data_8ZMT
#
_model_server_result.job_id            oNytY8EaEHVeS-DJyrvfjg 
_model_server_result.datetime_utc      '2024-12-26 01:02:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zmt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":403}' 
#
_entry.id    8ZMT 
#
_exptl.entry_id    8ZMT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              593.773 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZMT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZMT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 W N N 
? 13 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 F SG CYS 29 F CYS 101 1_555 F SG CYS 51 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 O SG CYS 29 Q CYS 101 1_555 O SG CYS 51 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 BA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc10 M NE2 HIS 44 O HIS 105 1_555 OA FE HEM . O HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
#
_chem_comp.formula           'C30 H60 N O8 P' 
_chem_comp.formula_weight    593.773 
_chem_comp.id                9PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P 9PE doub 221 n n 
P O11 9PE sing 222 n n 
P O14 9PE sing 223 n n 
P O13 9PE sing 224 n n 
C12 N 9PE sing 225 n n 
N HN 9PE sing 226 n n 
N HNA 9PE sing 227 n n 
O11 C1 9PE sing 228 n n 
O13 C11 9PE sing 229 n n 
O14 HO14 9PE sing 230 n n 
C11 C12 9PE sing 231 n n 
C11 H11 9PE sing 232 n n 
C11 H11A 9PE sing 233 n n 
C12 H12 9PE sing 234 n n 
C12 H12A 9PE sing 235 n n 
C2 C1 9PE sing 236 n n 
C1 H1 9PE sing 237 n n 
C1 H1A 9PE sing 238 n n 
O21 C2 9PE sing 239 n n 
C2 C3 9PE sing 240 n n 
C2 H2 9PE sing 241 n n 
O31 C3 9PE sing 242 n n 
C3 H3 9PE sing 243 n n 
C3 H3A 9PE sing 244 n n 
O31 C31 9PE sing 245 n n 
C31 O32 9PE doub 246 n n 
C32 C31 9PE sing 247 n n 
C33 C32 9PE sing 248 n n 
C32 H32 9PE sing 249 n n 
C32 H32A 9PE sing 250 n n 
C34 C33 9PE sing 251 n n 
C33 H33 9PE sing 252 n n 
C33 H33A 9PE sing 253 n n 
C35 C34 9PE sing 254 n n 
C34 H34 9PE sing 255 n n 
C34 H34A 9PE sing 256 n n 
C36 C35 9PE sing 257 n n 
C35 H35 9PE sing 258 n n 
C35 H35A 9PE sing 259 n n 
C37 C36 9PE sing 260 n n 
C36 H36 9PE sing 261 n n 
C36 H36A 9PE sing 262 n n 
C37 H37 9PE sing 263 n n 
C37 H37A 9PE sing 264 n n 
C37 H37B 9PE sing 265 n n 
C21 O21 9PE sing 266 n n 
O22 C21 9PE doub 267 n n 
C22 C21 9PE sing 268 n n 
C23 C22 9PE sing 269 n n 
C22 H22 9PE sing 270 n n 
C22 H22A 9PE sing 271 n n 
C23 C24 9PE sing 272 n n 
C23 H23 9PE sing 273 n n 
C23 H23A 9PE sing 274 n n 
C25 C24 9PE sing 275 n n 
C24 H24 9PE sing 276 n n 
C24 H24A 9PE sing 277 n n 
C26 C25 9PE sing 278 n n 
C25 H25 9PE sing 279 n n 
C25 H25A 9PE sing 280 n n 
C27 C26 9PE sing 281 n n 
C26 H26 9PE sing 282 n n 
C26 H26A 9PE sing 283 n n 
C28 C27 9PE sing 284 n n 
C27 H27 9PE sing 285 n n 
C27 H27A 9PE sing 286 n n 
C28 C29 9PE sing 287 n n 
C28 H28 9PE sing 288 n n 
C28 H28A 9PE sing 289 n n 
C2A C29 9PE sing 290 n n 
C29 H29 9PE sing 291 n n 
C29 H29A 9PE sing 292 n n 
C2A C2B 9PE sing 293 n n 
C2A H2A 9PE sing 294 n n 
C2A H2AA 9PE sing 295 n n 
C2C C2B 9PE sing 296 n n 
C2B H2B 9PE sing 297 n n 
C2B H2BA 9PE sing 298 n n 
C2C C2D 9PE sing 299 n n 
C2C H2C 9PE sing 300 n n 
C2C H2CA 9PE sing 301 n n 
C2E C2D 9PE sing 302 n n 
C2D H2D 9PE sing 303 n n 
C2D H2DA 9PE sing 304 n n 
C2E C2F 9PE sing 305 n n 
C2E H2E 9PE sing 306 n n 
C2E H2EA 9PE sing 307 n n 
C2G C2F 9PE sing 308 n n 
C2F H2F 9PE sing 309 n n 
C2F H2FA 9PE sing 310 n n 
C2H C2G 9PE sing 311 n n 
C2G H2G 9PE sing 312 n n 
C2G H2GA 9PE sing 313 n n 
C2I C2H 9PE sing 314 n n 
C2H H2H 9PE sing 315 n n 
C2H H2HA 9PE sing 316 n n 
C2I H2I 9PE sing 317 n n 
C2I H2IA 9PE sing 318 n n 
C2I H2IB 9PE sing 319 n n 
#
_atom_sites.entry_id                     8ZMT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 A1D6P C 1 401 401 A1D6P LIG . 
V 12 CN3 C 1 402 406 CN3 CN3 . 
W 13 9PE C 1 403 407 9PE 9PE . 
X 14 HEM C 1 404 807 HEM HEM . 
Y 14 HEM C 1 405 812 HEM HEM . 
Z 15 8PE C 1 406 813 8PE 8PE . 
AA 16 UQ6 C 1 407 816 UQ6 UQ6 . 
BA 14 HEM D 1 401 809 HEM HEM . 
CA 17 6PH D 1 402 810 6PH 6PH . 
DA 18 FES E 1 301 302 FES FES . 
EA 17 6PH E 1 302 401 6PH 6PH . 
FA 17 6PH L 1 501 403 6PH 6PH . 
GA 11 A1D6P N 1 401 402 A1D6P LIG . 
HA 16 UQ6 N 1 402 403 UQ6 UQ6 . 
IA 15 8PE N 1 403 404 8PE 8PE . 
JA 13 9PE N 1 404 405 9PE 9PE . 
KA 14 HEM N 1 405 808 HEM HEM . 
LA 19 CN5 N 1 406 814 CN5 CN5 . 
MA 12 CN3 N 1 407 815 CN3 CN3 . 
NA 14 HEM N 1 408 1633 HEM HEM . 
OA 14 HEM O 1 401 1215 HEM HEM . 
PA 18 FES P 1 301 301 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 9PE . . . W 13 170.472 151.555 150.542 1 58.05 ? P 9PE 403 C 1 
HETATM 2 N N 9PE . . . W 13 168.594 152.241 146.042 1 58.05 ? N 9PE 403 C 1 
HETATM 3 O O11 9PE . . . W 13 170.942 152.374 151.887 1 58.05 ? O11 9PE 403 C 1 
HETATM 4 O O12 9PE . . . W 13 171.675 150.93 149.89 1 58.05 ? O12 9PE 403 C 1 
HETATM 5 O O13 9PE . . . W 13 169.761 152.586 149.479 1 58.05 ? O13 9PE 403 C 1 
HETATM 6 O O14 9PE . . . W 13 169.489 150.481 150.923 1 58.05 ? O14 9PE 403 C 1 
HETATM 7 C C11 9PE . . . W 13 169.03 152.033 148.423 1 58.05 ? C11 9PE 403 C 1 
HETATM 8 C C12 9PE . . . W 13 169.074 152.96 147.21 1 58.05 ? C12 9PE 403 C 1 
HETATM 9 C C1 9PE . . . W 13 171.651 151.694 152.88 1 58.05 ? C1 9PE 403 C 1 
HETATM 10 C C2 9PE . . . W 13 170.786 151.585 154.14 1 58.05 ? C2 9PE 403 C 1 
HETATM 11 C C3 9PE . . . W 13 171.668 151.479 155.385 1 58.05 ? C3 9PE 403 C 1 
HETATM 12 O O31 9PE . . . W 13 171.298 150.357 156.129 1 58.05 ? O31 9PE 403 C 1 
HETATM 13 O O32 9PE . . . W 13 172.061 150.848 158.157 1 58.05 ? O32 9PE 403 C 1 
HETATM 14 C C31 9PE . . . W 13 171.118 150.644 157.481 1 58.05 ? C31 9PE 403 C 1 
HETATM 15 C C32 9PE . . . W 13 169.723 150.704 158.09 1 58.05 ? C32 9PE 403 C 1 
HETATM 16 C C33 9PE . . . W 13 169.568 152 158.88 1 58.05 ? C33 9PE 403 C 1 
HETATM 17 C C34 9PE . . . W 13 168.499 151.802 159.949 1 58.05 ? C34 9PE 403 C 1 
HETATM 18 C C35 9PE . . . W 13 167.936 153.149 160.387 1 58.05 ? C35 9PE 403 C 1 
HETATM 19 C C36 9PE . . . W 13 167.51 153.056 161.849 1 58.05 ? C36 9PE 403 C 1 
HETATM 20 C C37 9PE . . . W 13 166.783 154.329 162.272 1 58.05 ? C37 9PE 403 C 1 
HETATM 21 O O21 9PE . . . W 13 169.847 152.635 154.221 1 58.05 ? O21 9PE 403 C 1 
HETATM 22 O O22 9PE . . . W 13 171.095 154.52 154.407 1 58.05 ? O22 9PE 403 C 1 
HETATM 23 C C21 9PE . . . W 13 170.194 153.863 154.806 1 58.05 ? C21 9PE 403 C 1 
HETATM 24 C C22 9PE . . . W 13 169.369 154.395 155.969 1 58.05 ? C22 9PE 403 C 1 
HETATM 25 C C23 9PE . . . W 13 169.449 155.917 155.974 1 58.05 ? C23 9PE 403 C 1 
HETATM 26 C C24 9PE . . . W 13 168.104 156.482 156.413 1 58.05 ? C24 9PE 403 C 1 
HETATM 27 C C25 9PE . . . W 13 168.191 156.93 157.866 1 58.05 ? C25 9PE 403 C 1 
HETATM 28 C C26 9PE . . . W 13 166.792 156.968 158.47 1 58.05 ? C26 9PE 403 C 1 
HETATM 29 C C27 9PE . . . W 13 165.993 158.088 157.812 1 58.05 ? C27 9PE 403 C 1 
HETATM 30 C C28 9PE . . . W 13 164.897 158.578 158.754 1 58.05 ? C28 9PE 403 C 1 
HETATM 31 C C29 9PE . . . W 13 163.935 157.433 159.049 1 58.05 ? C29 9PE 403 C 1 
HETATM 32 C C2A 9PE . . . W 13 162.497 157.913 158.905 1 58.05 ? C2A 9PE 403 C 1 
HETATM 33 C C2B 9PE . . . W 13 161.584 156.692 158.932 1 58.05 ? C2B 9PE 403 C 1 
HETATM 34 C C2C 9PE . . . W 13 160.385 156.928 158.024 1 58.05 ? C2C 9PE 403 C 1 
HETATM 35 C C2D 9PE . . . W 13 159.394 155.784 158.205 1 58.05 ? C2D 9PE 403 C 1 
HETATM 36 C C2E 9PE . . . W 13 158.824 155.834 159.619 1 58.05 ? C2E 9PE 403 C 1 
HETATM 37 C C2F 9PE . . . W 13 157.626 154.897 159.732 1 58.05 ? C2F 9PE 403 C 1 
HETATM 38 C C2G 9PE . . . W 13 157.659 154.199 161.088 1 58.05 ? C2G 9PE 403 C 1 
HETATM 39 C C2H 9PE . . . W 13 156.59 154.824 161.978 1 58.05 ? C2H 9PE 403 C 1 
HETATM 40 C C2I 9PE . . . W 13 155.501 153.797 162.267 1 58.05 ? C2I 9PE 403 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    67 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           40 
#