data_8ZMT # _model_server_result.job_id 00mdWCBolqdX6zzObFwX0Q _model_server_result.datetime_utc '2024-12-26 00:28:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":405}' # _entry.id 8ZMT # _exptl.entry_id 8ZMT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZMT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 X N N ? 14 Y N N ? 14 BA N N ? 14 KA N N ? 14 NA N N ? 14 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 29 F CYS 101 1_555 F SG CYS 51 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 O SG CYS 29 Q CYS 101 1_555 O SG CYS 51 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 BA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc10 M NE2 HIS 44 O HIS 105 1_555 OA FE HEM . O HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 714 n n CHA C4D HEM doub 715 n n CHA HHA HEM sing 716 n n CHB C4A HEM sing 717 n n CHB C1B HEM doub 718 n n CHB HHB HEM sing 719 n n CHC C4B HEM sing 720 n n CHC C1C HEM doub 721 n n CHC HHC HEM sing 722 n n CHD C4C HEM doub 723 n n CHD C1D HEM sing 724 n n CHD HHD HEM sing 725 n n C1A C2A HEM doub 726 n y C1A NA HEM sing 727 n y C2A C3A HEM sing 728 n y C2A CAA HEM sing 729 n n C3A C4A HEM doub 730 n y C3A CMA HEM sing 731 n n C4A NA HEM sing 732 n y CMA HMA HEM sing 733 n n CMA HMAA HEM sing 734 n n CMA HMAB HEM sing 735 n n CAA CBA HEM sing 736 n n CAA HAA HEM sing 737 n n CAA HAAA HEM sing 738 n n CBA CGA HEM sing 739 n n CBA HBA HEM sing 740 n n CBA HBAA HEM sing 741 n n CGA O1A HEM doub 742 n n CGA O2A HEM sing 743 n n C1B C2B HEM sing 744 n n C1B NB HEM sing 745 n n C2B C3B HEM doub 746 n n C2B CMB HEM sing 747 n n C3B C4B HEM sing 748 n n C3B CAB HEM sing 749 n n C4B NB HEM doub 750 n n CMB HMB HEM sing 751 n n CMB HMBA HEM sing 752 n n CMB HMBB HEM sing 753 n n CAB CBB HEM doub 754 n n CAB HAB HEM sing 755 n n CBB HBB HEM sing 756 n n CBB HBBA HEM sing 757 n n C1C C2C HEM sing 758 n y C1C NC HEM sing 759 n y C2C C3C HEM doub 760 n y C2C CMC HEM sing 761 n n C3C C4C HEM sing 762 n y C3C CAC HEM sing 763 n n C4C NC HEM sing 764 n y CMC HMC HEM sing 765 n n CMC HMCA HEM sing 766 n n CMC HMCB HEM sing 767 n n CAC CBC HEM doub 768 n n CAC HAC HEM sing 769 n n CBC HBC HEM sing 770 n n CBC HBCA HEM sing 771 n n C1D C2D HEM sing 772 n n C1D ND HEM doub 773 n n C2D C3D HEM doub 774 n n C2D CMD HEM sing 775 n n C3D C4D HEM sing 776 n n C3D CAD HEM sing 777 n n C4D ND HEM sing 778 n n CMD HMD HEM sing 779 n n CMD HMDA HEM sing 780 n n CMD HMDB HEM sing 781 n n CAD CBD HEM sing 782 n n CAD HAD HEM sing 783 n n CAD HADA HEM sing 784 n n CBD CGD HEM sing 785 n n CBD HBD HEM sing 786 n n CBD HBDA HEM sing 787 n n CGD O1D HEM doub 788 n n CGD O2D HEM sing 789 n n O2A H2A HEM sing 790 n n O2D H2D HEM sing 791 n n FE NA HEM sing 792 n n FE NB HEM sing 793 n n FE NC HEM sing 794 n n FE ND HEM sing 795 n n # _atom_sites.entry_id 8ZMT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 A1D6P C 1 401 401 A1D6P LIG . V 12 CN3 C 1 402 406 CN3 CN3 . W 13 9PE C 1 403 407 9PE 9PE . X 14 HEM C 1 404 807 HEM HEM . Y 14 HEM C 1 405 812 HEM HEM . Z 15 8PE C 1 406 813 8PE 8PE . AA 16 UQ6 C 1 407 816 UQ6 UQ6 . BA 14 HEM D 1 401 809 HEM HEM . CA 17 6PH D 1 402 810 6PH 6PH . DA 18 FES E 1 301 302 FES FES . EA 17 6PH E 1 302 401 6PH 6PH . FA 17 6PH L 1 501 403 6PH 6PH . GA 11 A1D6P N 1 401 402 A1D6P LIG . HA 16 UQ6 N 1 402 403 UQ6 UQ6 . IA 15 8PE N 1 403 404 8PE 8PE . JA 13 9PE N 1 404 405 9PE 9PE . KA 14 HEM N 1 405 808 HEM HEM . LA 19 CN5 N 1 406 814 CN5 CN5 . MA 12 CN3 N 1 407 815 CN3 CN3 . NA 14 HEM N 1 408 1633 HEM HEM . OA 14 HEM O 1 401 1215 HEM HEM . PA 18 FES P 1 301 301 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . KA 14 157.964 142.177 184.356 1 53.33 ? CHA HEM 405 N 1 HETATM 2 C CHB HEM . . . KA 14 159.694 141.313 179.897 1 53.33 ? CHB HEM 405 N 1 HETATM 3 C CHC HEM . . . KA 14 156.387 144.3 178.014 1 53.33 ? CHC HEM 405 N 1 HETATM 4 C CHD HEM . . . KA 14 154.849 145.327 182.471 1 53.33 ? CHD HEM 405 N 1 HETATM 5 C C1A HEM . . . KA 14 158.672 141.643 183.304 1 53.33 ? C1A HEM 405 N 1 HETATM 6 C C2A HEM . . . KA 14 159.639 140.576 183.394 1 53.33 ? C2A HEM 405 N 1 HETATM 7 C C3A HEM . . . KA 14 160.116 140.336 182.175 1 53.33 ? C3A HEM 405 N 1 HETATM 8 C C4A HEM . . . KA 14 159.478 141.245 181.255 1 53.33 ? C4A HEM 405 N 1 HETATM 9 C CMA HEM . . . KA 14 161.17 139.272 181.816 1 53.33 ? CMA HEM 405 N 1 HETATM 10 C CAA HEM . . . KA 14 160.026 139.828 184.683 1 53.33 ? CAA HEM 405 N 1 HETATM 11 C CBA HEM . . . KA 14 158.995 138.719 184.846 1 53.33 ? CBA HEM 405 N 1 HETATM 12 C CGA HEM . . . KA 14 159.142 137.973 186.138 1 53.33 ? CGA HEM 405 N 1 HETATM 13 O O1A HEM . . . KA 14 158.225 138.071 186.982 1 53.33 ? O1A HEM 405 N 1 HETATM 14 O O2A HEM . . . KA 14 160.162 137.278 186.333 1 53.33 ? O2A HEM 405 N 1 HETATM 15 C C1B HEM . . . KA 14 158.939 142.019 178.987 1 53.33 ? C1B HEM 405 N 1 HETATM 16 C C2B HEM . . . KA 14 159.087 142.001 177.55 1 53.33 ? C2B HEM 405 N 1 HETATM 17 C C3B HEM . . . KA 14 158.152 142.824 177.028 1 53.33 ? C3B HEM 405 N 1 HETATM 18 C C4B HEM . . . KA 14 157.416 143.394 178.128 1 53.33 ? C4B HEM 405 N 1 HETATM 19 C CMB HEM . . . KA 14 160.151 141.124 176.848 1 53.33 ? CMB HEM 405 N 1 HETATM 20 C CAB HEM . . . KA 14 157.812 143.247 175.574 1 53.33 ? CAB HEM 405 N 1 HETATM 21 C CBB HEM . . . KA 14 158.615 143.19 174.51 1 53.33 ? CBB HEM 405 N 1 HETATM 22 C C1C HEM . . . KA 14 155.751 144.92 179.064 1 53.33 ? C1C HEM 405 N 1 HETATM 23 C C2C HEM . . . KA 14 154.895 146.088 178.996 1 53.33 ? C2C HEM 405 N 1 HETATM 24 C C3C HEM . . . KA 14 154.486 146.369 180.245 1 53.33 ? C3C HEM 405 N 1 HETATM 25 C C4C HEM . . . KA 14 155.058 145.374 181.116 1 53.33 ? C4C HEM 405 N 1 HETATM 26 C CMC HEM . . . KA 14 154.581 146.837 177.681 1 53.33 ? CMC HEM 405 N 1 HETATM 27 C CAC HEM . . . KA 14 153.559 147.472 180.833 1 53.33 ? CAC HEM 405 N 1 HETATM 28 C CBC HEM . . . KA 14 152.664 148.231 180.192 1 53.33 ? CBC HEM 405 N 1 HETATM 29 C C1D HEM . . . KA 14 155.534 144.567 183.381 1 53.33 ? C1D HEM 405 N 1 HETATM 30 C C2D HEM . . . KA 14 155.329 144.586 184.8 1 53.33 ? C2D HEM 405 N 1 HETATM 31 C C3D HEM . . . KA 14 156.163 143.721 185.373 1 53.33 ? C3D HEM 405 N 1 HETATM 32 C C4D HEM . . . KA 14 156.962 143.123 184.301 1 53.33 ? C4D HEM 405 N 1 HETATM 33 C CMD HEM . . . KA 14 154.293 145.466 185.529 1 53.33 ? CMD HEM 405 N 1 HETATM 34 C CAD HEM . . . KA 14 156.164 143.559 186.922 1 53.33 ? CAD HEM 405 N 1 HETATM 35 C CBD HEM . . . KA 14 156.604 142.234 187.529 1 53.33 ? CBD HEM 405 N 1 HETATM 36 C CGD HEM . . . KA 14 155.613 141.181 187.158 1 53.33 ? CGD HEM 405 N 1 HETATM 37 O O1D HEM . . . KA 14 154.408 141.504 187.183 1 53.33 ? O1D HEM 405 N 1 HETATM 38 O O2D HEM . . . KA 14 156.022 140.036 186.854 1 53.33 ? O2D HEM 405 N 1 HETATM 39 N NA HEM . . . KA 14 158.602 142.028 181.983 1 53.33 ? NA HEM 405 N 1 HETATM 40 N NB HEM . . . KA 14 157.913 142.88 179.304 1 53.33 ? NB HEM 405 N 1 HETATM 41 N NC HEM . . . KA 14 155.827 144.507 180.375 1 53.33 ? NC HEM 405 N 1 HETATM 42 N ND HEM . . . KA 14 156.533 143.667 183.107 1 53.33 ? ND HEM 405 N 1 HETATM 43 FE FE HEM . . . KA 14 157.163 143.195 181.189 1 53.33 ? FE HEM 405 N 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 94 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #