 5 605 99 HOH HOH . 
WA 5 HOH C 6 606 40 HOH HOH . 
WA 5 HOH C 7 607 85 HOH HOH . 
WA 5 HOH C 8 608 91 HOH HOH . 
WA 5 HOH C 9 609 119 HOH HOH . 
XA 5 HOH D 1 601 9 HOH HOH . 
XA 5 HOH D 2 602 97 HOH HOH . 
XA 5 HOH D 3 603 106 HOH HOH . 
XA 5 HOH D 4 604 41 HOH HOH . 
XA 5 HOH D 5 605 94 HOH HOH . 
XA 5 HOH D 6 606 69 HOH HOH . 
XA 5 HOH D 7 607 107 HOH HOH . 
YA 5 HOH E 1 601 14 HOH HOH . 
YA 5 HOH E 2 602 1 HOH HOH . 
YA 5 HOH E 3 603 42 HOH HOH . 
YA 5 HOH E 4 604 12 HOH HOH . 
YA 5 HOH E 5 605 10 HOH HOH . 
YA 5 HOH E 6 606 93 HOH HOH . 
YA 5 HOH E 7 607 46 HOH HOH . 
YA 5 HOH E 8 608 122 HOH HOH . 
YA 5 HOH E 9 609 44 HOH HOH . 
YA 5 HOH E 10 610 123 HOH HOH . 
YA 5 HOH E 11 611 43 HOH HOH . 
YA 5 HOH E 12 612 47 HOH HOH . 
YA 5 HOH E 13 613 101 HOH HOH . 
YA 5 HOH E 14 614 103 HOH HOH . 
YA 5 HOH E 15 615 45 HOH HOH . 
ZA 5 HOH F 1 601 19 HOH HOH . 
ZA 5 HOH F 2 602 3 HOH HOH . 
ZA 5 HOH F 3 603 113 HOH HOH . 
ZA 5 HOH F 4 604 49 HOH HOH . 
ZA 5 HOH F 5 605 48 HOH HOH . 
ZA 5 HOH F 6 606 51 HOH HOH . 
ZA 5 HOH F 7 607 52 HOH HOH . 
ZA 5 HOH F 8 608 53 HOH HOH . 
ZA 5 HOH F 9 609 50 HOH HOH . 
AB 5 HOH G 1 601 54 HOH HOH . 
AB 5 HOH G 2 602 78 HOH HOH . 
AB 5 HOH G 3 603 6 HOH HOH . 
AB 5 HOH G 4 604 98 HOH HOH . 
AB 5 HOH G 5 605 118 HOH HOH . 
AB 5 HOH G 6 606 55 HOH HOH . 
AB 5 HOH G 7 607 56 HOH HOH . 
AB 5 HOH G 8 608 17 HOH HOH . 
BB 5 HOH H 1 601 16 HOH HOH . 
BB 5 HOH H 2 602 100 HOH HOH . 
BB 5 HOH H 3 603 57 HOH HOH . 
BB 5 HOH H 4 604 120 HOH HOH . 
BB 5 HOH H 5 605 109 HOH HOH . 
CB 5 HOH I 1 601 58 HOH HOH . 
CB 5 HOH I 2 602 62 HOH HOH . 
CB 5 HOH I 3 603 5 HOH HOH . 
CB 5 HOH I 4 604 61 HOH HOH . 
CB 5 HOH I 5 605 60 HOH HOH . 
CB 5 HOH I 6 606 116 HOH HOH . 
CB 5 HOH I 7 607 59 HOH HOH . 
CB 5 HOH I 8 608 111 HOH HOH . 
DB 5 HOH J 1 601 11 HOH HOH . 
DB 5 HOH J 2 602 63 HOH HOH . 
DB 5 HOH J 3 603 64 HOH HOH . 
DB 5 HOH J 4 604 66 HOH HOH . 
DB 5 HOH J 5 605 68 HOH HOH . 
DB 5 HOH J 6 606 70 HOH HOH . 
DB 5 HOH J 7 607 117 HOH HOH . 
DB 5 HOH J 8 608 67 HOH HOH . 
DB 5 HOH J 9 609 15 HOH HOH . 
DB 5 HOH J 10 610 65 HOH HOH . 
DB 5 HOH J 11 611 108 HOH HOH . 
DB 5 HOH J 12 612 110 HOH HOH . 
EB 5 HOH K 1 601 13 HOH HOH . 
EB 5 HOH K 2 602 71 HOH HOH . 
EB 5 HOH K 3 603 20 HOH HOH . 
EB 5 HOH K 4 604 92 HOH HOH . 
FB 5 HOH L 1 601 8 HOH HOH . 
FB 5 HOH L 2 602 76 HOH HOH . 
FB 5 HOH L 3 603 74 HOH HOH . 
FB 5 HOH L 4 604 75 HOH HOH . 
FB 5 HOH L 5 605 72 HOH HOH . 
FB 5 HOH L 6 606 73 HOH HOH . 
FB 5 HOH L 7 607 79 HOH HOH . 
FB 5 HOH L 8 608 115 HOH HOH . 
FB 5 HOH L 9 609 77 HOH HOH . 
FB 5 HOH L 10 610 114 HOH HOH . 
FB 5 HOH L 11 611 80 HOH HOH . 
GB 5 HOH M 1 601 81 HOH HOH . 
GB 5 HOH M 2 602 89 HOH HOH . 
HB 5 HOH N 1 601 96 HOH HOH . 
HB 5 HOH N 2 602 82 HOH HOH . 
HB 5 HOH N 3 603 83 HOH HOH . 
IB 5 HOH S 1 601 95 HOH HOH . 
IB 5 HOH S 2 602 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . V 3 30.753 -31.383 36.985 1 108.77 ? S DMS 502 A 1 
HETATM 2 O O DMS . . . V 3 31.62 -30.516 37.855 1 103.72 ? O DMS 502 A 1 
HETATM 3 C C1 DMS . . . V 3 31.43 -31.291 35.345 1 102.41 ? C1 DMS 502 A 1 
HETATM 4 C C2 DMS . . . V 3 31.204 -33.064 37.35 1 106.87 ? C2 DMS 502 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#