data_8ZMX
#
_model_server_result.job_id            LD4KTPfBQ3KL5HpmQhpiAA 
_model_server_result.datetime_utc      '2024-12-01 00:33:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zmx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8ZMX 
#
_exptl.entry_id    8ZMX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZMX 
_cell.length_a            157.09 
_cell.length_b            157.09 
_cell.length_c            111.45 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZMX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G 1 1 
B,E,H 1 2 
C,F,I 1 4 
A,C,D,F,G,I 2 1,4 
B,E,H 2 2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_444 -y-1/2,x-1/2,z-1/4 0 -1 0 1 0 0 0 0 1 -78.545 -78.545 -27.8625 
3 'crystal symmetry operation' 6_445 x-1/2,-y-1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 -78.545 -78.545 27.8625 
4 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     8ZMX 
_atom_sites.fract_transf_matrix[1][1]    0.006366 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006366 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008973 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAP A 1 401 401 NAP NAP . 
E 2 NAP B 1 401 401 NAP NAP . 
F 2 NAP C 1 401 401 NAP NAP . 
G 3 HOH A 1 501 21 HOH HOH . 
G 3 HOH A 2 502 15 HOH HOH . 
G 3 HOH A 3 503 11 HOH HOH . 
G 3 HOH A 4 504 31 HOH HOH . 
G 3 HOH A 5 505 13 HOH HOH . 
G 3 HOH A 6 506 30 HOH HOH . 
G 3 HOH A 7 507 17 HOH HOH . 
G 3 HOH A 8 508 24 HOH HOH . 
H 3 HOH B 1 501 2 HOH HOH . 
H 3 HOH B 2 502 29 HOH HOH . 
H 3 HOH B 3 503 10 HOH HOH . 
H 3 HOH B 4 504 16 HOH HOH . 
H 3 HOH B 5 505 12 HOH HOH . 
H 3 HOH B 6 506 28 HOH HOH . 
H 3 HOH B 7 507 22 HOH HOH . 
I 3 HOH C 1 501 5 HOH HOH . 
I 3 HOH C 2 502 9 HOH HOH . 
I 3 HOH C 3 503 7 HOH HOH . 
I 3 HOH C 4 504 26 HOH HOH . 
I 3 HOH C 5 505 23 HOH HOH . 
I 3 HOH C 6 506 1 HOH HOH . 
I 3 HOH C 7 507 6 HOH HOH . 
I 3 HOH C 8 508 20 HOH HOH . 
I 3 HOH C 9 509 18 HOH HOH . 
I 3 HOH C 10 510 4 HOH HOH . 
I 3 HOH C 11 511 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 2 9.1 -14.476 -3.428 1 65.93 ? PA NAP 401 A 1 
HETATM 2 O O1A NAP . . . D 2 8.174 -13.381 -3.84 1 57.6 ? O1A NAP 401 A 1 
HETATM 3 O O2A NAP . . . D 2 9.907 -15.191 -4.46 1 70.37 ? O2A NAP 401 A 1 
HETATM 4 O O5B NAP . . . D 2 10.059 -13.914 -2.277 1 65.86 ? O5B NAP 401 A 1 
HETATM 5 C C5B NAP . . . D 2 11.317 -14.555 -1.965 1 62.55 ? C5B NAP 401 A 1 
HETATM 6 C C4B NAP . . . D 2 12.321 -13.485 -1.618 1 64.09 ? C4B NAP 401 A 1 
HETATM 7 O O4B NAP . . . D 2 13.485 -14.08 -1.005 1 68.83 ? O4B NAP 401 A 1 
HETATM 8 C C3B NAP . . . D 2 12.898 -12.704 -2.802 1 67.76 ? C3B NAP 401 A 1 
HETATM 9 O O3B NAP . . . D 2 12.022 -11.626 -3.108 1 62.73 ? O3B NAP 401 A 1 
HETATM 10 C C2B NAP . . . D 2 14.28 -12.262 -2.318 1 64.29 ? C2B NAP 401 A 1 
HETATM 11 O O2B NAP . . . D 2 14.053 -10.986 -1.725 1 71.07 ? O2B NAP 401 A 1 
HETATM 12 C C1B NAP . . . D 2 14.598 -13.231 -1.18 1 64.15 ? C1B NAP 401 A 1 
HETATM 13 N N9A NAP . . . D 2 15.756 -14.101 -1.363 1 71.23 ? N9A NAP 401 A 1 
HETATM 14 C C8A NAP . . . D 2 16.733 -14.351 -0.429 1 70.88 ? C8A NAP 401 A 1 
HETATM 15 N N7A NAP . . . D 2 17.616 -15.238 -0.815 1 68.05 ? N7A NAP 401 A 1 
HETATM 16 C C5A NAP . . . D 2 17.175 -15.624 -2.072 1 68.62 ? C5A NAP 401 A 1 
HETATM 17 C C6A NAP . . . D 2 17.683 -16.555 -2.997 1 74.12 ? C6A NAP 401 A 1 
HETATM 18 N N6A NAP . . . D 2 18.758 -17.308 -2.767 1 71.61 ? N6A NAP 401 A 1 
HETATM 19 N N1A NAP . . . D 2 16.995 -16.715 -4.154 1 74.4 ? N1A NAP 401 A 1 
HETATM 20 C C2A NAP . . . D 2 15.9 -15.969 -4.358 1 72.74 ? C2A NAP 401 A 1 
HETATM 21 N N3A NAP . . . D 2 15.332 -15.066 -3.562 1 66.51 ? N3A NAP 401 A 1 
HETATM 22 C C4A NAP . . . D 2 16.025 -14.938 -2.42 1 65.42 ? C4A NAP 401 A 1 
HETATM 23 O O3 NAP . . . D 2 8.293 -15.628 -2.667 1 63.62 ? O3 NAP 401 A 1 
HETATM 24 P PN NAP . . . D 2 7.095 -15.514 -1.627 1 61.16 ? PN NAP 401 A 1 
HETATM 25 O O1N NAP . . . D 2 5.803 -15.517 -2.382 1 71.13 ? O1N NAP 401 A 1 
HETATM 26 O O2N NAP . . . D 2 7.376 -14.358 -0.72 1 67.21 ? O2N NAP 401 A 1 
HETATM 27 O O5D NAP . . . D 2 7.265 -16.876 -0.811 1 63.36 ? O5D NAP 401 A 1 
HETATM 28 C C5D NAP . . . D 2 8.461 -17.034 -0.016 1 66.63 ? C5D NAP 401 A 1 
HETATM 29 C C4D NAP . . . D 2 8.299 -18.296 0.786 1 63.36 ? C4D NAP 401 A 1 
HETATM 30 O O4D NAP . . . D 2 7.034 -18.242 1.467 1 62.06 ? O4D NAP 401 A 1 
HETATM 31 C C3D NAP . . . D 2 8.233 -19.594 -0.031 1 62.78 ? C3D NAP 401 A 1 
HETATM 32 O O3D NAP . . . D 2 9.515 -20.171 -0.239 1 72.63 ? O3D NAP 401 A 1 
HETATM 33 C C2D NAP . . . D 2 7.302 -20.474 0.814 1 67.54 ? C2D NAP 401 A 1 
HETATM 34 O O2D NAP . . . D 2 7.986 -21.577 1.388 1 69.51 ? O2D NAP 401 A 1 
HETATM 35 C C1D NAP . . . D 2 6.712 -19.561 1.896 1 66.97 ? C1D NAP 401 A 1 
HETATM 36 N N1N NAP . . . D 2 5.221 -19.682 1.965 1 65.23 ? N1N NAP 401 A 1 
HETATM 37 C C2N NAP . . . D 2 4.633 -20.455 2.941 1 60.23 ? C2N NAP 401 A 1 
HETATM 38 C C3N NAP . . . D 2 3.248 -20.553 3.017 1 62.87 ? C3N NAP 401 A 1 
HETATM 39 C C7N NAP . . . D 2 2.621 -21.482 4.028 1 60.03 ? C7N NAP 401 A 1 
HETATM 40 O O7N NAP . . . D 2 1.399 -21.541 4.107 1 62.7 ? O7N NAP 401 A 1 
HETATM 41 N N7N NAP . . . D 2 3.422 -22.212 4.793 1 63.69 ? N7N NAP 401 A 1 
HETATM 42 C C4N NAP . . . D 2 2.464 -19.787 2.147 1 64.53 ? C4N NAP 401 A 1 
HETATM 43 C C5N NAP . . . D 2 3.067 -19.01 1.182 1 62.24 ? C5N NAP 401 A 1 
HETATM 44 C C6N NAP . . . D 2 4.44 -19.032 1.059 1 61 ? C6N NAP 401 A 1 
HETATM 45 P P2B NAP . . . D 2 15.314 -9.98 -1.844 1 67.43 ? P2B NAP 401 A 1 
HETATM 46 O O1X NAP . . . D 2 16.552 -10.659 -1.313 1 68.17 ? O1X NAP 401 A 1 
HETATM 47 O O2X NAP . . . D 2 15.447 -9.651 -3.331 1 66.53 ? O2X NAP 401 A 1 
HETATM 48 O O3X NAP . . . D 2 14.889 -8.792 -0.992 1 59.76 ? O3X NAP 401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#