data_8ZNO # _model_server_result.job_id 0c1ggSALeTErYc6_UGyerg _model_server_result.datetime_utc '2025-07-03 17:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":401}' # _entry.id 8ZNO # _exptl.entry_id 8ZNO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZNO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 17 _struct_asym.id RA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 145 E CYS 216 1_555 E SG CYS 161 E CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 H SG CYS 12 H CYS 38 1_555 H SG CYS 54 H CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 H SG CYS 16 H CYS 42 1_555 H SG CYS 50 H CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 H SG CYS 26 H CYS 52 1_555 H SG CYS 40 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 O SG CYS 145 Q CYS 216 1_555 O SG CYS 161 Q CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 R SG CYS 12 T CYS 38 1_555 R SG CYS 54 T CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 R SG CYS 16 T CYS 42 1_555 R SG CYS 50 T CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 R SG CYS 26 T CYS 52 1_555 R SG CYS 40 T CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 B NE2 HIS 97 B HIS 140 1_555 U ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc2 C NE2 HIS 86 C HIS 86 1_555 Y FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 C NE2 HIS 100 C HIS 100 1_555 Z FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc4 C NE2 HIS 187 C HIS 187 1_555 Y FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc5 C NE2 HIS 201 C HIS 201 1_555 Z FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc6 D NE2 HIS 42 D HIS 107 1_555 GA FE HEC . D HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc7 E SG CYS 140 E CYS 211 1_555 HA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 E SG CYS 159 E CYS 230 1_555 HA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc9 L NE2 HIS 97 N HIS 140 1_555 KA ZN ZN . N ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 L NE2 HIS 101 N HIS 144 1_555 KA ZN ZN . N ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 L OE1 GLU 177 N GLU 220 1_555 KA ZN ZN . N ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc12 M NE2 HIS 86 O HIS 86 1_555 OA FE HEM . O HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc13 M NE2 HIS 100 O HIS 100 1_555 PA FE HEM . O HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc14 M NE2 HIS 187 O HIS 187 1_555 OA FE HEM . O HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc15 M NE2 HIS 201 O HIS 201 1_555 PA FE HEM . O HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc16 N NE2 HIS 42 P HIS 107 1_555 TA FE HEC . P HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc17 O SG CYS 140 Q CYS 211 1_555 VA FE1 FES . Q FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc18 O SG CYS 159 Q CYS 230 1_555 VA FE1 FES . Q FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc19 O SG CYS 159 Q CYS 230 1_555 VA FE2 FES . Q FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 792 n n P O14 PC1 doub 793 n n P O13 PC1 sing 794 n n P O11 PC1 sing 795 n n O13 C11 PC1 sing 796 n n C11 C12 PC1 sing 797 n n C11 H111 PC1 sing 798 n n C11 H112 PC1 sing 799 n n C12 N PC1 sing 800 n n C12 H121 PC1 sing 801 n n C12 H122 PC1 sing 802 n n N C13 PC1 sing 803 n n N C14 PC1 sing 804 n n N C15 PC1 sing 805 n n C13 H131 PC1 sing 806 n n C13 H132 PC1 sing 807 n n C13 H133 PC1 sing 808 n n C14 H141 PC1 sing 809 n n C14 H142 PC1 sing 810 n n C14 H143 PC1 sing 811 n n C15 H151 PC1 sing 812 n n C15 H152 PC1 sing 813 n n C15 H153 PC1 sing 814 n n O11 C1 PC1 sing 815 n n C1 C2 PC1 sing 816 n n C1 H11 PC1 sing 817 n n C1 H12 PC1 sing 818 n n C2 O21 PC1 sing 819 n n C2 C3 PC1 sing 820 n n C2 H2 PC1 sing 821 n n O21 C21 PC1 sing 822 n n C21 O22 PC1 doub 823 n n C21 C22 PC1 sing 824 n n C22 C23 PC1 sing 825 n n C22 H221 PC1 sing 826 n n C22 H222 PC1 sing 827 n n C23 C24 PC1 sing 828 n n C23 H231 PC1 sing 829 n n C23 H232 PC1 sing 830 n n C24 C25 PC1 sing 831 n n C24 H241 PC1 sing 832 n n C24 H242 PC1 sing 833 n n C25 C26 PC1 sing 834 n n C25 H251 PC1 sing 835 n n C25 H252 PC1 sing 836 n n C26 C27 PC1 sing 837 n n C26 H261 PC1 sing 838 n n C26 H262 PC1 sing 839 n n C27 C28 PC1 sing 840 n n C27 H271 PC1 sing 841 n n C27 H272 PC1 sing 842 n n C28 C29 PC1 sing 843 n n C28 H281 PC1 sing 844 n n C28 H282 PC1 sing 845 n n C29 C2A PC1 sing 846 n n C29 H291 PC1 sing 847 n n C29 H292 PC1 sing 848 n n C2A C2B PC1 sing 849 n n C2A H2A1 PC1 sing 850 n n C2A H2A2 PC1 sing 851 n n C2B C2C PC1 sing 852 n n C2B H2B1 PC1 sing 853 n n C2B H2B2 PC1 sing 854 n n C2C C2D PC1 sing 855 n n C2C H2C1 PC1 sing 856 n n C2C H2C2 PC1 sing 857 n n C2D C2E PC1 sing 858 n n C2D H2D1 PC1 sing 859 n n C2D H2D2 PC1 sing 860 n n C2E C2F PC1 sing 861 n n C2E H2E1 PC1 sing 862 n n C2E H2E2 PC1 sing 863 n n C2F C2G PC1 sing 864 n n C2F H2F1 PC1 sing 865 n n C2F H2F2 PC1 sing 866 n n C2G C2H PC1 sing 867 n n C2G H2G1 PC1 sing 868 n n C2G H2G2 PC1 sing 869 n n C2H C2I PC1 sing 870 n n C2H H2H1 PC1 sing 871 n n C2H H2H2 PC1 sing 872 n n C2I H2I1 PC1 sing 873 n n C2I H2I2 PC1 sing 874 n n C2I H2I3 PC1 sing 875 n n C3 O31 PC1 sing 876 n n C3 H31 PC1 sing 877 n n C3 H32 PC1 sing 878 n n O31 C31 PC1 sing 879 n n C31 O32 PC1 doub 880 n n C31 C32 PC1 sing 881 n n C32 C33 PC1 sing 882 n n C32 H321 PC1 sing 883 n n C32 H322 PC1 sing 884 n n C33 C34 PC1 sing 885 n n C33 H331 PC1 sing 886 n n C33 H332 PC1 sing 887 n n C34 C35 PC1 sing 888 n n C34 H341 PC1 sing 889 n n C34 H342 PC1 sing 890 n n C35 C36 PC1 sing 891 n n C35 H351 PC1 sing 892 n n C35 H352 PC1 sing 893 n n C36 C37 PC1 sing 894 n n C36 H361 PC1 sing 895 n n C36 H362 PC1 sing 896 n n C37 C38 PC1 sing 897 n n C37 H371 PC1 sing 898 n n C37 H372 PC1 sing 899 n n C38 C39 PC1 sing 900 n n C38 H381 PC1 sing 901 n n C38 H382 PC1 sing 902 n n C39 C3A PC1 sing 903 n n C39 H391 PC1 sing 904 n n C39 H392 PC1 sing 905 n n C3A C3B PC1 sing 906 n n C3A H3A1 PC1 sing 907 n n C3A H3A2 PC1 sing 908 n n C3B C3C PC1 sing 909 n n C3B H3B1 PC1 sing 910 n n C3B H3B2 PC1 sing 911 n n C3C C3D PC1 sing 912 n n C3C H3C1 PC1 sing 913 n n C3C H3C2 PC1 sing 914 n n C3D C3E PC1 sing 915 n n C3D H3D1 PC1 sing 916 n n C3D H3D2 PC1 sing 917 n n C3E C3F PC1 sing 918 n n C3E H3E1 PC1 sing 919 n n C3E H3E2 PC1 sing 920 n n C3F C3G PC1 sing 921 n n C3F H3F1 PC1 sing 922 n n C3F H3F2 PC1 sing 923 n n C3G C3H PC1 sing 924 n n C3G H3G1 PC1 sing 925 n n C3G H3G2 PC1 sing 926 n n C3H C3I PC1 sing 927 n n C3H H3H1 PC1 sing 928 n n C3H H3H2 PC1 sing 929 n n C3I H3I1 PC1 sing 930 n n C3I H3I2 PC1 sing 931 n n C3I H3I3 PC1 sing 932 n n # _atom_sites.entry_id 8ZNO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 ZN B 1 601 601 ZN ZN . V 12 CDL B 1 602 603 CDL CDL . W 13 3PE C 1 401 103 3PE 3PE . X 13 3PE C 1 402 202 3PE 3PE . Y 14 HEM C 1 403 402 HEM HEM . Z 14 HEM C 1 404 403 HEM HEM . AA 13 3PE C 1 405 406 3PE 3PE . BA 13 3PE C 1 406 407 3PE 3PE . CA 13 3PE C 1 407 409 3PE 3PE . DA 12 CDL C 1 408 410 CDL CDL . EA 13 3PE C 1 409 411 3PE 3PE . FA 12 CDL D 1 401 401 CDL CDL . GA 15 HEC D 1 402 501 HEC HEC . HA 16 FES E 1 301 31 FES FES . IA 13 3PE E 1 302 415 3PE 3PE . JA 13 3PE G 1 201 201 3PE 3PE . KA 11 ZN N 1 601 604 ZN ZN . LA 12 CDL N 1 602 606 CDL CDL . MA 13 3PE O 1 401 404 3PE 3PE . NA 12 CDL O 1 402 412 CDL CDL . OA 14 HEM O 1 403 413 HEM HEM . PA 14 HEM O 1 404 414 HEM HEM . QA 12 CDL O 1 405 416 CDL CDL . RA 17 PC1 P 1 401 101 PC1 PC1 . SA 13 3PE P 1 402 417 3PE 3PE . TA 15 HEC P 1 403 503 HEC HEC . UA 12 CDL P 1 404 504 CDL CDL . VA 16 FES Q 1 301 32 FES FES . WA 13 3PE R 1 201 419 3PE 3PE . XA 13 3PE S 1 101 418 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . RA 17 145.299 173.235 128.264 1 90.68 ? O12 PC1 401 P 1 HETATM 2 P P PC1 . . . RA 17 146.01 173.657 127.023 1 90.68 ? P PC1 401 P 1 HETATM 3 O O14 PC1 . . . RA 17 145.446 174.681 126.079 1 90.68 ? O14 PC1 401 P 1 HETATM 4 O O13 PC1 . . . RA 17 147.412 174.204 127.533 1 90.68 ? O13 PC1 401 P 1 HETATM 5 C C11 PC1 . . . RA 17 147.429 175.431 128.279 1 90.68 ? C11 PC1 401 P 1 HETATM 6 C C12 PC1 . . . RA 17 146.772 175.132 129.596 1 90.68 ? C12 PC1 401 P 1 HETATM 7 N N PC1 . . . RA 17 147.305 175.93 130.757 1 90.68 ? N PC1 401 P 1 HETATM 8 C C13 PC1 . . . RA 17 146.854 177.318 130.601 1 90.68 ? C13 PC1 401 P 1 HETATM 9 C C14 PC1 . . . RA 17 146.817 175.421 132.053 1 90.68 ? C14 PC1 401 P 1 HETATM 10 C C15 PC1 . . . RA 17 148.773 175.867 130.757 1 90.68 ? C15 PC1 401 P 1 HETATM 11 O O11 PC1 . . . RA 17 146.318 172.28 126.294 1 90.68 ? O11 PC1 401 P 1 HETATM 12 C C1 PC1 . . . RA 17 145.182 171.604 125.723 1 90.68 ? C1 PC1 401 P 1 HETATM 13 C C2 PC1 . . . RA 17 144.328 172.533 124.892 1 90.68 ? C2 PC1 401 P 1 HETATM 14 O O21 PC1 . . . RA 17 143.116 171.813 124.579 1 90.68 ? O21 PC1 401 P 1 HETATM 15 C C21 PC1 . . . RA 17 142.271 172.359 123.703 1 90.68 ? C21 PC1 401 P 1 HETATM 16 O O22 PC1 . . . RA 17 142.369 173.48 123.285 1 90.68 ? O22 PC1 401 P 1 HETATM 17 C C22 PC1 . . . RA 17 141.2 171.377 123.377 1 90.68 ? C22 PC1 401 P 1 HETATM 18 C C23 PC1 . . . RA 17 141.239 170.908 121.983 1 90.68 ? C23 PC1 401 P 1 HETATM 19 C C24 PC1 . . . RA 17 139.897 170.976 121.319 1 90.68 ? C24 PC1 401 P 1 HETATM 20 C C25 PC1 . . . RA 17 139.843 171.909 120.149 1 90.68 ? C25 PC1 401 P 1 HETATM 21 C C26 PC1 . . . RA 17 139.577 171.194 118.853 1 90.68 ? C26 PC1 401 P 1 HETATM 22 C C27 PC1 . . . RA 17 138.282 171.531 118.172 1 90.68 ? C27 PC1 401 P 1 HETATM 23 C C28 PC1 . . . RA 17 138.087 170.798 116.877 1 90.68 ? C28 PC1 401 P 1 HETATM 24 C C29 PC1 . . . RA 17 136.709 170.915 116.307 1 90.68 ? C29 PC1 401 P 1 HETATM 25 C C2A PC1 . . . RA 17 135.928 169.641 116.282 1 90.68 ? C2A PC1 401 P 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #