data_8ZO0
#
_model_server_result.job_id            Ybu14mEHift1B-dwl6w5PQ 
_model_server_result.datetime_utc      '2025-06-30 03:31:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zo0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    8ZO0 
#
_exptl.entry_id    8ZO0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZO0 
_cell.length_a            32.278 
_cell.length_b            63.682 
_cell.length_c            81.595 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZO0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 20 A THR 19 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc2 A O PRO 37 A PRO 36 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 D O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     8ZO0 
_atom_sites.fract_transf_matrix[1][1]    0.030981 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015703 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012256 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 201 201 GNP GNP . 
C 3 MG A 1 202 1 MG MG . 
D 4 HOH A 1 301 46 HOH HOH . 
D 4 HOH A 2 302 34 HOH HOH . 
D 4 HOH A 3 303 170 HOH HOH . 
D 4 HOH A 4 304 204 HOH HOH . 
D 4 HOH A 5 305 274 HOH HOH . 
D 4 HOH A 6 306 74 HOH HOH . 
D 4 HOH A 7 307 15 HOH HOH . 
D 4 HOH A 8 308 73 HOH HOH . 
D 4 HOH A 9 309 224 HOH HOH . 
D 4 HOH A 10 310 92 HOH HOH . 
D 4 HOH A 11 311 78 HOH HOH . 
D 4 HOH A 12 312 225 HOH HOH . 
D 4 HOH A 13 313 1 HOH HOH . 
D 4 HOH A 14 314 26 HOH HOH . 
D 4 HOH A 15 315 30 HOH HOH . 
D 4 HOH A 16 316 20 HOH HOH . 
D 4 HOH A 17 317 18 HOH HOH . 
D 4 HOH A 18 318 53 HOH HOH . 
D 4 HOH A 19 319 13 HOH HOH . 
D 4 HOH A 20 320 2 HOH HOH . 
D 4 HOH A 21 321 128 HOH HOH . 
D 4 HOH A 22 322 189 HOH HOH . 
D 4 HOH A 23 323 342 HOH HOH . 
D 4 HOH A 24 324 9 HOH HOH . 
D 4 HOH A 25 325 113 HOH HOH . 
D 4 HOH A 26 326 155 HOH HOH . 
D 4 HOH A 27 327 214 HOH HOH . 
D 4 HOH A 28 328 38 HOH HOH . 
D 4 HOH A 29 329 6 HOH HOH . 
D 4 HOH A 30 330 28 HOH HOH . 
D 4 HOH A 31 331 187 HOH HOH . 
D 4 HOH A 32 332 144 HOH HOH . 
D 4 HOH A 33 333 60 HOH HOH . 
D 4 HOH A 34 334 27 HOH HOH . 
D 4 HOH A 35 335 4 HOH HOH . 
D 4 HOH A 36 336 265 HOH HOH . 
D 4 HOH A 37 337 24 HOH HOH . 
D 4 HOH A 38 338 349 HOH HOH . 
D 4 HOH A 39 339 3 HOH HOH . 
D 4 HOH A 40 340 115 HOH HOH . 
D 4 HOH A 41 341 167 HOH HOH . 
D 4 HOH A 42 342 5 HOH HOH . 
D 4 HOH A 43 343 29 HOH HOH . 
D 4 HOH A 44 344 14 HOH HOH . 
D 4 HOH A 45 345 8 HOH HOH . 
D 4 HOH A 46 346 334 HOH HOH . 
D 4 HOH A 47 347 44 HOH HOH . 
D 4 HOH A 48 348 19 HOH HOH . 
D 4 HOH A 49 349 22 HOH HOH . 
D 4 HOH A 50 350 57 HOH HOH . 
D 4 HOH A 51 351 12 HOH HOH . 
D 4 HOH A 52 352 76 HOH HOH . 
D 4 HOH A 53 353 43 HOH HOH . 
D 4 HOH A 54 354 103 HOH HOH . 
D 4 HOH A 55 355 21 HOH HOH . 
D 4 HOH A 56 356 143 HOH HOH . 
D 4 HOH A 57 357 221 HOH HOH . 
D 4 HOH A 58 358 80 HOH HOH . 
D 4 HOH A 59 359 341 HOH HOH . 
D 4 HOH A 60 360 129 HOH HOH . 
D 4 HOH A 61 361 16 HOH HOH . 
D 4 HOH A 62 362 10 HOH HOH . 
D 4 HOH A 63 363 340 HOH HOH . 
D 4 HOH A 64 364 104 HOH HOH . 
D 4 HOH A 65 365 54 HOH HOH . 
D 4 HOH A 66 366 55 HOH HOH . 
D 4 HOH A 67 367 145 HOH HOH . 
D 4 HOH A 68 368 63 HOH HOH . 
D 4 HOH A 69 369 106 HOH HOH . 
D 4 HOH A 70 370 240 HOH HOH . 
D 4 HOH A 71 371 139 HOH HOH . 
D 4 HOH A 72 372 84 HOH HOH . 
D 4 HOH A 73 373 248 HOH HOH . 
D 4 HOH A 74 374 111 HOH HOH . 
D 4 HOH A 75 375 180 HOH HOH . 
D 4 HOH A 76 376 383 HOH HOH . 
D 4 HOH A 77 377 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . B 2 -1.55 0.22 12.431 1 26.93 ? PG GNP 201 A 1 
HETATM 2 O O1G GNP . . . B 2 -0.507 0.548 13.425 1 23.8 ? O1G GNP 201 A 1 
HETATM 3 O O2G GNP . . . B 2 -0.942 0.288 11.077 1 24.99 -1 O2G GNP 201 A 1 
HETATM 4 O O3G GNP . . . B 2 -2.634 1.237 12.509 1 26.09 -1 O3G GNP 201 A 1 
HETATM 5 N N3B GNP . . . B 2 -2.089 -1.288 12.707 1 22.37 ? N3B GNP 201 A 1 
HETATM 6 P PB GNP . . . B 2 -3.195 -2.104 11.845 1 23.68 ? PB GNP 201 A 1 
HETATM 7 O O1B GNP . . . B 2 -4.596 -1.769 12.255 1 22.49 ? O1B GNP 201 A 1 
HETATM 8 O O2B GNP . . . B 2 -2.851 -2.074 10.39 1 21.7 -1 O2B GNP 201 A 1 
HETATM 9 O O3A GNP . . . B 2 -2.973 -3.617 12.311 1 19.15 ? O3A GNP 201 A 1 
HETATM 10 P PA GNP . . . B 2 -2.18 -4.838 11.647 1 22.69 ? PA GNP 201 A 1 
HETATM 11 O O1A GNP . . . B 2 -0.736 -4.489 11.613 1 23.9 ? O1A GNP 201 A 1 
HETATM 12 O O2A GNP . . . B 2 -2.834 -5.213 10.366 1 24.16 -1 O2A GNP 201 A 1 
HETATM 13 O O5' GNP . . . B 2 -2.419 -6.001 12.715 1 22.18 ? O5' GNP 201 A 1 
HETATM 14 C C5' GNP . . . B 2 -2.033 -5.805 14.092 1 20.44 ? C5' GNP 201 A 1 
HETATM 15 C C4' GNP . . . B 2 -1.778 -7.139 14.752 1 26.17 ? C4' GNP 201 A 1 
HETATM 16 O O4' GNP . . . B 2 -3.007 -7.907 14.778 1 23.53 ? O4' GNP 201 A 1 
HETATM 17 C C3' GNP . . . B 2 -0.74 -8.05 14.082 1 24.96 ? C3' GNP 201 A 1 
HETATM 18 O O3' GNP . . . B 2 -0.009 -8.766 15.065 1 28.39 ? O3' GNP 201 A 1 
HETATM 19 C C2' GNP . . . B 2 -1.605 -8.983 13.231 1 23.07 ? C2' GNP 201 A 1 
HETATM 20 O O2' GNP . . . B 2 -1.012 -10.236 12.992 1 28.41 ? O2' GNP 201 A 1 
HETATM 21 C C1' GNP . . . B 2 -2.833 -9.135 14.116 1 23.24 ? C1' GNP 201 A 1 
HETATM 22 N N9 GNP . . . B 2 -4.054 -9.434 13.383 1 25.97 ? N9 GNP 201 A 1 
HETATM 23 C C8 GNP . . . B 2 -4.522 -8.802 12.262 1 22.73 ? C8 GNP 201 A 1 
HETATM 24 N N7 GNP . . . B 2 -5.655 -9.293 11.828 1 22.27 ? N7 GNP 201 A 1 
HETATM 25 C C5 GNP . . . B 2 -5.95 -10.311 12.72 1 24.42 ? C5 GNP 201 A 1 
HETATM 26 C C6 GNP . . . B 2 -7.053 -11.197 12.76 1 22.22 ? C6 GNP 201 A 1 
HETATM 27 O O6 GNP . . . B 2 -8.017 -11.26 11.99 1 24.15 ? O6 GNP 201 A 1 
HETATM 28 N N1 GNP . . . B 2 -6.961 -12.067 13.843 1 22.74 ? N1 GNP 201 A 1 
HETATM 29 C C2 GNP . . . B 2 -5.943 -12.092 14.76 1 23.98 ? C2 GNP 201 A 1 
HETATM 30 N N2 GNP . . . B 2 -6.029 -13.013 15.726 1 25.81 ? N2 GNP 201 A 1 
HETATM 31 N N3 GNP . . . B 2 -4.903 -11.265 14.727 1 21.96 ? N3 GNP 201 A 1 
HETATM 32 C C4 GNP . . . B 2 -4.973 -10.407 13.685 1 24.74 ? C4 GNP 201 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#