data_8ZMT
#
_model_server_result.job_id            ARFna_FXam0appEslimmaQ 
_model_server_result.datetime_utc      '2024-12-26 01:07:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zmt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":404}' 
#
_entry.id    8ZMT 
#
_exptl.entry_id    8ZMT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZMT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZMT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 14 X N N 
? 14 Y N N 
? 14 BA N N 
? 14 KA N N 
? 14 NA N N 
? 14 OA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 F SG CYS 29 F CYS 101 1_555 F SG CYS 51 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 O SG CYS 29 Q CYS 101 1_555 O SG CYS 51 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 BA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc10 M NE2 HIS 44 O HIS 105 1_555 OA FE HEM . O HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 714 n n 
CHA C4D HEM doub 715 n n 
CHA HHA HEM sing 716 n n 
CHB C4A HEM sing 717 n n 
CHB C1B HEM doub 718 n n 
CHB HHB HEM sing 719 n n 
CHC C4B HEM sing 720 n n 
CHC C1C HEM doub 721 n n 
CHC HHC HEM sing 722 n n 
CHD C4C HEM doub 723 n n 
CHD C1D HEM sing 724 n n 
CHD HHD HEM sing 725 n n 
C1A C2A HEM doub 726 n y 
C1A NA HEM sing 727 n y 
C2A C3A HEM sing 728 n y 
C2A CAA HEM sing 729 n n 
C3A C4A HEM doub 730 n y 
C3A CMA HEM sing 731 n n 
C4A NA HEM sing 732 n y 
CMA HMA HEM sing 733 n n 
CMA HMAA HEM sing 734 n n 
CMA HMAB HEM sing 735 n n 
CAA CBA HEM sing 736 n n 
CAA HAA HEM sing 737 n n 
CAA HAAA HEM sing 738 n n 
CBA CGA HEM sing 739 n n 
CBA HBA HEM sing 740 n n 
CBA HBAA HEM sing 741 n n 
CGA O1A HEM doub 742 n n 
CGA O2A HEM sing 743 n n 
C1B C2B HEM sing 744 n n 
C1B NB HEM sing 745 n n 
C2B C3B HEM doub 746 n n 
C2B CMB HEM sing 747 n n 
C3B C4B HEM sing 748 n n 
C3B CAB HEM sing 749 n n 
C4B NB HEM doub 750 n n 
CMB HMB HEM sing 751 n n 
CMB HMBA HEM sing 752 n n 
CMB HMBB HEM sing 753 n n 
CAB CBB HEM doub 754 n n 
CAB HAB HEM sing 755 n n 
CBB HBB HEM sing 756 n n 
CBB HBBA HEM sing 757 n n 
C1C C2C HEM sing 758 n y 
C1C NC HEM sing 759 n y 
C2C C3C HEM doub 760 n y 
C2C CMC HEM sing 761 n n 
C3C C4C HEM sing 762 n y 
C3C CAC HEM sing 763 n n 
C4C NC HEM sing 764 n y 
CMC HMC HEM sing 765 n n 
CMC HMCA HEM sing 766 n n 
CMC HMCB HEM sing 767 n n 
CAC CBC HEM doub 768 n n 
CAC HAC HEM sing 769 n n 
CBC HBC HEM sing 770 n n 
CBC HBCA HEM sing 771 n n 
C1D C2D HEM sing 772 n n 
C1D ND HEM doub 773 n n 
C2D C3D HEM doub 774 n n 
C2D CMD HEM sing 775 n n 
C3D C4D HEM sing 776 n n 
C3D CAD HEM sing 777 n n 
C4D ND HEM sing 778 n n 
CMD HMD HEM sing 779 n n 
CMD HMDA HEM sing 780 n n 
CMD HMDB HEM sing 781 n n 
CAD CBD HEM sing 782 n n 
CAD HAD HEM sing 783 n n 
CAD HADA HEM sing 784 n n 
CBD CGD HEM sing 785 n n 
CBD HBD HEM sing 786 n n 
CBD HBDA HEM sing 787 n n 
CGD O1D HEM doub 788 n n 
CGD O2D HEM sing 789 n n 
O2A H2A HEM sing 790 n n 
O2D H2D HEM sing 791 n n 
FE NA HEM sing 792 n n 
FE NB HEM sing 793 n n 
FE NC HEM sing 794 n n 
FE ND HEM sing 795 n n 
#
_atom_sites.entry_id                     8ZMT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 A1D6P C 1 401 401 A1D6P LIG . 
V 12 CN3 C 1 402 406 CN3 CN3 . 
W 13 9PE C 1 403 407 9PE 9PE . 
X 14 HEM C 1 404 807 HEM HEM . 
Y 14 HEM C 1 405 812 HEM HEM . 
Z 15 8PE C 1 406 813 8PE 8PE . 
AA 16 UQ6 C 1 407 816 UQ6 UQ6 . 
BA 14 HEM D 1 401 809 HEM HEM . 
CA 17 6PH D 1 402 810 6PH 6PH . 
DA 18 FES E 1 301 302 FES FES . 
EA 17 6PH E 1 302 401 6PH 6PH . 
FA 17 6PH L 1 501 403 6PH 6PH . 
GA 11 A1D6P N 1 401 402 A1D6P LIG . 
HA 16 UQ6 N 1 402 403 UQ6 UQ6 . 
IA 15 8PE N 1 403 404 8PE 8PE . 
JA 13 9PE N 1 404 405 9PE 9PE . 
KA 14 HEM N 1 405 808 HEM HEM . 
LA 19 CN5 N 1 406 814 CN5 CN5 . 
MA 12 CN3 N 1 407 815 CN3 CN3 . 
NA 14 HEM N 1 408 1633 HEM HEM . 
OA 14 HEM O 1 401 1215 HEM HEM . 
PA 18 FES P 1 301 301 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . X 14 149.238 165.023 184.355 1 53.33 ? CHA HEM 404 C 1 
HETATM 2 C CHB HEM . . . X 14 147.506 165.885 179.897 1 53.33 ? CHB HEM 404 C 1 
HETATM 3 C CHC HEM . . . X 14 150.815 162.901 178.014 1 53.33 ? CHC HEM 404 C 1 
HETATM 4 C CHD HEM . . . X 14 152.351 161.871 182.47 1 53.33 ? CHD HEM 404 C 1 
HETATM 5 C C1A HEM . . . X 14 148.529 165.557 183.303 1 53.33 ? C1A HEM 404 C 1 
HETATM 6 C C2A HEM . . . X 14 147.561 166.623 183.393 1 53.33 ? C2A HEM 404 C 1 
HETATM 7 C C3A HEM . . . X 14 147.084 166.863 182.174 1 53.33 ? C3A HEM 404 C 1 
HETATM 8 C C4A HEM . . . X 14 147.722 165.954 181.255 1 53.33 ? C4A HEM 404 C 1 
HETATM 9 C CMA HEM . . . X 14 146.029 167.926 181.816 1 53.33 ? CMA HEM 404 C 1 
HETATM 10 C CAA HEM . . . X 14 147.174 167.371 184.682 1 53.33 ? CAA HEM 404 C 1 
HETATM 11 C CBA HEM . . . X 14 148.206 168.478 184.848 1 53.33 ? CBA HEM 404 C 1 
HETATM 12 C CGA HEM . . . X 14 148.057 169.224 186.14 1 53.33 ? CGA HEM 404 C 1 
HETATM 13 O O1A HEM . . . X 14 147.036 169.919 186.332 1 53.33 ? O1A HEM 404 C 1 
HETATM 14 O O2A HEM . . . X 14 148.98 169.14 186.978 1 53.33 ? O2A HEM 404 C 1 
HETATM 15 C C1B HEM . . . X 14 148.263 165.18 178.987 1 53.33 ? C1B HEM 404 C 1 
HETATM 16 C C2B HEM . . . X 14 148.116 165.2 177.55 1 53.33 ? C2B HEM 404 C 1 
HETATM 17 C C3B HEM . . . X 14 149.052 164.379 177.028 1 53.33 ? C3B HEM 404 C 1 
HETATM 18 C C4B HEM . . . X 14 149.786 163.806 178.127 1 53.33 ? C4B HEM 404 C 1 
HETATM 19 C CMB HEM . . . X 14 147.054 166.078 176.848 1 53.33 ? CMB HEM 404 C 1 
HETATM 20 C CAB HEM . . . X 14 149.394 163.958 175.574 1 53.33 ? CAB HEM 404 C 1 
HETATM 21 C CBB HEM . . . X 14 148.588 164.009 174.511 1 53.33 ? CBB HEM 404 C 1 
HETATM 22 C C1C HEM . . . X 14 151.45 162.28 179.064 1 53.33 ? C1C HEM 404 C 1 
HETATM 23 C C2C HEM . . . X 14 152.306 161.112 178.996 1 53.33 ? C2C HEM 404 C 1 
HETATM 24 C C3C HEM . . . X 14 152.714 160.83 180.245 1 53.33 ? C3C HEM 404 C 1 
HETATM 25 C C4C HEM . . . X 14 152.142 161.825 181.115 1 53.33 ? C4C HEM 404 C 1 
HETATM 26 C CMC HEM . . . X 14 152.621 160.363 177.681 1 53.33 ? CMC HEM 404 C 1 
HETATM 27 C CAC HEM . . . X 14 153.641 159.726 180.831 1 53.33 ? CAC HEM 404 C 1 
HETATM 28 C CBC HEM . . . X 14 154.545 158.977 180.192 1 53.33 ? CBC HEM 404 C 1 
HETATM 29 C C1D HEM . . . X 14 151.667 162.632 183.38 1 53.33 ? C1D HEM 404 C 1 
HETATM 30 C C2D HEM . . . X 14 151.872 162.614 184.799 1 53.33 ? C2D HEM 404 C 1 
HETATM 31 C C3D HEM . . . X 14 151.039 163.479 185.372 1 53.33 ? C3D HEM 404 C 1 
HETATM 32 C C4D HEM . . . X 14 150.239 164.077 184.299 1 53.33 ? C4D HEM 404 C 1 
HETATM 33 C CMD HEM . . . X 14 152.908 161.734 185.529 1 53.33 ? CMD HEM 404 C 1 
HETATM 34 C CAD HEM . . . X 14 151.038 163.642 186.921 1 53.33 ? CAD HEM 404 C 1 
HETATM 35 C CBD HEM . . . X 14 150.596 164.966 187.528 1 53.33 ? CBD HEM 404 C 1 
HETATM 36 C CGD HEM . . . X 14 151.587 166.021 187.162 1 53.33 ? CGD HEM 404 C 1 
HETATM 37 O O1D HEM . . . X 14 151.177 167.164 186.854 1 53.33 ? O1D HEM 404 C 1 
HETATM 38 O O2D HEM . . . X 14 152.791 165.695 187.174 1 53.33 ? O2D HEM 404 C 1 
HETATM 39 N NA HEM . . . X 14 148.599 165.171 181.981 1 53.33 ? NA HEM 404 C 1 
HETATM 40 N NB HEM . . . X 14 149.288 164.319 179.304 1 53.33 ? NB HEM 404 C 1 
HETATM 41 N NC HEM . . . X 14 151.374 162.693 180.374 1 53.33 ? NC HEM 404 C 1 
HETATM 42 N ND HEM . . . X 14 150.668 163.532 183.106 1 53.33 ? ND HEM 404 C 1 
HETATM 43 FE FE HEM . . . X 14 150.045 164.013 181.187 1 53.33 ? FE HEM 404 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#