data_8ZN0 # _model_server_result.job_id hlhaeeNyY5n6XymZMKxH_Q _model_server_result.datetime_utc '2025-07-25 13:20:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zn0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8ZN0 # _exptl.entry_id 8ZN0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZN0 _cell.length_a 66.346 _cell.length_b 66.346 _cell.length_c 167.429 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZN0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 319 n n N HN1 SAM sing 320 n n N HN2 SAM sing 321 n n CA C SAM sing 322 n n CA CB SAM sing 323 n n CA HA SAM sing 324 n n C O SAM doub 325 n n C OXT SAM sing 326 n n CB CG SAM sing 327 n n CB HB1 SAM sing 328 n n CB HB2 SAM sing 329 n n CG SD SAM sing 330 n n CG HG1 SAM sing 331 n n CG HG2 SAM sing 332 n n SD CE SAM sing 333 n n SD C5' SAM sing 334 n n CE HE1 SAM sing 335 n n CE HE2 SAM sing 336 n n CE HE3 SAM sing 337 n n C5' C4' SAM sing 338 n n C5' "H5'1" SAM sing 339 n n C5' "H5'2" SAM sing 340 n n C4' O4' SAM sing 341 n n C4' C3' SAM sing 342 n n C4' H4' SAM sing 343 n n O4' C1' SAM sing 344 n n C3' O3' SAM sing 345 n n C3' C2' SAM sing 346 n n C3' H3' SAM sing 347 n n O3' HO3' SAM sing 348 n n C2' O2' SAM sing 349 n n C2' C1' SAM sing 350 n n C2' H2' SAM sing 351 n n O2' HO2' SAM sing 352 n n C1' N9 SAM sing 353 n n C1' H1' SAM sing 354 n n N9 C8 SAM sing 355 n y N9 C4 SAM sing 356 n y C8 N7 SAM doub 357 n y C8 H8 SAM sing 358 n n N7 C5 SAM sing 359 n y C5 C6 SAM sing 360 n y C5 C4 SAM doub 361 n y C6 N6 SAM sing 362 n n C6 N1 SAM doub 363 n y N6 HN61 SAM sing 364 n n N6 HN62 SAM sing 365 n n N1 C2 SAM sing 366 n y C2 N3 SAM doub 367 n y C2 H2 SAM sing 368 n n N3 C4 SAM sing 369 n y # _atom_sites.entry_id 8ZN0 _atom_sites.fract_transf_matrix[1][1] 0.015072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 401 302 SAM SAM . D 3 A1D8J A 1 402 1 A1D8J CCR . E 2 SAM B 1 401 303 SAM SAM . F 3 A1D8J B 1 402 2 A1D8J CCR . G 4 HOH A 1 501 64 HOH HOH . G 4 HOH A 2 502 50 HOH HOH . G 4 HOH A 3 503 56 HOH HOH . G 4 HOH A 4 504 95 HOH HOH . G 4 HOH A 5 505 54 HOH HOH . G 4 HOH A 6 506 13 HOH HOH . G 4 HOH A 7 507 17 HOH HOH . G 4 HOH A 8 508 75 HOH HOH . G 4 HOH A 9 509 34 HOH HOH . G 4 HOH A 10 510 52 HOH HOH . G 4 HOH A 11 511 37 HOH HOH . G 4 HOH A 12 512 86 HOH HOH . G 4 HOH A 13 513 77 HOH HOH . G 4 HOH A 14 514 23 HOH HOH . G 4 HOH A 15 515 7 HOH HOH . G 4 HOH A 16 516 111 HOH HOH . G 4 HOH A 17 517 115 HOH HOH . G 4 HOH A 18 518 116 HOH HOH . G 4 HOH A 19 519 16 HOH HOH . G 4 HOH A 20 520 10 HOH HOH . G 4 HOH A 21 521 79 HOH HOH . G 4 HOH A 22 522 133 HOH HOH . G 4 HOH A 23 523 145 HOH HOH . G 4 HOH A 24 524 81 HOH HOH . G 4 HOH A 25 525 82 HOH HOH . G 4 HOH A 26 526 21 HOH HOH . G 4 HOH A 27 527 113 HOH HOH . G 4 HOH A 28 528 108 HOH HOH . G 4 HOH A 29 529 58 HOH HOH . G 4 HOH A 30 530 15 HOH HOH . G 4 HOH A 31 531 6 HOH HOH . G 4 HOH A 32 532 42 HOH HOH . G 4 HOH A 33 533 32 HOH HOH . G 4 HOH A 34 534 126 HOH HOH . G 4 HOH A 35 535 1 HOH HOH . G 4 HOH A 36 536 61 HOH HOH . G 4 HOH A 37 537 25 HOH HOH . G 4 HOH A 38 538 55 HOH HOH . G 4 HOH A 39 539 96 HOH HOH . G 4 HOH A 40 540 120 HOH HOH . G 4 HOH A 41 541 46 HOH HOH . G 4 HOH A 42 542 88 HOH HOH . G 4 HOH A 43 543 57 HOH HOH . G 4 HOH A 44 544 132 HOH HOH . G 4 HOH A 45 545 74 HOH HOH . G 4 HOH A 46 546 28 HOH HOH . G 4 HOH A 47 547 38 HOH HOH . G 4 HOH A 48 548 121 HOH HOH . G 4 HOH A 49 549 44 HOH HOH . G 4 HOH A 50 550 114 HOH HOH . G 4 HOH A 51 551 62 HOH HOH . G 4 HOH A 52 552 97 HOH HOH . G 4 HOH A 53 553 112 HOH HOH . G 4 HOH A 54 554 106 HOH HOH . G 4 HOH A 55 555 103 HOH HOH . G 4 HOH A 56 556 131 HOH HOH . G 4 HOH A 57 557 47 HOH HOH . G 4 HOH A 58 558 137 HOH HOH . G 4 HOH A 59 559 94 HOH HOH . G 4 HOH A 60 560 70 HOH HOH . G 4 HOH A 61 561 123 HOH HOH . G 4 HOH A 62 562 117 HOH HOH . G 4 HOH A 63 563 33 HOH HOH . G 4 HOH A 64 564 125 HOH HOH . G 4 HOH A 65 565 84 HOH HOH . G 4 HOH A 66 566 105 HOH HOH . G 4 HOH A 67 567 69 HOH HOH . G 4 HOH A 68 568 130 HOH HOH . G 4 HOH A 69 569 76 HOH HOH . H 4 HOH B 1 501 8 HOH HOH . H 4 HOH B 2 502 24 HOH HOH . H 4 HOH B 3 503 40 HOH HOH . H 4 HOH B 4 504 59 HOH HOH . H 4 HOH B 5 505 87 HOH HOH . H 4 HOH B 6 506 2 HOH HOH . H 4 HOH B 7 507 9 HOH HOH . H 4 HOH B 8 508 30 HOH HOH . H 4 HOH B 9 509 129 HOH HOH . H 4 HOH B 10 510 51 HOH HOH . H 4 HOH B 11 511 27 HOH HOH . H 4 HOH B 12 512 73 HOH HOH . H 4 HOH B 13 513 101 HOH HOH . H 4 HOH B 14 514 71 HOH HOH . H 4 HOH B 15 515 41 HOH HOH . H 4 HOH B 16 516 18 HOH HOH . H 4 HOH B 17 517 83 HOH HOH . H 4 HOH B 18 518 45 HOH HOH . H 4 HOH B 19 519 39 HOH HOH . H 4 HOH B 20 520 43 HOH HOH . H 4 HOH B 21 521 98 HOH HOH . H 4 HOH B 22 522 5 HOH HOH . H 4 HOH B 23 523 90 HOH HOH . H 4 HOH B 24 524 100 HOH HOH . H 4 HOH B 25 525 67 HOH HOH . H 4 HOH B 26 526 48 HOH HOH . H 4 HOH B 27 527 99 HOH HOH . H 4 HOH B 28 528 63 HOH HOH . H 4 HOH B 29 529 60 HOH HOH . H 4 HOH B 30 530 20 HOH HOH . H 4 HOH B 31 531 92 HOH HOH . H 4 HOH B 32 532 136 HOH HOH . H 4 HOH B 33 533 72 HOH HOH . H 4 HOH B 34 534 110 HOH HOH . H 4 HOH B 35 535 3 HOH HOH . H 4 HOH B 36 536 36 HOH HOH . H 4 HOH B 37 537 91 HOH HOH . H 4 HOH B 38 538 109 HOH HOH . H 4 HOH B 39 539 85 HOH HOH . H 4 HOH B 40 540 11 HOH HOH . H 4 HOH B 41 541 127 HOH HOH . H 4 HOH B 42 542 135 HOH HOH . H 4 HOH B 43 543 144 HOH HOH . H 4 HOH B 44 544 89 HOH HOH . H 4 HOH B 45 545 29 HOH HOH . H 4 HOH B 46 546 143 HOH HOH . H 4 HOH B 47 547 140 HOH HOH . H 4 HOH B 48 548 128 HOH HOH . H 4 HOH B 49 549 4 HOH HOH . H 4 HOH B 50 550 119 HOH HOH . H 4 HOH B 51 551 53 HOH HOH . H 4 HOH B 52 552 19 HOH HOH . H 4 HOH B 53 553 26 HOH HOH . H 4 HOH B 54 554 49 HOH HOH . H 4 HOH B 55 555 107 HOH HOH . H 4 HOH B 56 556 122 HOH HOH . H 4 HOH B 57 557 141 HOH HOH . H 4 HOH B 58 558 68 HOH HOH . H 4 HOH B 59 559 14 HOH HOH . H 4 HOH B 60 560 93 HOH HOH . H 4 HOH B 61 561 104 HOH HOH . H 4 HOH B 62 562 118 HOH HOH . H 4 HOH B 63 563 124 HOH HOH . H 4 HOH B 64 564 138 HOH HOH . H 4 HOH B 65 565 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . E 2 6.996 47.673 7.85 1 27.32 ? N SAM 401 B 1 HETATM 2 C CA SAM . . . E 2 5.731 47.749 7.146 1 25.95 ? CA SAM 401 B 1 HETATM 3 C C SAM . . . E 2 4.661 47.062 7.938 1 30.18 ? C SAM 401 B 1 HETATM 4 O O SAM . . . E 2 4.981 46.216 8.801 1 31.58 ? O SAM 401 B 1 HETATM 5 O OXT SAM . . . E 2 3.478 47.371 7.693 1 30.81 ? OXT SAM 401 B 1 HETATM 6 C CB SAM . . . E 2 5.84 47.061 5.791 1 25.79 ? CB SAM 401 B 1 HETATM 7 C CG SAM . . . E 2 6.583 45.739 5.928 1 22.36 ? CG SAM 401 B 1 HETATM 8 S SD SAM . . . E 2 6.601 44.941 4.475 1 27.84 ? SD SAM 401 B 1 HETATM 9 C CE SAM . . . E 2 6.08 43.382 4.704 1 35.47 ? CE SAM 401 B 1 HETATM 10 C C5' SAM . . . E 2 8.153 44.933 3.887 1 29.53 ? C5' SAM 401 B 1 HETATM 11 C C4' SAM . . . E 2 8.439 46.257 3.199 1 30.96 ? C4' SAM 401 B 1 HETATM 12 O O4' SAM . . . E 2 9.843 46.412 2.99 1 29.56 ? O4' SAM 401 B 1 HETATM 13 C C3' SAM . . . E 2 7.775 46.342 1.835 1 29.92 ? C3' SAM 401 B 1 HETATM 14 O O3' SAM . . . E 2 6.869 47.444 1.8 1 29.85 ? O3' SAM 401 B 1 HETATM 15 C C2' SAM . . . E 2 8.908 46.531 0.853 1 25 ? C2' SAM 401 B 1 HETATM 16 O O2' SAM . . . E 2 8.602 47.489 -0.157 1 30.52 ? O2' SAM 401 B 1 HETATM 17 C C1' SAM . . . E 2 10.042 47.031 1.719 1 25.72 ? C1' SAM 401 B 1 HETATM 18 N N9 SAM . . . E 2 11.357 46.68 1.142 1 30.62 ? N9 SAM 401 B 1 HETATM 19 C C8 SAM . . . E 2 11.731 45.487 0.652 1 30.49 ? C8 SAM 401 B 1 HETATM 20 N N7 SAM . . . E 2 13.014 45.531 0.208 1 34.17 ? N7 SAM 401 B 1 HETATM 21 C C5 SAM . . . E 2 13.471 46.78 0.415 1 32.89 ? C5 SAM 401 B 1 HETATM 22 C C6 SAM . . . E 2 14.738 47.512 0.184 1 31.69 ? C6 SAM 401 B 1 HETATM 23 N N6 SAM . . . E 2 15.805 46.899 -0.38 1 27.38 ? N6 SAM 401 B 1 HETATM 24 N N1 SAM . . . E 2 14.79 48.811 0.553 1 26.75 ? N1 SAM 401 B 1 HETATM 25 C C2 SAM . . . E 2 13.738 49.435 1.113 1 29.84 ? C2 SAM 401 B 1 HETATM 26 N N3 SAM . . . E 2 12.56 48.835 1.353 1 26.56 ? N3 SAM 401 B 1 HETATM 27 C C4 SAM . . . E 2 12.371 47.533 1.031 1 33.26 ? C4 SAM 401 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #