data_8ZOS # _model_server_result.job_id O8qzmHLckyYzG7lPH_sBfQ _model_server_result.datetime_utc '2024-12-26 11:47:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":405}' # _entry.id 8ZOS # _exptl.entry_id 8ZOS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZOS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Z N N ? 14 BA N N ? 14 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 82 A HIS 83 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc2 A NE2 HIS 96 A HIS 97 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc3 A NE2 HIS 181 A HIS 182 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc4 A NE2 HIS 195 A HIS 196 1_555 X FE HEM . A HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 L NE2 HIS 82 a HIS 83 1_555 DA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc6 L NE2 HIS 96 a HIS 97 1_555 EA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc7 L NE2 HIS 181 a HIS 182 1_555 DA FE HEM . a HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc8 L NE2 HIS 195 a HIS 196 1_555 EA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 707 n n C5 C4 PEE sing 708 n n C4 O4P PEE sing 709 n n O4P P PEE sing 710 n n O1P P PEE doub 711 n n C1 O3P PEE sing 712 n n C1 C2 PEE sing 713 n n O3P P PEE sing 714 n n P O2P PEE sing 715 n n C2 C3 PEE sing 716 n n C2 O2 PEE sing 717 n n C3 O3 PEE sing 718 n n O2 C10 PEE sing 719 n n C31 C30 PEE sing 720 n n C31 C32 PEE sing 721 n n C33 C32 PEE sing 722 n n C33 C34 PEE sing 723 n n C30 O3 PEE sing 724 n n C30 O5 PEE doub 725 n n C10 O4 PEE doub 726 n n C10 C11 PEE sing 727 n n C34 C35 PEE sing 728 n n C11 C12 PEE sing 729 n n C35 C36 PEE sing 730 n n C36 C37 PEE sing 731 n n C37 C38 PEE sing 732 n n C38 C39 PEE doub 733 z n C12 C13 PEE sing 734 n n C39 C40 PEE sing 735 n n C13 C14 PEE sing 736 n n C14 C15 PEE sing 737 n n C40 C41 PEE sing 738 n n C15 C16 PEE sing 739 n n C41 C42 PEE sing 740 n n C16 C17 PEE sing 741 n n C42 C43 PEE sing 742 n n C17 C18 PEE sing 743 n n C43 C44 PEE sing 744 n n C18 C19 PEE doub 745 z n C46 C47 PEE sing 746 n n C46 C45 PEE sing 747 n n C44 C45 PEE sing 748 n n C19 C20 PEE sing 749 n n C20 C21 PEE sing 750 n n C21 C22 PEE sing 751 n n C22 C23 PEE sing 752 n n C23 C24 PEE sing 753 n n C24 C25 PEE sing 754 n n C26 C25 PEE sing 755 n n C26 C27 PEE sing 756 n n C27 H7 PEE sing 757 n n C27 H8 PEE sing 758 n n C27 H82 PEE sing 759 n n C26 H5 PEE sing 760 n n C26 H6 PEE sing 761 n n C25 H12 PEE sing 762 n n C25 H4 PEE sing 763 n n C24 H10 PEE sing 764 n n C24 H11 PEE sing 765 n n C23 H83 PEE sing 766 n n C23 H9 PEE sing 767 n n C22 H2 PEE sing 768 n n C22 H3 PEE sing 769 n n C21 H14 PEE sing 770 n n C21 H1 PEE sing 771 n n C20 H16 PEE sing 772 n n C20 H13 PEE sing 773 n n C19 H18 PEE sing 774 n n C18 H20 PEE sing 775 n n C17 H22 PEE sing 776 n n C17 H19 PEE sing 777 n n C16 H21 PEE sing 778 n n C16 H28 PEE sing 779 n n C15 H23 PEE sing 780 n n C15 H24 PEE sing 781 n n C14 H25 PEE sing 782 n n C14 H26 PEE sing 783 n n C13 H17 PEE sing 784 n n C13 H27 PEE sing 785 n n C12 H15 PEE sing 786 n n C12 H29 PEE sing 787 n n C11 H30 PEE sing 788 n n C11 H31 PEE sing 789 n n C2 H32 PEE sing 790 n n C1 H33 PEE sing 791 n n C1 H34 PEE sing 792 n n O2P H35 PEE sing 793 n n C4 H36 PEE sing 794 n n C4 H37 PEE sing 795 n n C5 H38 PEE sing 796 n n C5 H39 PEE sing 797 n n N H40 PEE sing 798 n n N H41 PEE sing 799 n n C3 H43 PEE sing 800 n n C3 H44 PEE sing 801 n n C31 H45 PEE sing 802 n n C31 H46 PEE sing 803 n n C32 H47 PEE sing 804 n n C32 H48 PEE sing 805 n n C33 H49 PEE sing 806 n n C33 H50 PEE sing 807 n n C34 H51 PEE sing 808 n n C34 H52 PEE sing 809 n n C35 H53 PEE sing 810 n n C35 H54 PEE sing 811 n n C36 H55 PEE sing 812 n n C36 H56 PEE sing 813 n n C37 H57 PEE sing 814 n n C37 H58 PEE sing 815 n n C38 H59 PEE sing 816 n n C39 H60 PEE sing 817 n n C40 H81 PEE sing 818 n n C40 H61 PEE sing 819 n n C41 H80 PEE sing 820 n n C41 H62 PEE sing 821 n n C42 H63 PEE sing 822 n n C42 H64 PEE sing 823 n n C43 H65 PEE sing 824 n n C43 H66 PEE sing 825 n n C44 H67 PEE sing 826 n n C44 H68 PEE sing 827 n n C45 H69 PEE sing 828 n n C45 H70 PEE sing 829 n n C46 H71 PEE sing 830 n n C46 H72 PEE sing 831 n n C47 H73 PEE sing 832 n n C47 H74 PEE sing 833 n n C47 H75 PEE sing 834 n n # _atom_sites.entry_id 8ZOS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 A1D6K A 1 401 401 A1D6K LIG . X 13 HEM A 1 402 404 HEM HEM . Y 13 HEM A 1 403 405 HEM HEM . Z 14 PEE A 1 404 497 PEE PEE . AA 15 HEC B 1 401 406 HEC HEC . BA 14 PEE D 1 501 503 PEE PEE . CA 12 A1D6K a 1 401 401 A1D6K LIG . DA 13 HEM a 1 402 401 HEM HEM . EA 13 HEM a 1 403 402 HEM HEM . FA 16 FES a 1 404 302 FES FES . GA 14 PEE a 1 405 498 PEE PEE . HA 17 CDL a 1 406 501 CDL CDL . IA 17 CDL a 1 407 504 CDL CDL . JA 15 HEC b 1 401 403 HEC HEC . KA 16 FES c 1 301 303 FES FES . LA 17 CDL g 1 201 499 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . GA 14 139.089 127.751 172 1 15.66 ? C27 PEE 405 a 1 HETATM 2 C C26 PEE . . . GA 14 138.181 128.492 171.017 1 15.66 ? C26 PEE 405 a 1 HETATM 3 C C25 PEE . . . GA 14 136.933 127.637 170.694 1 15.66 ? C25 PEE 405 a 1 HETATM 4 C C24 PEE . . . GA 14 136.052 128.396 169.659 1 15.66 ? C24 PEE 405 a 1 HETATM 5 C C23 PEE . . . GA 14 134.745 127.626 169.389 1 15.66 ? C23 PEE 405 a 1 HETATM 6 C C22 PEE . . . GA 14 133.576 128.411 170.037 1 15.66 ? C22 PEE 405 a 1 HETATM 7 C C21 PEE . . . GA 14 132.227 127.86 169.513 1 15.66 ? C21 PEE 405 a 1 HETATM 8 C C20 PEE . . . GA 14 131.097 128.904 169.795 1 15.66 ? C20 PEE 405 a 1 HETATM 9 C C19 PEE . . . GA 14 130.007 128.79 168.682 1 15.66 ? C19 PEE 405 a 1 HETATM 10 C C18 PEE . . . GA 14 129.364 130.18 168.426 1 15.66 ? C18 PEE 405 a 1 HETATM 11 C C17 PEE . . . GA 14 129.11 130.372 166.897 1 15.66 ? C17 PEE 405 a 1 HETATM 12 C C16 PEE . . . GA 14 129.987 131.564 166.41 1 15.66 ? C16 PEE 405 a 1 HETATM 13 C C15 PEE . . . GA 14 129.479 132.065 165.039 1 15.66 ? C15 PEE 405 a 1 HETATM 14 C C14 PEE . . . GA 14 129.547 130.889 164.013 1 15.66 ? C14 PEE 405 a 1 HETATM 15 C C13 PEE . . . GA 14 128.562 131.173 162.845 1 15.66 ? C13 PEE 405 a 1 HETATM 16 C C12 PEE . . . GA 14 127.51 130.029 162.802 1 15.66 ? C12 PEE 405 a 1 HETATM 17 C C11 PEE . . . GA 14 126.882 130.016 161.388 1 15.66 ? C11 PEE 405 a 1 HETATM 18 C C10 PEE . . . GA 14 125.328 130.112 161.479 1 15.66 ? C10 PEE 405 a 1 HETATM 19 O O4 PEE . . . GA 14 124.817 131.124 161.792 1 15.66 ? O4 PEE 405 a 1 HETATM 20 O O2 PEE . . . GA 14 124.54 128.97 161.157 1 15.66 ? O2 PEE 405 a 1 HETATM 21 C C2 PEE . . . GA 14 123.207 129.238 160.84 1 15.66 ? C2 PEE 405 a 1 HETATM 22 C C1 PEE . . . GA 14 122.961 128.876 159.378 1 15.66 ? C1 PEE 405 a 1 HETATM 23 O O3P PEE . . . GA 14 123.52 129.886 158.554 1 15.66 ? O3P PEE 405 a 1 HETATM 24 P P PEE . . . GA 14 124.506 129.442 157.286 1 15.66 ? P PEE 405 a 1 HETATM 25 O O2P PEE . . . GA 14 125.444 128.373 157.738 1 15.66 ? O2P PEE 405 a 1 HETATM 26 O O1P PEE . . . GA 14 125.286 130.618 156.789 1 15.66 ? O1P PEE 405 a 1 HETATM 27 O O4P PEE . . . GA 14 123.653 128.727 156.071 1 15.66 ? O4P PEE 405 a 1 HETATM 28 C C4 PEE . . . GA 14 123.789 127.318 155.982 1 15.66 ? C4 PEE 405 a 1 HETATM 29 C C5 PEE . . . GA 14 122.561 126.716 155.273 1 15.66 ? C5 PEE 405 a 1 HETATM 30 N N PEE . . . GA 14 122.527 125.275 155.531 1 15.66 ? N PEE 405 a 1 HETATM 31 C C3 PEE . . . GA 14 122.303 128.379 161.726 1 15.66 ? C3 PEE 405 a 1 HETATM 32 O O3 PEE . . . GA 14 121.574 129.225 162.602 1 15.66 ? O3 PEE 405 a 1 HETATM 33 C C30 PEE . . . GA 14 122.166 129.357 163.89 1 15.66 ? C30 PEE 405 a 1 HETATM 34 O O5 PEE . . . GA 14 122.773 128.457 164.349 1 15.66 ? O5 PEE 405 a 1 HETATM 35 C C31 PEE . . . GA 14 122.013 130.669 164.706 1 15.66 ? C31 PEE 405 a 1 HETATM 36 C C32 PEE . . . GA 14 121.993 130.291 166.218 1 15.66 ? C32 PEE 405 a 1 HETATM 37 C C33 PEE . . . GA 14 123.378 130.595 166.85 1 15.66 ? C33 PEE 405 a 1 HETATM 38 C C34 PEE . . . GA 14 123.527 129.76 168.152 1 15.66 ? C34 PEE 405 a 1 HETATM 39 C C35 PEE . . . GA 14 124.493 130.489 169.123 1 15.66 ? C35 PEE 405 a 1 HETATM 40 C C36 PEE . . . GA 14 124.831 129.522 170.302 1 15.66 ? C36 PEE 405 a 1 HETATM 41 C C37 PEE . . . GA 14 126.362 129.576 170.602 1 15.66 ? C37 PEE 405 a 1 HETATM 42 C C38 PEE . . . GA 14 126.577 129.801 172.123 1 15.66 ? C38 PEE 405 a 1 HETATM 43 C C39 PEE . . . GA 14 127.917 130.584 172.34 1 15.66 ? C39 PEE 405 a 1 HETATM 44 C C40 PEE . . . GA 14 128.903 129.727 173.174 1 15.66 ? C40 PEE 405 a 1 HETATM 45 C C41 PEE . . . GA 14 129.932 130.683 173.862 1 15.66 ? C41 PEE 405 a 1 HETATM 46 C C42 PEE . . . GA 14 131.19 129.894 174.337 1 15.66 ? C42 PEE 405 a 1 HETATM 47 C C43 PEE . . . GA 14 130.816 128.941 175.502 1 15.66 ? C43 PEE 405 a 1 HETATM 48 C C44 PEE . . . GA 14 132.092 128.557 176.312 1 15.66 ? C44 PEE 405 a 1 HETATM 49 C C45 PEE . . . GA 14 133.115 127.838 175.388 1 15.66 ? C45 PEE 405 a 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 49 #