data_8ZMT # _model_server_result.job_id ttzV4gJWeP3UaqzDuZcxDw _model_server_result.datetime_utc '2024-12-26 01:00:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":403}' # _entry.id 8ZMT # _exptl.entry_id 8ZMT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 691.959 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZMT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 Z N N ? 15 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 29 F CYS 101 1_555 F SG CYS 51 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 O SG CYS 29 Q CYS 101 1_555 O SG CYS 51 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 BA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc10 M NE2 HIS 44 O HIS 105 1_555 OA FE HEM . O HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id 8PE _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P 8PE doub 101 n n O11 P 8PE sing 102 n n P O14 8PE sing 103 n n P O13 8PE sing 104 n n C12 N 8PE sing 105 n n N HN 8PE sing 106 n n N HNA 8PE sing 107 n n O11 C1 8PE sing 108 n n O13 C11 8PE sing 109 n n O14 HO14 8PE sing 110 n n C12 C11 8PE sing 111 n n C11 H11 8PE sing 112 n n C11 H11A 8PE sing 113 n n C12 H12 8PE sing 114 n n C12 H12A 8PE sing 115 n n C2 C1 8PE sing 116 n n C1 H1 8PE sing 117 n n C1 H1A 8PE sing 118 n n C3 C2 8PE sing 119 n n C2 O21 8PE sing 120 n n C2 H2 8PE sing 121 n n O31 C3 8PE sing 122 n n C3 H3 8PE sing 123 n n C3 H3A 8PE sing 124 n n C31 O31 8PE sing 125 n n O32 C31 8PE doub 126 n n C32 C31 8PE sing 127 n n C32 C33 8PE sing 128 n n C32 H32 8PE sing 129 n n C32 H32A 8PE sing 130 n n C33 C34 8PE sing 131 n n C33 H33 8PE sing 132 n n C33 H33A 8PE sing 133 n n C35 C34 8PE sing 134 n n C34 H34 8PE sing 135 n n C34 H34A 8PE sing 136 n n C35 C36 8PE sing 137 n n C35 H35 8PE sing 138 n n C35 H35A 8PE sing 139 n n C37 C36 8PE sing 140 n n C36 H36 8PE sing 141 n n C36 H36A 8PE sing 142 n n C38 C37 8PE sing 143 n n C37 H37 8PE sing 144 n n C37 H37A 8PE sing 145 n n C39 C38 8PE sing 146 n n C38 H38 8PE sing 147 n n C38 H38A 8PE sing 148 n n C39 C3A 8PE sing 149 n n C39 H39 8PE sing 150 n n C39 H39A 8PE sing 151 n n C3B C3A 8PE sing 152 n n C3A H3AA 8PE sing 153 n n C3A H3AB 8PE sing 154 n n C3C C3B 8PE sing 155 n n C3B H3B 8PE sing 156 n n C3B H3BA 8PE sing 157 n n C3C C3D 8PE sing 158 n n C3C H3C 8PE sing 159 n n C3C H3CA 8PE sing 160 n n C3E C3D 8PE sing 161 n n C3D H3D 8PE sing 162 n n C3D H3DA 8PE sing 163 n n C3F C3E 8PE sing 164 n n C3E H3E 8PE sing 165 n n C3E H3EA 8PE sing 166 n n C3G C3F 8PE sing 167 n n C3F H3F 8PE sing 168 n n C3F H3FA 8PE sing 169 n n C3G C3H 8PE sing 170 n n C3G H3G 8PE sing 171 n n C3G H3GA 8PE sing 172 n n C3I C3H 8PE sing 173 n n C3H H3H 8PE sing 174 n n C3H H3HA 8PE sing 175 n n C3I H3I 8PE sing 176 n n C3I H3IA 8PE sing 177 n n C3I H3IB 8PE sing 178 n n O21 C21 8PE sing 179 n n C21 O22 8PE doub 180 n n C21 C22 8PE sing 181 n n C23 C22 8PE sing 182 n n C22 H22 8PE sing 183 n n C22 H22A 8PE sing 184 n n C23 C24 8PE sing 185 n n C23 H23 8PE sing 186 n n C23 H23A 8PE sing 187 n n C25 C24 8PE sing 188 n n C24 H24 8PE sing 189 n n C24 H24A 8PE sing 190 n n C25 C26 8PE sing 191 n n C25 H25 8PE sing 192 n n C25 H25A 8PE sing 193 n n C27 C26 8PE sing 194 n n C26 H26 8PE sing 195 n n C26 H26A 8PE sing 196 n n C27 C28 8PE sing 197 n n C27 H27 8PE sing 198 n n C27 H27A 8PE sing 199 n n C29 C28 8PE sing 200 n n C28 H28 8PE sing 201 n n C28 H28A 8PE sing 202 n n C29 C2A 8PE sing 203 n n C29 H29 8PE sing 204 n n C29 H29A 8PE sing 205 n n C2B C2A 8PE sing 206 n n C2A H2A 8PE sing 207 n n C2A H2AA 8PE sing 208 n n C2C C2B 8PE sing 209 n n C2B H2B 8PE sing 210 n n C2B H2BA 8PE sing 211 n n C2C C2D 8PE sing 212 n n C2C H2C 8PE sing 213 n n C2C H2CA 8PE sing 214 n n C2E C2D 8PE sing 215 n n C2D H2D 8PE sing 216 n n C2D H2DA 8PE sing 217 n n C2E H2E 8PE sing 218 n n C2E H2EA 8PE sing 219 n n C2E H2EB 8PE sing 220 n n # _atom_sites.entry_id 8ZMT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 A1D6P C 1 401 401 A1D6P LIG . V 12 CN3 C 1 402 406 CN3 CN3 . W 13 9PE C 1 403 407 9PE 9PE . X 14 HEM C 1 404 807 HEM HEM . Y 14 HEM C 1 405 812 HEM HEM . Z 15 8PE C 1 406 813 8PE 8PE . AA 16 UQ6 C 1 407 816 UQ6 UQ6 . BA 14 HEM D 1 401 809 HEM HEM . CA 17 6PH D 1 402 810 6PH 6PH . DA 18 FES E 1 301 302 FES FES . EA 17 6PH E 1 302 401 6PH 6PH . FA 17 6PH L 1 501 403 6PH 6PH . GA 11 A1D6P N 1 401 402 A1D6P LIG . HA 16 UQ6 N 1 402 403 UQ6 UQ6 . IA 15 8PE N 1 403 404 8PE 8PE . JA 13 9PE N 1 404 405 9PE 9PE . KA 14 HEM N 1 405 808 HEM HEM . LA 19 CN5 N 1 406 814 CN5 CN5 . MA 12 CN3 N 1 407 815 CN3 CN3 . NA 14 HEM N 1 408 1633 HEM HEM . OA 14 HEM O 1 401 1215 HEM HEM . PA 18 FES P 1 301 301 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 8PE . . . IA 15 167.851 121.319 154.53 1 50.34 ? P 8PE 403 N 1 HETATM 2 N N 8PE . . . IA 15 165.164 117.57 156.439 1 50.34 ? N 8PE 403 N 1 HETATM 3 O O11 8PE . . . IA 15 167.87 121.699 156.129 1 50.34 ? O11 8PE 403 N 1 HETATM 4 O O12 8PE . . . IA 15 169.259 121.113 154.03 1 50.34 ? O12 8PE 403 N 1 HETATM 5 O O13 8PE . . . IA 15 166.97 119.936 154.373 1 50.34 ? O13 8PE 403 N 1 HETATM 6 O O14 8PE . . . IA 15 167.217 122.436 153.741 1 50.34 ? O14 8PE 403 N 1 HETATM 7 C C11 8PE . . . IA 15 166.166 119.549 155.452 1 50.34 ? C11 8PE 403 N 1 HETATM 8 C C12 8PE . . . IA 15 165.544 118.183 155.179 1 50.34 ? C12 8PE 403 N 1 HETATM 9 C C1 8PE . . . IA 15 169.02 121.418 156.867 1 50.34 ? C1 8PE 403 N 1 HETATM 10 C C2 8PE . . . IA 15 168.672 121.416 158.348 1 50.34 ? C2 8PE 403 N 1 HETATM 11 C C3 8PE . . . IA 15 167.644 122.509 158.64 1 50.34 ? C3 8PE 403 N 1 HETATM 12 O O31 8PE . . . IA 15 168.073 123.752 158.174 1 50.34 ? O31 8PE 403 N 1 HETATM 13 O O32 8PE . . . IA 15 169.436 124.166 159.885 1 50.34 ? O32 8PE 403 N 1 HETATM 14 C C31 8PE . . . IA 15 168.593 124.578 159.17 1 50.34 ? C31 8PE 403 N 1 HETATM 15 C C32 8PE . . . IA 15 168.105 126.014 159.331 1 50.34 ? C32 8PE 403 N 1 HETATM 16 C C33 8PE . . . IA 15 167.553 126.226 160.732 1 50.34 ? C33 8PE 403 N 1 HETATM 17 C C34 8PE . . . IA 15 168.618 126.642 161.74 1 50.34 ? C34 8PE 403 N 1 HETATM 18 C C35 8PE . . . IA 15 168.066 126.387 163.134 1 50.34 ? C35 8PE 403 N 1 HETATM 19 C C36 8PE . . . IA 15 169.113 125.701 164 1 50.34 ? C36 8PE 403 N 1 HETATM 20 C C37 8PE . . . IA 15 168.525 125.54 165.395 1 50.34 ? C37 8PE 403 N 1 HETATM 21 C C38 8PE . . . IA 15 169.422 126.251 166.398 1 50.34 ? C38 8PE 403 N 1 HETATM 22 C C39 8PE . . . IA 15 168.553 126.998 167.401 1 50.34 ? C39 8PE 403 N 1 HETATM 23 C C3A 8PE . . . IA 15 169.458 127.689 168.413 1 50.34 ? C3A 8PE 403 N 1 HETATM 24 C C3B 8PE . . . IA 15 170.203 128.819 167.718 1 50.34 ? C3B 8PE 403 N 1 HETATM 25 C C3C 8PE . . . IA 15 171.474 129.13 168.489 1 50.34 ? C3C 8PE 403 N 1 HETATM 26 C C3D 8PE . . . IA 15 172.255 130.19 167.728 1 50.34 ? C3D 8PE 403 N 1 HETATM 27 C C3E 8PE . . . IA 15 171.608 131.545 167.969 1 50.34 ? C3E 8PE 403 N 1 HETATM 28 C C3F 8PE . . . IA 15 172.5 132.622 167.371 1 50.34 ? C3F 8PE 403 N 1 HETATM 29 C C3G 8PE . . . IA 15 172.372 133.898 168.191 1 50.34 ? C3G 8PE 403 N 1 HETATM 30 C C3H 8PE . . . IA 15 173.521 134.837 167.845 1 50.34 ? C3H 8PE 403 N 1 HETATM 31 C C3I 8PE . . . IA 15 173.421 136.088 168.707 1 50.34 ? C3I 8PE 403 N 1 HETATM 32 O O21 8PE . . . IA 15 168.136 120.174 158.693 1 50.34 ? O21 8PE 403 N 1 HETATM 33 O O22 8PE . . . IA 15 169.63 119.281 160.091 1 50.34 ? O22 8PE 403 N 1 HETATM 34 C C21 8PE . . . IA 15 168.534 119.693 159.942 1 50.34 ? C21 8PE 403 N 1 HETATM 35 C C22 8PE . . . IA 15 167.559 119.694 161.114 1 50.34 ? C22 8PE 403 N 1 HETATM 36 C C23 8PE . . . IA 15 167.918 120.836 162.055 1 50.34 ? C23 8PE 403 N 1 HETATM 37 C C24 8PE . . . IA 15 167.962 120.299 163.48 1 50.34 ? C24 8PE 403 N 1 HETATM 38 C C25 8PE . . . IA 15 168.803 121.244 164.327 1 50.34 ? C25 8PE 403 N 1 HETATM 39 C C26 8PE . . . IA 15 168.98 120.672 165.729 1 50.34 ? C26 8PE 403 N 1 HETATM 40 C C27 8PE . . . IA 15 170.191 121.337 166.372 1 50.34 ? C27 8PE 403 N 1 HETATM 41 C C28 8PE . . . IA 15 169.723 122.466 167.284 1 50.34 ? C28 8PE 403 N 1 HETATM 42 C C29 8PE . . . IA 15 169.628 121.979 168.728 1 50.34 ? C29 8PE 403 N 1 HETATM 43 C C2A 8PE . . . IA 15 169.549 123.196 169.649 1 50.34 ? C2A 8PE 403 N 1 HETATM 44 C C2B 8PE . . . IA 15 169.443 122.747 171.104 1 50.34 ? C2B 8PE 403 N 1 HETATM 45 C C2C 8PE . . . IA 15 169.356 123.982 171.997 1 50.34 ? C2C 8PE 403 N 1 HETATM 46 C C2D 8PE . . . IA 15 168.718 123.621 173.34 1 50.34 ? C2D 8PE 403 N 1 HETATM 47 C C2E 8PE . . . IA 15 169.668 122.751 174.16 1 50.34 ? C2E 8PE 403 N 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #