data_8ZOW # _model_server_result.job_id DwrHvaOBZ1lkhcllYDZPPQ _model_server_result.datetime_utc '2024-12-26 13:06:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":403}' # _entry.id 8ZOW # _exptl.entry_id 8ZOW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZOW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZOW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 Y N N ? 13 Z N N ? 13 GA N N ? 13 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 82 A HIS 83 1_555 Z FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc2 A NE2 HIS 96 A HIS 97 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc3 A NE2 HIS 181 A HIS 182 1_555 Z FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc4 A NE2 HIS 195 A HIS 196 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc5 B NE2 HIS 41 B HIS 126 1_555 CA FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 L NE2 HIS 82 a HIS 83 1_555 GA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc7 L NE2 HIS 96 a HIS 97 1_555 HA FE HEM . a HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc8 L NE2 HIS 181 a HIS 182 1_555 GA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc9 L NE2 HIS 195 a HIS 196 1_555 HA FE HEM . a HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc10 M NE2 HIS 41 b HIS 126 1_555 KA FE HEC . b HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc11 N SG CYS 160 c CYS 238 1_555 LA FE1 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 520 n n CHA C4D HEM doub 521 n n CHA HHA HEM sing 522 n n CHB C4A HEM sing 523 n n CHB C1B HEM doub 524 n n CHB HHB HEM sing 525 n n CHC C4B HEM sing 526 n n CHC C1C HEM doub 527 n n CHC HHC HEM sing 528 n n CHD C4C HEM doub 529 n n CHD C1D HEM sing 530 n n CHD HHD HEM sing 531 n n C1A C2A HEM doub 532 n y C1A NA HEM sing 533 n y C2A C3A HEM sing 534 n y C2A CAA HEM sing 535 n n C3A C4A HEM doub 536 n y C3A CMA HEM sing 537 n n C4A NA HEM sing 538 n y CMA HMA HEM sing 539 n n CMA HMAA HEM sing 540 n n CMA HMAB HEM sing 541 n n CAA CBA HEM sing 542 n n CAA HAA HEM sing 543 n n CAA HAAA HEM sing 544 n n CBA CGA HEM sing 545 n n CBA HBA HEM sing 546 n n CBA HBAA HEM sing 547 n n CGA O1A HEM doub 548 n n CGA O2A HEM sing 549 n n C1B C2B HEM sing 550 n n C1B NB HEM sing 551 n n C2B C3B HEM doub 552 n n C2B CMB HEM sing 553 n n C3B C4B HEM sing 554 n n C3B CAB HEM sing 555 n n C4B NB HEM doub 556 n n CMB HMB HEM sing 557 n n CMB HMBA HEM sing 558 n n CMB HMBB HEM sing 559 n n CAB CBB HEM doub 560 n n CAB HAB HEM sing 561 n n CBB HBB HEM sing 562 n n CBB HBBA HEM sing 563 n n C1C C2C HEM sing 564 n y C1C NC HEM sing 565 n y C2C C3C HEM doub 566 n y C2C CMC HEM sing 567 n n C3C C4C HEM sing 568 n y C3C CAC HEM sing 569 n n C4C NC HEM sing 570 n y CMC HMC HEM sing 571 n n CMC HMCA HEM sing 572 n n CMC HMCB HEM sing 573 n n CAC CBC HEM doub 574 n n CAC HAC HEM sing 575 n n CBC HBC HEM sing 576 n n CBC HBCA HEM sing 577 n n C1D C2D HEM sing 578 n n C1D ND HEM doub 579 n n C2D C3D HEM doub 580 n n C2D CMD HEM sing 581 n n C3D C4D HEM sing 582 n n C3D CAD HEM sing 583 n n C4D ND HEM sing 584 n n CMD HMD HEM sing 585 n n CMD HMDA HEM sing 586 n n CMD HMDB HEM sing 587 n n CAD CBD HEM sing 588 n n CAD HAD HEM sing 589 n n CAD HADA HEM sing 590 n n CBD CGD HEM sing 591 n n CBD HBD HEM sing 592 n n CBD HBDA HEM sing 593 n n CGD O1D HEM doub 594 n n CGD O2D HEM sing 595 n n O2A H2A HEM sing 596 n n O2D H2D HEM sing 597 n n FE NA HEM sing 598 n n FE NB HEM sing 599 n n FE NC HEM sing 600 n n FE ND HEM sing 601 n n # _atom_sites.entry_id 8ZOW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 A1D6P A 1 401 401 A1D6P LIG . X 12 A1D6P A 1 402 402 A1D6P LIG . Y 13 HEM A 1 403 404 HEM HEM . Z 13 HEM A 1 404 405 HEM HEM . AA 14 PEE A 1 405 497 PEE PEE . BA 15 CDL A 1 406 504 CDL CDL . CA 16 HEC B 1 401 406 HEC HEC . DA 17 FES C 1 301 302 FES FES . EA 12 A1D6P a 1 401 401 A1D6P LIG . FA 12 A1D6P a 1 402 402 A1D6P LIG . GA 13 HEM a 1 403 401 HEM HEM . HA 13 HEM a 1 404 402 HEM HEM . IA 14 PEE a 1 405 498 PEE PEE . JA 15 CDL a 1 406 501 CDL CDL . KA 16 HEC b 1 401 403 HEC HEC . LA 17 FES c 1 301 303 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . GA 13 155.623 149.326 180.708 1 34.97 ? CHA HEM 403 a 1 HETATM 2 C CHB HEM . . . GA 13 157.16 150.844 176.339 1 34.97 ? CHB HEM 403 a 1 HETATM 3 C CHC HEM . . . GA 13 153.757 148.225 174.182 1 34.97 ? CHC HEM 403 a 1 HETATM 4 C CHD HEM . . . GA 13 151.931 147.138 178.561 1 34.97 ? CHD HEM 403 a 1 HETATM 5 C C1A HEM . . . GA 13 156.341 149.925 179.693 1 34.97 ? C1A HEM 403 a 1 HETATM 6 C C2A HEM . . . GA 13 157.529 150.722 179.859 1 34.97 ? C2A HEM 403 a 1 HETATM 7 C C3A HEM . . . GA 13 157.949 151.134 178.668 1 34.97 ? C3A HEM 403 a 1 HETATM 8 C C4A HEM . . . GA 13 157.043 150.62 177.684 1 34.97 ? C4A HEM 403 a 1 HETATM 9 C CMA HEM . . . GA 13 159.177 152.008 178.371 1 34.97 ? CMA HEM 403 a 1 HETATM 10 C CAA HEM . . . GA 13 158.209 151.021 181.199 1 34.97 ? CAA HEM 403 a 1 HETATM 11 C CBA HEM . . . GA 13 159.154 149.854 181.414 1 34.97 ? CBA HEM 403 a 1 HETATM 12 C CGA HEM . . . GA 13 159.645 149.798 182.82 1 34.97 ? CGA HEM 403 a 1 HETATM 13 O O1A HEM . . . GA 13 158.972 149.14 183.637 1 34.97 ? O1A HEM 403 a 1 HETATM 14 O O2A HEM . . . GA 13 160.703 150.394 183.114 1 34.97 ? O2A HEM 403 a 1 HETATM 15 C C1B HEM . . . GA 13 156.403 150.274 175.356 1 34.97 ? C1B HEM 403 a 1 HETATM 16 C C2B HEM . . . GA 13 156.567 150.448 173.938 1 34.97 ? C2B HEM 403 a 1 HETATM 17 C C3B HEM . . . GA 13 155.632 149.747 173.314 1 34.97 ? C3B HEM 403 a 1 HETATM 18 C C4B HEM . . . GA 13 154.834 149.067 174.321 1 34.97 ? C4B HEM 403 a 1 HETATM 19 C CMB HEM . . . GA 13 157.628 151.317 173.242 1 34.97 ? CMB HEM 403 a 1 HETATM 20 C CAB HEM . . . GA 13 155.558 149.744 171.772 1 34.97 ? CAB HEM 403 a 1 HETATM 21 C CBB HEM . . . GA 13 154.504 149.347 171.062 1 34.97 ? CBB HEM 403 a 1 HETATM 22 C C1C HEM . . . GA 13 152.954 147.741 175.204 1 34.97 ? C1C HEM 403 a 1 HETATM 23 C C2C HEM . . . GA 13 151.734 146.987 175.028 1 34.97 ? C2C HEM 403 a 1 HETATM 24 C C3C HEM . . . GA 13 151.234 146.708 176.238 1 34.97 ? C3C HEM 403 a 1 HETATM 25 C C4C HEM . . . GA 13 152.129 147.255 177.209 1 34.97 ? C4C HEM 403 a 1 HETATM 26 C CMC HEM . . . GA 13 151.183 146.647 173.631 1 34.97 ? CMC HEM 403 a 1 HETATM 27 C CAC HEM . . . GA 13 149.984 145.938 176.719 1 34.97 ? CAC HEM 403 a 1 HETATM 28 C CBC HEM . . . GA 13 149.224 145.104 176.009 1 34.97 ? CBC HEM 403 a 1 HETATM 29 C C1D HEM . . . GA 13 152.76 147.599 179.546 1 34.97 ? C1D HEM 403 a 1 HETATM 30 C C2D HEM . . . GA 13 152.594 147.429 180.967 1 34.97 ? C2D HEM 403 a 1 HETATM 31 C C3D HEM . . . GA 13 153.61 148.031 181.576 1 34.97 ? C3D HEM 403 a 1 HETATM 32 C C4D HEM . . . GA 13 154.463 148.611 180.554 1 34.97 ? C4D HEM 403 a 1 HETATM 33 C CMD HEM . . . GA 13 151.446 146.686 181.677 1 34.97 ? CMD HEM 403 a 1 HETATM 34 C CAD HEM . . . GA 13 153.794 148.075 183.113 1 34.97 ? CAD HEM 403 a 1 HETATM 35 C CBD HEM . . . GA 13 154.653 146.912 183.585 1 34.97 ? CBD HEM 403 a 1 HETATM 36 C CGD HEM . . . GA 13 156.049 147.417 183.787 1 34.97 ? CGD HEM 403 a 1 HETATM 37 O O1D HEM . . . GA 13 157.012 146.678 183.494 1 34.97 ? O1D HEM 403 a 1 HETATM 38 O O2D HEM . . . GA 13 156.197 148.575 184.222 1 34.97 ? O2D HEM 403 a 1 HETATM 39 N NA HEM . . . GA 13 156.075 149.886 178.336 1 34.97 ? NA HEM 403 a 1 HETATM 40 N NB HEM . . . GA 13 155.343 149.427 175.551 1 34.97 ? NB HEM 403 a 1 HETATM 41 N NC HEM . . . GA 13 153.165 147.879 176.563 1 34.97 ? NC HEM 403 a 1 HETATM 42 N ND HEM . . . GA 13 153.907 148.322 179.33 1 34.97 ? ND HEM 403 a 1 HETATM 43 FE FE HEM . . . GA 13 154.7 148.814 177.439 1 34.97 ? FE HEM 403 a 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #