data_8ZNO # _model_server_result.job_id ulRVeQF9_FvbZ3xh06d5lw _model_server_result.datetime_utc '2025-07-05 16:48:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":404}' # _entry.id 8ZNO # _exptl.entry_id 8ZNO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZNO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 Z N N ? 14 OA N N ? 14 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 145 E CYS 216 1_555 E SG CYS 161 E CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 H SG CYS 12 H CYS 38 1_555 H SG CYS 54 H CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 H SG CYS 16 H CYS 42 1_555 H SG CYS 50 H CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 H SG CYS 26 H CYS 52 1_555 H SG CYS 40 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 O SG CYS 145 Q CYS 216 1_555 O SG CYS 161 Q CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 R SG CYS 12 T CYS 38 1_555 R SG CYS 54 T CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 R SG CYS 16 T CYS 42 1_555 R SG CYS 50 T CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 R SG CYS 26 T CYS 52 1_555 R SG CYS 40 T CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 B NE2 HIS 97 B HIS 140 1_555 U ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc2 C NE2 HIS 86 C HIS 86 1_555 Y FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 C NE2 HIS 100 C HIS 100 1_555 Z FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc4 C NE2 HIS 187 C HIS 187 1_555 Y FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc5 C NE2 HIS 201 C HIS 201 1_555 Z FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc6 D NE2 HIS 42 D HIS 107 1_555 GA FE HEC . D HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc7 E SG CYS 140 E CYS 211 1_555 HA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 E SG CYS 159 E CYS 230 1_555 HA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc9 L NE2 HIS 97 N HIS 140 1_555 KA ZN ZN . N ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 L NE2 HIS 101 N HIS 144 1_555 KA ZN ZN . N ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 L OE1 GLU 177 N GLU 220 1_555 KA ZN ZN . N ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc12 M NE2 HIS 86 O HIS 86 1_555 OA FE HEM . O HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc13 M NE2 HIS 100 O HIS 100 1_555 PA FE HEM . O HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc14 M NE2 HIS 187 O HIS 187 1_555 OA FE HEM . O HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc15 M NE2 HIS 201 O HIS 201 1_555 PA FE HEM . O HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc16 N NE2 HIS 42 P HIS 107 1_555 TA FE HEC . P HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc17 O SG CYS 140 Q CYS 211 1_555 VA FE1 FES . Q FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc18 O SG CYS 159 Q CYS 230 1_555 VA FE1 FES . Q FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc19 O SG CYS 159 Q CYS 230 1_555 VA FE2 FES . Q FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 604 n n CHA C4D HEM doub 605 n n CHA HHA HEM sing 606 n n CHB C4A HEM sing 607 n n CHB C1B HEM doub 608 n n CHB HHB HEM sing 609 n n CHC C4B HEM sing 610 n n CHC C1C HEM doub 611 n n CHC HHC HEM sing 612 n n CHD C4C HEM doub 613 n n CHD C1D HEM sing 614 n n CHD HHD HEM sing 615 n n C1A C2A HEM doub 616 n y C1A NA HEM sing 617 n y C2A C3A HEM sing 618 n y C2A CAA HEM sing 619 n n C3A C4A HEM doub 620 n y C3A CMA HEM sing 621 n n C4A NA HEM sing 622 n y CMA HMA HEM sing 623 n n CMA HMAA HEM sing 624 n n CMA HMAB HEM sing 625 n n CAA CBA HEM sing 626 n n CAA HAA HEM sing 627 n n CAA HAAA HEM sing 628 n n CBA CGA HEM sing 629 n n CBA HBA HEM sing 630 n n CBA HBAA HEM sing 631 n n CGA O1A HEM doub 632 n n CGA O2A HEM sing 633 n n C1B C2B HEM sing 634 n n C1B NB HEM sing 635 n n C2B C3B HEM doub 636 n n C2B CMB HEM sing 637 n n C3B C4B HEM sing 638 n n C3B CAB HEM sing 639 n n C4B NB HEM doub 640 n n CMB HMB HEM sing 641 n n CMB HMBA HEM sing 642 n n CMB HMBB HEM sing 643 n n CAB CBB HEM doub 644 n n CAB HAB HEM sing 645 n n CBB HBB HEM sing 646 n n CBB HBBA HEM sing 647 n n C1C C2C HEM sing 648 n y C1C NC HEM sing 649 n y C2C C3C HEM doub 650 n y C2C CMC HEM sing 651 n n C3C C4C HEM sing 652 n y C3C CAC HEM sing 653 n n C4C NC HEM sing 654 n y CMC HMC HEM sing 655 n n CMC HMCA HEM sing 656 n n CMC HMCB HEM sing 657 n n CAC CBC HEM doub 658 n n CAC HAC HEM sing 659 n n CBC HBC HEM sing 660 n n CBC HBCA HEM sing 661 n n C1D C2D HEM sing 662 n n C1D ND HEM doub 663 n n C2D C3D HEM doub 664 n n C2D CMD HEM sing 665 n n C3D C4D HEM sing 666 n n C3D CAD HEM sing 667 n n C4D ND HEM sing 668 n n CMD HMD HEM sing 669 n n CMD HMDA HEM sing 670 n n CMD HMDB HEM sing 671 n n CAD CBD HEM sing 672 n n CAD HAD HEM sing 673 n n CAD HADA HEM sing 674 n n CBD CGD HEM sing 675 n n CBD HBD HEM sing 676 n n CBD HBDA HEM sing 677 n n CGD O1D HEM doub 678 n n CGD O2D HEM sing 679 n n O2A H2A HEM sing 680 n n O2D H2D HEM sing 681 n n FE NA HEM sing 682 n n FE NB HEM sing 683 n n FE NC HEM sing 684 n n FE ND HEM sing 685 n n # _atom_sites.entry_id 8ZNO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 ZN B 1 601 601 ZN ZN . V 12 CDL B 1 602 603 CDL CDL . W 13 3PE C 1 401 103 3PE 3PE . X 13 3PE C 1 402 202 3PE 3PE . Y 14 HEM C 1 403 402 HEM HEM . Z 14 HEM C 1 404 403 HEM HEM . AA 13 3PE C 1 405 406 3PE 3PE . BA 13 3PE C 1 406 407 3PE 3PE . CA 13 3PE C 1 407 409 3PE 3PE . DA 12 CDL C 1 408 410 CDL CDL . EA 13 3PE C 1 409 411 3PE 3PE . FA 12 CDL D 1 401 401 CDL CDL . GA 15 HEC D 1 402 501 HEC HEC . HA 16 FES E 1 301 31 FES FES . IA 13 3PE E 1 302 415 3PE 3PE . JA 13 3PE G 1 201 201 3PE 3PE . KA 11 ZN N 1 601 604 ZN ZN . LA 12 CDL N 1 602 606 CDL CDL . MA 13 3PE O 1 401 404 3PE 3PE . NA 12 CDL O 1 402 412 CDL CDL . OA 14 HEM O 1 403 413 HEM HEM . PA 14 HEM O 1 404 414 HEM HEM . QA 12 CDL O 1 405 416 CDL CDL . RA 17 PC1 P 1 401 101 PC1 PC1 . SA 13 3PE P 1 402 417 3PE 3PE . TA 15 HEC P 1 403 503 HEC HEC . UA 12 CDL P 1 404 504 CDL CDL . VA 16 FES Q 1 301 32 FES FES . WA 13 3PE R 1 201 419 3PE 3PE . XA 13 3PE S 1 101 418 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . Z 14 118.87 125.543 129.929 1 61.36 ? CHA HEM 404 C 1 HETATM 2 C CHB HEM . . . Z 14 121.692 124.989 126.053 1 61.36 ? CHB HEM 404 C 1 HETATM 3 C CHC HEM . . . Z 14 118.401 127.259 123.327 1 61.36 ? CHC HEM 404 C 1 HETATM 4 C CHD HEM . . . Z 14 115.7 128.051 127.256 1 61.36 ? CHD HEM 404 C 1 HETATM 5 C C1A HEM . . . Z 14 119.89 125.127 129.103 1 61.36 ? C1A HEM 404 C 1 HETATM 6 C C2A HEM . . . Z 14 120.972 124.224 129.453 1 61.36 ? C2A HEM 404 C 1 HETATM 7 C C3A HEM . . . Z 14 121.751 124.085 128.377 1 61.36 ? C3A HEM 404 C 1 HETATM 8 C C4A HEM . . . Z 14 121.182 124.879 127.319 1 61.36 ? C4A HEM 404 C 1 HETATM 9 C CMA HEM . . . Z 14 123.032 123.239 128.222 1 61.36 ? CMA HEM 404 C 1 HETATM 10 C CAA HEM . . . Z 14 121.183 123.572 130.837 1 61.36 ? CAA HEM 404 C 1 HETATM 11 C CBA HEM . . . Z 14 121.121 122.056 130.74 1 61.36 ? CBA HEM 404 C 1 HETATM 12 C CGA HEM . . . Z 14 119.685 121.654 130.64 1 61.36 ? CGA HEM 404 C 1 HETATM 13 O O1A HEM . . . Z 14 118.881 122.167 131.452 1 61.36 ? O1A HEM 404 C 1 HETATM 14 O O2A HEM . . . Z 14 119.351 120.82 129.765 1 61.36 ? O2A HEM 404 C 1 HETATM 15 C C1B HEM . . . Z 14 121.064 125.602 125 1 61.36 ? C1B HEM 404 C 1 HETATM 16 C C2B HEM . . . Z 14 121.653 125.8 123.707 1 61.36 ? C2B HEM 404 C 1 HETATM 17 C C3B HEM . . . Z 14 120.751 126.423 122.934 1 61.36 ? C3B HEM 404 C 1 HETATM 18 C C4B HEM . . . Z 14 119.562 126.642 123.737 1 61.36 ? C4B HEM 404 C 1 HETATM 19 C CMB HEM . . . Z 14 123.082 125.324 123.383 1 61.36 ? CMB HEM 404 C 1 HETATM 20 C CAB HEM . . . Z 14 120.874 126.882 121.46 1 61.36 ? CAB HEM 404 C 1 HETATM 21 C CBB HEM . . . Z 14 122.01 126.874 120.757 1 61.36 ? CBB HEM 404 C 1 HETATM 22 C C1C HEM . . . Z 14 117.375 127.681 124.143 1 61.36 ? C1C HEM 404 C 1 HETATM 23 C C2C HEM . . . Z 14 116.19 128.409 123.74 1 61.36 ? C2C HEM 404 C 1 HETATM 24 C C3C HEM . . . Z 14 115.438 128.625 124.831 1 61.36 ? C3C HEM 404 C 1 HETATM 25 C C4C HEM . . . Z 14 116.136 128.043 125.954 1 61.36 ? C4C HEM 404 C 1 HETATM 26 C CMC HEM . . . Z 14 115.903 128.824 122.283 1 61.36 ? CMC HEM 404 C 1 HETATM 27 C CAC HEM . . . Z 14 114.08 129.351 124.996 1 61.36 ? CAC HEM 404 C 1 HETATM 28 C CBC HEM . . . Z 14 113.432 130.003 124.028 1 61.36 ? CBC HEM 404 C 1 HETATM 29 C C1D HEM . . . Z 14 116.309 127.426 128.317 1 61.36 ? C1D HEM 404 C 1 HETATM 30 C C2D HEM . . . Z 14 115.793 127.366 129.658 1 61.36 ? C2D HEM 404 C 1 HETATM 31 C C3D HEM . . . Z 14 116.645 126.676 130.415 1 61.36 ? C3D HEM 404 C 1 HETATM 32 C C4D HEM . . . Z 14 117.758 126.272 129.571 1 61.36 ? C4D HEM 404 C 1 HETATM 33 C CMD HEM . . . Z 14 114.465 127.993 130.122 1 61.36 ? CMD HEM 404 C 1 HETATM 34 C CAD HEM . . . Z 14 116.422 126.412 131.922 1 61.36 ? CAD HEM 404 C 1 HETATM 35 C CBD HEM . . . Z 14 116.766 124.986 132.322 1 61.36 ? CBD HEM 404 C 1 HETATM 36 C CGD HEM . . . Z 14 116.018 124.597 133.56 1 61.36 ? CGD HEM 404 C 1 HETATM 37 O O1D HEM . . . Z 14 114.879 125.074 133.74 1 61.36 ? O1D HEM 404 C 1 HETATM 38 O O2D HEM . . . Z 14 116.552 123.791 134.354 1 61.36 ? O2D HEM 404 C 1 HETATM 39 N NA HEM . . . Z 14 120.048 125.503 127.788 1 61.36 ? NA HEM 404 C 1 HETATM 40 N NB HEM . . . Z 14 119.788 126.124 124.992 1 61.36 ? NB HEM 404 C 1 HETATM 41 N NC HEM . . . Z 14 117.308 127.477 125.501 1 61.36 ? NC HEM 404 C 1 HETATM 42 N ND HEM . . . Z 14 117.512 126.75 128.298 1 61.36 ? ND HEM 404 C 1 HETATM 43 FE FE HEM . . . Z 14 118.712 126.535 126.65 1 61.36 ? FE HEM 404 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #