data_8ZMT # _model_server_result.job_id -Ib6CG9v8uKuyldS_Oq3eQ _model_server_result.datetime_utc '2024-12-26 00:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":406}' # _entry.id 8ZMT # _exptl.entry_id 8ZMT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 634.631 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZMT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 19 _struct_asym.id LA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 29 F CYS 101 1_555 F SG CYS 51 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 O SG CYS 29 Q CYS 101 1_555 O SG CYS 51 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 BA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 L NE2 HIS 82 N HIS 82 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc7 L NE2 HIS 96 N HIS 96 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc8 L NE2 HIS 183 N HIS 183 1_555 KA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc9 L NE2 HIS 197 N HIS 197 1_555 NA FE HEM . N HEM 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc10 M NE2 HIS 44 O HIS 105 1_555 OA FE HEM . O HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? # _chem_comp.formula 'C26 H52 O13 P2' _chem_comp.formula_weight 634.631 _chem_comp.id CN5 _chem_comp.mon_nstd_flag . _chem_comp.name '(5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CARDIOLIPIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 P CN5 doub 559 n n O12 P CN5 sing 560 n n P O11 CN5 sing 561 n n P O13 CN5 sing 562 n n O11 C1 CN5 sing 563 n n O12 HO12 CN5 sing 564 n n O13 CC CN5 sing 565 n n C2 C1 CN5 sing 566 n n C1 H1 CN5 sing 567 n n C1 H1A CN5 sing 568 n n C2 C3 CN5 sing 569 n n C2 H2 CN5 sing 570 n n C2 H2A CN5 sing 571 n n O31 C3 CN5 sing 572 n n C3 H3 CN5 sing 573 n n C3 H3A CN5 sing 574 n n O31 C31 CN5 sing 575 n n C31 O32 CN5 doub 576 n n C32 C31 CN5 sing 577 n n C33 C32 CN5 sing 578 n n C32 H32 CN5 sing 579 n n C32 H32A CN5 sing 580 n n C33 C34 CN5 sing 581 n n C33 H33 CN5 sing 582 n n C33 H33A CN5 sing 583 n n C35 C34 CN5 sing 584 n n C34 H34 CN5 sing 585 n n C34 H34A CN5 sing 586 n n C35 C36 CN5 sing 587 n n C35 H35 CN5 sing 588 n n C35 H35A CN5 sing 589 n n C37 C36 CN5 sing 590 n n C36 H36 CN5 sing 591 n n C36 H36A CN5 sing 592 n n C37 C38 CN5 sing 593 n n C37 H37 CN5 sing 594 n n C37 H37A CN5 sing 595 n n C39 C38 CN5 sing 596 n n C38 H38 CN5 sing 597 n n C38 H38A CN5 sing 598 n n C39 C3A CN5 sing 599 n n C39 H39 CN5 sing 600 n n C39 H39A CN5 sing 601 n n C3B C3A CN5 sing 602 n n C3A H3AA CN5 sing 603 n n C3A H3AB CN5 sing 604 n n C3C C3B CN5 sing 605 n n C3B H3B CN5 sing 606 n n C3B H3BA CN5 sing 607 n n C3D C3C CN5 sing 608 n n C3C H3C CN5 sing 609 n n C3C H3CA CN5 sing 610 n n C3E C3D CN5 sing 611 n n C3D H3D CN5 sing 612 n n C3D H3DA CN5 sing 613 n n C3F C3E CN5 sing 614 n n C3E H3E CN5 sing 615 n n C3E H3EA CN5 sing 616 n n C3F H3F CN5 sing 617 n n C3F H3FA CN5 sing 618 n n C3F H3FB CN5 sing 619 n n O3' P' CN5 sing 620 n n O1' P' CN5 sing 621 n n P' O2' CN5 doub 622 n n P' O4' CN5 sing 623 n n C1' O1' CN5 sing 624 n n CA O3' CN5 sing 625 n n O4' HO4' CN5 sing 626 n n C2' C1' CN5 sing 627 n n C1' H1' CN5 sing 628 n n C1' "H1'A" CN5 sing 629 n n C2' C3' CN5 sing 630 n n C2' H2' CN5 sing 631 n n C2' "H2'A" CN5 sing 632 n n O41 C3' CN5 sing 633 n n C3' H3' CN5 sing 634 n n C3' "H3'A" CN5 sing 635 n n C41 O41 CN5 sing 636 n n O42 C41 CN5 doub 637 n n C42 C41 CN5 sing 638 n n C42 H42 CN5 sing 639 n n C42 H42A CN5 sing 640 n n C42 H42B CN5 sing 641 n n CB CA CN5 sing 642 n n CA HA CN5 sing 643 n n CA HAA CN5 sing 644 n n OA CB CN5 sing 645 n n CC CB CN5 sing 646 n n CB HB CN5 sing 647 n n OA HOA CN5 sing 648 n n CC HC CN5 sing 649 n n CC HCA CN5 sing 650 n n # _atom_sites.entry_id 8ZMT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 A1D6P C 1 401 401 A1D6P LIG . V 12 CN3 C 1 402 406 CN3 CN3 . W 13 9PE C 1 403 407 9PE 9PE . X 14 HEM C 1 404 807 HEM HEM . Y 14 HEM C 1 405 812 HEM HEM . Z 15 8PE C 1 406 813 8PE 8PE . AA 16 UQ6 C 1 407 816 UQ6 UQ6 . BA 14 HEM D 1 401 809 HEM HEM . CA 17 6PH D 1 402 810 6PH 6PH . DA 18 FES E 1 301 302 FES FES . EA 17 6PH E 1 302 401 6PH 6PH . FA 17 6PH L 1 501 403 6PH 6PH . GA 11 A1D6P N 1 401 402 A1D6P LIG . HA 16 UQ6 N 1 402 403 UQ6 UQ6 . IA 15 8PE N 1 403 404 8PE 8PE . JA 13 9PE N 1 404 405 9PE 9PE . KA 14 HEM N 1 405 808 HEM HEM . LA 19 CN5 N 1 406 814 CN5 CN5 . MA 12 CN3 N 1 407 815 CN3 CN3 . NA 14 HEM N 1 408 1633 HEM HEM . OA 14 HEM O 1 401 1215 HEM HEM . PA 18 FES P 1 301 301 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CN5 . . . LA 19 150.621 146.164 157.524 1 67.31 ? P CN5 406 N 1 HETATM 2 O O11 CN5 . . . LA 19 150.847 145.063 158.668 1 67.31 ? O11 CN5 406 N 1 HETATM 3 O O12 CN5 . . . LA 19 150.066 145.453 156.323 1 67.31 ? O12 CN5 406 N 1 HETATM 4 O O13 CN5 . . . LA 19 152.103 146.712 157.241 1 67.31 ? O13 CN5 406 N 1 HETATM 5 O O14 CN5 . . . LA 19 149.851 147.307 158.121 1 67.31 ? O14 CN5 406 N 1 HETATM 6 C C1 CN5 . . . LA 19 150.043 143.851 158.655 1 67.31 ? C1 CN5 406 N 1 HETATM 7 C C2 CN5 . . . LA 19 148.587 144.213 158.813 1 67.31 ? C2 CN5 406 N 1 HETATM 8 C C3 CN5 . . . LA 19 147.949 143.622 160.04 1 67.31 ? C3 CN5 406 N 1 HETATM 9 O O31 CN5 . . . LA 19 148.638 142.391 160.362 1 67.31 ? O31 CN5 406 N 1 HETATM 10 O O32 CN5 . . . LA 19 146.715 141.267 160.268 1 67.31 ? O32 CN5 406 N 1 HETATM 11 C C31 CN5 . . . LA 19 147.9 141.291 160.472 1 67.31 ? C31 CN5 406 N 1 HETATM 12 C C32 CN5 . . . LA 19 148.733 140.108 160.875 1 67.31 ? C32 CN5 406 N 1 HETATM 13 C C33 CN5 . . . LA 19 147.955 138.832 160.943 1 67.31 ? C33 CN5 406 N 1 HETATM 14 C C34 CN5 . . . LA 19 148.135 137.975 159.704 1 67.31 ? C34 CN5 406 N 1 HETATM 15 C C35 CN5 . . . LA 19 146.866 137.32 159.221 1 67.31 ? C35 CN5 406 N 1 HETATM 16 C C36 CN5 . . . LA 19 145.605 137.838 159.872 1 67.31 ? C36 CN5 406 N 1 HETATM 17 C C37 CN5 . . . LA 19 144.566 138.358 158.904 1 67.31 ? C37 CN5 406 N 1 HETATM 18 C C38 CN5 . . . LA 19 144.173 137.387 157.821 1 67.31 ? C38 CN5 406 N 1 HETATM 19 C C39 CN5 . . . LA 19 142.999 137.835 156.99 1 67.31 ? C39 CN5 406 N 1 HETATM 20 C C3A CN5 . . . LA 19 142.799 137.049 155.722 1 67.31 ? C3A CN5 406 N 1 HETATM 21 C C3B CN5 . . . LA 19 141.437 137.215 155.104 1 67.31 ? C3B CN5 406 N 1 HETATM 22 C C3C CN5 . . . LA 19 141.455 137.312 153.606 1 67.31 ? C3C CN5 406 N 1 HETATM 23 C C3D CN5 . . . LA 19 140.098 137.341 152.967 1 67.31 ? C3D CN5 406 N 1 HETATM 24 C C3E CN5 . . . LA 19 140.08 138.089 151.665 1 67.31 ? C3E CN5 406 N 1 HETATM 25 C C3F CN5 . . . LA 19 139.038 137.587 150.701 1 67.31 ? C3F CN5 406 N 1 HETATM 26 P P' CN5 . . . LA 19 153.394 152.423 156.732 1 67.31 ? P' CN5 406 N 1 HETATM 27 O O1' CN5 . . . LA 19 153.588 153.034 155.257 1 67.31 ? O1' CN5 406 N 1 HETATM 28 O O2' CN5 . . . LA 19 154.073 153.37 157.682 1 67.31 ? O2' CN5 406 N 1 HETATM 29 O O3' CN5 . . . LA 19 154.181 151.02 156.682 1 67.31 ? O3' CN5 406 N 1 HETATM 30 O O4' CN5 . . . LA 19 151.949 152.085 156.962 1 67.31 ? O4' CN5 406 N 1 HETATM 31 C C1' CN5 . . . LA 19 153.047 154.352 154.948 1 67.31 ? C1' CN5 406 N 1 HETATM 32 C C2' CN5 . . . LA 19 153.877 155.42 155.621 1 67.31 ? C2' CN5 406 N 1 HETATM 33 C C3' CN5 . . . LA 19 153.147 156.712 155.885 1 67.31 ? C3' CN5 406 N 1 HETATM 34 O O41 CN5 . . . LA 19 154.007 157.569 156.672 1 67.31 ? O41 CN5 406 N 1 HETATM 35 O O42 CN5 . . . LA 19 152.572 159.236 156.455 1 67.31 ? O42 CN5 406 N 1 HETATM 36 C C41 CN5 . . . LA 19 153.653 158.854 156.773 1 67.31 ? C41 CN5 406 N 1 HETATM 37 C C42 CN5 . . . LA 19 154.742 159.706 157.316 1 67.31 ? C42 CN5 406 N 1 HETATM 38 C CA CN5 . . . LA 19 153.504 149.81 156.224 1 67.31 ? CA CN5 406 N 1 HETATM 39 C CB CN5 . . . LA 19 153.711 148.587 157.087 1 67.31 ? CB CN5 406 N 1 HETATM 40 O OA CN5 . . . LA 19 154.372 147.574 156.338 1 67.31 ? OA CN5 406 N 1 HETATM 41 C CC CN5 . . . LA 19 152.427 148.054 157.679 1 67.31 ? CC CN5 406 N 1 # _model_server_stats.io_time_ms 125 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 118 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 41 #