data_8ZMX
#
_model_server_result.job_id            kj_nBqPJu6ahgrqvV-vCsw 
_model_server_result.datetime_utc      '2024-11-28 07:44:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zmx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8ZMX 
#
_exptl.entry_id    8ZMX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZMX 
_cell.length_a            157.09 
_cell.length_b            157.09 
_cell.length_c            111.45 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZMX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G 1 1 
B,E,H 1 2 
C,F,I 1 4 
A,C,D,F,G,I 2 1,4 
B,E,H 2 2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_444 -y-1/2,x-1/2,z-1/4 0 -1 0 1 0 0 0 0 1 -78.545 -78.545 -27.8625 
3 'crystal symmetry operation' 6_445 x-1/2,-y-1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 -78.545 -78.545 27.8625 
4 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     8ZMX 
_atom_sites.fract_transf_matrix[1][1]    0.006366 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006366 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008973 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAP A 1 401 401 NAP NAP . 
E 2 NAP B 1 401 401 NAP NAP . 
F 2 NAP C 1 401 401 NAP NAP . 
G 3 HOH A 1 501 21 HOH HOH . 
G 3 HOH A 2 502 15 HOH HOH . 
G 3 HOH A 3 503 11 HOH HOH . 
G 3 HOH A 4 504 31 HOH HOH . 
G 3 HOH A 5 505 13 HOH HOH . 
G 3 HOH A 6 506 30 HOH HOH . 
G 3 HOH A 7 507 17 HOH HOH . 
G 3 HOH A 8 508 24 HOH HOH . 
H 3 HOH B 1 501 2 HOH HOH . 
H 3 HOH B 2 502 29 HOH HOH . 
H 3 HOH B 3 503 10 HOH HOH . 
H 3 HOH B 4 504 16 HOH HOH . 
H 3 HOH B 5 505 12 HOH HOH . 
H 3 HOH B 6 506 28 HOH HOH . 
H 3 HOH B 7 507 22 HOH HOH . 
I 3 HOH C 1 501 5 HOH HOH . 
I 3 HOH C 2 502 9 HOH HOH . 
I 3 HOH C 3 503 7 HOH HOH . 
I 3 HOH C 4 504 26 HOH HOH . 
I 3 HOH C 5 505 23 HOH HOH . 
I 3 HOH C 6 506 1 HOH HOH . 
I 3 HOH C 7 507 6 HOH HOH . 
I 3 HOH C 8 508 20 HOH HOH . 
I 3 HOH C 9 509 18 HOH HOH . 
I 3 HOH C 10 510 4 HOH HOH . 
I 3 HOH C 11 511 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . F 2 -26.669 -34.643 34.093 1 68.96 ? PA NAP 401 C 1 
HETATM 2 O O1A NAP . . . F 2 -27.137 -35.675 33.113 1 62.5 ? O1A NAP 401 C 1 
HETATM 3 O O2A NAP . . . F 2 -27.668 -33.937 34.952 1 72.66 ? O2A NAP 401 C 1 
HETATM 4 O O5B NAP . . . F 2 -25.55 -35.304 35.024 1 68.68 ? O5B NAP 401 C 1 
HETATM 5 C C5B NAP . . . F 2 -25.107 -34.688 36.261 1 70.26 ? C5B NAP 401 C 1 
HETATM 6 C C4B NAP . . . F 2 -24.718 -35.807 37.195 1 72.5 ? C4B NAP 401 C 1 
HETATM 7 O O4B NAP . . . F 2 -24.042 -35.3 38.371 1 74.09 ? O4B NAP 401 C 1 
HETATM 8 C C3B NAP . . . F 2 -25.881 -36.654 37.717 1 72.9 ? C3B NAP 401 C 1 
HETATM 9 O O3B NAP . . . F 2 -26.098 -37.729 36.813 1 72.02 ? O3B NAP 401 C 1 
HETATM 10 C C2B NAP . . . F 2 -25.382 -37.131 39.071 1 73.11 ? C2B NAP 401 C 1 
HETATM 11 O O2B NAP . . . F 2 -24.581 -38.265 38.764 1 69.35 ? O2B NAP 401 C 1 
HETATM 12 C C1B NAP . . . F 2 -24.515 -35.957 39.524 1 72.73 ? C1B NAP 401 C 1 
HETATM 13 N N9A NAP . . . F 2 -25.166 -34.948 40.352 1 75.46 ? N9A NAP 401 C 1 
HETATM 14 C C8A NAP . . . F 2 -26.403 -34.37 40.179 1 75.57 ? C8A NAP 401 C 1 
HETATM 15 N N7A NAP . . . F 2 -26.683 -33.461 41.084 1 74.94 ? N7A NAP 401 C 1 
HETATM 16 C C5A NAP . . . F 2 -25.555 -33.428 41.899 1 77.45 ? C5A NAP 401 C 1 
HETATM 17 C C6A NAP . . . F 2 -25.22 -32.667 43.042 1 77.8 ? C6A NAP 401 C 1 
HETATM 18 N N6A NAP . . . F 2 -26.011 -31.744 43.581 1 78.9 ? N6A NAP 401 C 1 
HETATM 19 N N1A NAP . . . F 2 -24.007 -32.886 43.608 1 79.7 ? N1A NAP 401 C 1 
HETATM 20 C C2A NAP . . . F 2 -23.202 -33.808 43.064 1 75.12 ? C2A NAP 401 C 1 
HETATM 21 N N3A NAP . . . F 2 -23.408 -34.579 41.998 1 79.43 ? N3A NAP 401 C 1 
HETATM 22 C C4A NAP . . . F 2 -24.614 -34.339 41.453 1 75.64 ? C4A NAP 401 C 1 
HETATM 23 O O3 NAP . . . F 2 -25.851 -33.532 33.266 1 70.53 ? O3 NAP 401 C 1 
HETATM 24 P PN NAP . . . F 2 -24.993 -33.629 31.91 1 66.82 ? PN NAP 401 C 1 
HETATM 25 O O1N NAP . . . F 2 -25.772 -33.031 30.781 1 65.41 ? O1N NAP 401 C 1 
HETATM 26 O O2N NAP . . . F 2 -24.456 -35.01 31.745 1 59.83 ? O2N NAP 401 C 1 
HETATM 27 O O5D NAP . . . F 2 -23.771 -32.681 32.292 1 67.48 ? O5D NAP 401 C 1 
HETATM 28 C C5D NAP . . . F 2 -23.991 -31.27 32.359 1 68.72 ? C5D NAP 401 C 1 
HETATM 29 C C4D NAP . . . F 2 -22.732 -30.642 32.888 1 69.03 ? C4D NAP 401 C 1 
HETATM 30 O O4D NAP . . . F 2 -21.686 -30.808 31.905 1 63.79 ? O4D NAP 401 C 1 
HETATM 31 C C3D NAP . . . F 2 -22.849 -29.153 33.229 1 72.69 ? C3D NAP 401 C 1 
HETATM 32 O O3D NAP . . . F 2 -22.321 -28.923 34.528 1 78.71 ? O3D NAP 401 C 1 
HETATM 33 C C2D NAP . . . F 2 -21.982 -28.477 32.167 1 69.5 ? C2D NAP 401 C 1 
HETATM 34 O O2D NAP . . . F 2 -21.153 -27.504 32.78 1 68.26 ? O2D NAP 401 C 1 
HETATM 35 C C1D NAP . . . F 2 -21.158 -29.564 31.492 1 61.02 ? C1D NAP 401 C 1 
HETATM 36 N N1N NAP . . . F 2 -21.301 -29.487 30.015 1 64.2 ? N1N NAP 401 C 1 
HETATM 37 C C2N NAP . . . F 2 -20.486 -28.662 29.282 1 65.88 ? C2N NAP 401 C 1 
HETATM 38 C C3N NAP . . . F 2 -20.608 -28.603 27.896 1 62.92 ? C3N NAP 401 C 1 
HETATM 39 C C7N NAP . . . F 2 -19.617 -27.788 27.107 1 65.08 ? C7N NAP 401 C 1 
HETATM 40 O O7N NAP . . . F 2 -19.699 -27.782 25.879 1 65.7 ? O7N NAP 401 C 1 
HETATM 41 N N7N NAP . . . F 2 -18.695 -27.109 27.783 1 61.57 ? N7N NAP 401 C 1 
HETATM 42 C C4N NAP . . . F 2 -21.636 -29.303 27.275 1 66.5 ? C4N NAP 401 C 1 
HETATM 43 C C5N NAP . . . F 2 -22.447 -30.129 28.025 1 61.91 ? C5N NAP 401 C 1 
HETATM 44 C C6N NAP . . . F 2 -22.244 -30.226 29.385 1 65.39 ? C6N NAP 401 C 1 
HETATM 45 P P2B NAP . . . F 2 -24.683 -39.378 39.935 1 76.24 ? P2B NAP 401 C 1 
HETATM 46 O O1X NAP . . . F 2 -26.09 -39.946 39.854 1 82.46 ? O1X NAP 401 C 1 
HETATM 47 O O2X NAP . . . F 2 -23.623 -40.429 39.654 1 76.63 ? O2X NAP 401 C 1 
HETATM 48 O O3X NAP . . . F 2 -24.44 -38.67 41.26 1 80.39 ? O3X NAP 401 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#