data_8ZOS # _model_server_result.job_id fkAzAJvUIVgC8AQfn7mKFw _model_server_result.datetime_utc '2024-12-26 12:04:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":402}' # _entry.id 8ZOS # _exptl.entry_id 8ZOS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZOS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 X N N ? 13 Y N N ? 13 DA N N ? 13 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 82 A HIS 83 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc2 A NE2 HIS 96 A HIS 97 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc3 A NE2 HIS 181 A HIS 182 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc4 A NE2 HIS 195 A HIS 196 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 L NE2 HIS 82 a HIS 83 1_555 DA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc6 L NE2 HIS 96 a HIS 97 1_555 EA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc7 L NE2 HIS 181 a HIS 182 1_555 DA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc8 L NE2 HIS 195 a HIS 196 1_555 EA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 519 n n CHA C4D HEM doub 520 n n CHA HHA HEM sing 521 n n CHB C4A HEM sing 522 n n CHB C1B HEM doub 523 n n CHB HHB HEM sing 524 n n CHC C4B HEM sing 525 n n CHC C1C HEM doub 526 n n CHC HHC HEM sing 527 n n CHD C4C HEM doub 528 n n CHD C1D HEM sing 529 n n CHD HHD HEM sing 530 n n C1A C2A HEM doub 531 n y C1A NA HEM sing 532 n y C2A C3A HEM sing 533 n y C2A CAA HEM sing 534 n n C3A C4A HEM doub 535 n y C3A CMA HEM sing 536 n n C4A NA HEM sing 537 n y CMA HMA HEM sing 538 n n CMA HMAA HEM sing 539 n n CMA HMAB HEM sing 540 n n CAA CBA HEM sing 541 n n CAA HAA HEM sing 542 n n CAA HAAA HEM sing 543 n n CBA CGA HEM sing 544 n n CBA HBA HEM sing 545 n n CBA HBAA HEM sing 546 n n CGA O1A HEM doub 547 n n CGA O2A HEM sing 548 n n C1B C2B HEM sing 549 n n C1B NB HEM sing 550 n n C2B C3B HEM doub 551 n n C2B CMB HEM sing 552 n n C3B C4B HEM sing 553 n n C3B CAB HEM sing 554 n n C4B NB HEM doub 555 n n CMB HMB HEM sing 556 n n CMB HMBA HEM sing 557 n n CMB HMBB HEM sing 558 n n CAB CBB HEM doub 559 n n CAB HAB HEM sing 560 n n CBB HBB HEM sing 561 n n CBB HBBA HEM sing 562 n n C1C C2C HEM sing 563 n y C1C NC HEM sing 564 n y C2C C3C HEM doub 565 n y C2C CMC HEM sing 566 n n C3C C4C HEM sing 567 n y C3C CAC HEM sing 568 n n C4C NC HEM sing 569 n y CMC HMC HEM sing 570 n n CMC HMCA HEM sing 571 n n CMC HMCB HEM sing 572 n n CAC CBC HEM doub 573 n n CAC HAC HEM sing 574 n n CBC HBC HEM sing 575 n n CBC HBCA HEM sing 576 n n C1D C2D HEM sing 577 n n C1D ND HEM doub 578 n n C2D C3D HEM doub 579 n n C2D CMD HEM sing 580 n n C3D C4D HEM sing 581 n n C3D CAD HEM sing 582 n n C4D ND HEM sing 583 n n CMD HMD HEM sing 584 n n CMD HMDA HEM sing 585 n n CMD HMDB HEM sing 586 n n CAD CBD HEM sing 587 n n CAD HAD HEM sing 588 n n CAD HADA HEM sing 589 n n CBD CGD HEM sing 590 n n CBD HBD HEM sing 591 n n CBD HBDA HEM sing 592 n n CGD O1D HEM doub 593 n n CGD O2D HEM sing 594 n n O2A H2A HEM sing 595 n n O2D H2D HEM sing 596 n n FE NA HEM sing 597 n n FE NB HEM sing 598 n n FE NC HEM sing 599 n n FE ND HEM sing 600 n n # _atom_sites.entry_id 8ZOS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 A1D6K A 1 401 401 A1D6K LIG . X 13 HEM A 1 402 404 HEM HEM . Y 13 HEM A 1 403 405 HEM HEM . Z 14 PEE A 1 404 497 PEE PEE . AA 15 HEC B 1 401 406 HEC HEC . BA 14 PEE D 1 501 503 PEE PEE . CA 12 A1D6K a 1 401 401 A1D6K LIG . DA 13 HEM a 1 402 401 HEM HEM . EA 13 HEM a 1 403 402 HEM HEM . FA 16 FES a 1 404 302 FES FES . GA 14 PEE a 1 405 498 PEE PEE . HA 17 CDL a 1 406 501 CDL CDL . IA 17 CDL a 1 407 504 CDL CDL . JA 15 HEC b 1 401 403 HEC HEC . KA 16 FES c 1 301 303 FES FES . LA 17 CDL g 1 201 499 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . DA 13 141.999 143.811 187.149 1 31.32 ? CHA HEM 402 a 1 HETATM 2 C CHB HEM . . . DA 13 141.556 141.548 182.873 1 31.32 ? CHB HEM 402 a 1 HETATM 3 C CHC HEM . . . DA 13 143.681 145.424 180.948 1 31.32 ? CHC HEM 402 a 1 HETATM 4 C CHD HEM . . . DA 13 145.664 146.325 185.28 1 31.32 ? CHD HEM 402 a 1 HETATM 5 C C1A HEM . . . DA 13 141.665 142.859 186.205 1 31.32 ? C1A HEM 402 a 1 HETATM 6 C C2A HEM . . . DA 13 141 141.587 186.42 1 31.32 ? C2A HEM 402 a 1 HETATM 7 C C3A HEM . . . DA 13 140.882 140.971 185.239 1 31.32 ? C3A HEM 402 a 1 HETATM 8 C C4A HEM . . . DA 13 141.469 141.814 184.224 1 31.32 ? C4A HEM 402 a 1 HETATM 9 C CMA HEM . . . DA 13 140.231 139.596 184.999 1 31.32 ? CMA HEM 402 a 1 HETATM 10 C CAA HEM . . . DA 13 140.493 141.024 187.766 1 31.32 ? CAA HEM 402 a 1 HETATM 11 C CBA HEM . . . DA 13 139.321 141.84 188.303 1 31.32 ? CBA HEM 402 a 1 HETATM 12 C CGA HEM . . . DA 13 138.731 141.155 189.503 1 31.32 ? CGA HEM 402 a 1 HETATM 13 O O1A HEM . . . DA 13 138.053 141.842 190.302 1 31.32 ? O1A HEM 402 a 1 HETATM 14 O O2A HEM . . . DA 13 138.947 139.929 189.66 1 31.32 ? O2A HEM 402 a 1 HETATM 15 C C1B HEM . . . DA 13 142.073 142.412 181.93 1 31.32 ? C1B HEM 402 a 1 HETATM 16 C C2B HEM . . . DA 13 142.113 142.23 180.493 1 31.32 ? C2B HEM 402 a 1 HETATM 17 C C3B HEM . . . DA 13 142.691 143.326 179.954 1 31.32 ? C3B HEM 402 a 1 HETATM 18 C C4B HEM . . . DA 13 143.051 144.205 181.045 1 31.32 ? C4B HEM 402 a 1 HETATM 19 C CMB HEM . . . DA 13 141.523 140.977 179.805 1 31.32 ? CMB HEM 402 a 1 HETATM 20 C CAB HEM . . . DA 13 143.03 143.713 178.485 1 31.32 ? CAB HEM 402 a 1 HETATM 21 C CBB HEM . . . DA 13 143.284 142.869 177.48 1 31.32 ? CBB HEM 402 a 1 HETATM 22 C C1C HEM . . . DA 13 144.431 146.012 181.953 1 31.32 ? C1C HEM 402 a 1 HETATM 23 C C2C HEM . . . DA 13 145.27 147.185 181.823 1 31.32 ? C2C HEM 402 a 1 HETATM 24 C C3C HEM . . . DA 13 145.836 147.428 183.026 1 31.32 ? C3C HEM 402 a 1 HETATM 25 C C4C HEM . . . DA 13 145.348 146.42 183.943 1 31.32 ? C4C HEM 402 a 1 HETATM 26 C CMC HEM . . . DA 13 145.436 147.927 180.477 1 31.32 ? CMC HEM 402 a 1 HETATM 27 C CAC HEM . . . DA 13 146.811 148.539 183.519 1 31.32 ? CAC HEM 402 a 1 HETATM 28 C CBC HEM . . . DA 13 147.024 149.737 182.958 1 31.32 ? CBC HEM 402 a 1 HETATM 29 C C1D HEM . . . DA 13 144.826 145.763 186.224 1 31.32 ? C1D HEM 402 a 1 HETATM 30 C C2D HEM . . . DA 13 144.91 145.843 187.668 1 31.32 ? C2D HEM 402 a 1 HETATM 31 C C3D HEM . . . DA 13 143.895 145.151 188.192 1 31.32 ? C3D HEM 402 a 1 HETATM 32 C C4D HEM . . . DA 13 143.124 144.597 187.096 1 31.32 ? C4D HEM 402 a 1 HETATM 33 C CMD HEM . . . DA 13 145.978 146.603 188.48 1 31.32 ? CMD HEM 402 a 1 HETATM 34 C CAD HEM . . . DA 13 143.623 144.977 189.707 1 31.32 ? CAD HEM 402 a 1 HETATM 35 C CBD HEM . . . DA 13 142.475 145.874 190.151 1 31.32 ? CBD HEM 402 a 1 HETATM 36 C CGD HEM . . . DA 13 141.274 145.025 190.459 1 31.32 ? CGD HEM 402 a 1 HETATM 37 O O1D HEM . . . DA 13 140.146 145.571 190.462 1 31.32 ? O1D HEM 402 a 1 HETATM 38 O O2D HEM . . . DA 13 141.445 143.803 190.686 1 31.32 ? O2D HEM 402 a 1 HETATM 39 N NA HEM . . . DA 13 141.934 142.955 184.853 1 31.32 ? NA HEM 402 a 1 HETATM 40 N NB HEM . . . DA 13 142.656 143.621 182.222 1 31.32 ? NB HEM 402 a 1 HETATM 41 N NC HEM . . . DA 13 144.501 145.579 183.263 1 31.32 ? NC HEM 402 a 1 HETATM 42 N ND HEM . . . DA 13 143.724 144.994 185.923 1 31.32 ? ND HEM 402 a 1 HETATM 43 FE FE HEM . . . DA 13 143.168 144.33 184.079 1 31.32 ? FE HEM 402 a 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #