data_8ZOZ # _model_server_result.job_id klt7pthHIhhzJvdJH_q08Q _model_server_result.datetime_utc '2025-01-10 08:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zoz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 8ZOZ # _exptl.entry_id 8ZOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZOZ _cell.length_a 147.509 _cell.length_b 167.732 _cell.length_c 150.726 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 M N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 8ZOZ _atom_sites.fract_transf_matrix[1][1] 0.006779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP A 1 401 401 AMP AMP . F 3 SO4 A 1 402 402 SO4 SO4 . G 3 SO4 A 1 403 403 SO4 SO4 . H 2 AMP C 1 401 401 AMP AMP . I 3 SO4 C 1 402 402 SO4 SO4 . J 2 AMP B 1 401 401 AMP AMP . K 3 SO4 B 1 402 402 SO4 SO4 . L 3 SO4 B 1 403 403 SO4 SO4 . M 2 AMP D 1 401 401 AMP AMP . N 3 SO4 D 1 402 403 SO4 SO4 . O 4 HOH A 1 501 56 HOH HOH . O 4 HOH A 2 502 42 HOH HOH . O 4 HOH A 3 503 4 HOH HOH . O 4 HOH A 4 504 29 HOH HOH . O 4 HOH A 5 505 41 HOH HOH . O 4 HOH A 6 506 40 HOH HOH . O 4 HOH A 7 507 62 HOH HOH . O 4 HOH A 8 508 49 HOH HOH . O 4 HOH A 9 509 72 HOH HOH . O 4 HOH A 10 510 45 HOH HOH . O 4 HOH A 11 511 15 HOH HOH . O 4 HOH A 12 512 6 HOH HOH . O 4 HOH A 13 513 50 HOH HOH . O 4 HOH A 14 514 13 HOH HOH . O 4 HOH A 15 515 85 HOH HOH . O 4 HOH A 16 516 26 HOH HOH . O 4 HOH A 17 517 24 HOH HOH . O 4 HOH A 18 518 47 HOH HOH . O 4 HOH A 19 519 59 HOH HOH . O 4 HOH A 20 520 54 HOH HOH . O 4 HOH A 21 521 19 HOH HOH . O 4 HOH A 22 522 64 HOH HOH . O 4 HOH A 23 523 25 HOH HOH . O 4 HOH A 24 524 39 HOH HOH . O 4 HOH A 25 525 16 HOH HOH . O 4 HOH A 26 526 27 HOH HOH . P 4 HOH C 1 501 70 HOH HOH . P 4 HOH C 2 502 3 HOH HOH . P 4 HOH C 3 503 37 HOH HOH . P 4 HOH C 4 504 9 HOH HOH . P 4 HOH C 5 505 17 HOH HOH . P 4 HOH C 6 506 38 HOH HOH . P 4 HOH C 7 507 61 HOH HOH . P 4 HOH C 8 508 5 HOH HOH . P 4 HOH C 9 509 80 HOH HOH . P 4 HOH C 10 510 58 HOH HOH . P 4 HOH C 11 511 84 HOH HOH . P 4 HOH C 12 512 60 HOH HOH . P 4 HOH C 13 513 2 HOH HOH . P 4 HOH C 14 514 8 HOH HOH . P 4 HOH C 15 515 71 HOH HOH . P 4 HOH C 16 516 77 HOH HOH . P 4 HOH C 17 517 75 HOH HOH . Q 4 HOH B 1 501 74 HOH HOH . Q 4 HOH B 2 502 22 HOH HOH . Q 4 HOH B 3 503 34 HOH HOH . Q 4 HOH B 4 504 21 HOH HOH . Q 4 HOH B 5 505 82 HOH HOH . Q 4 HOH B 6 506 51 HOH HOH . Q 4 HOH B 7 507 23 HOH HOH . Q 4 HOH B 8 508 76 HOH HOH . Q 4 HOH B 9 509 12 HOH HOH . Q 4 HOH B 10 510 10 HOH HOH . Q 4 HOH B 11 511 63 HOH HOH . Q 4 HOH B 12 512 83 HOH HOH . Q 4 HOH B 13 513 14 HOH HOH . Q 4 HOH B 14 514 44 HOH HOH . Q 4 HOH B 15 515 32 HOH HOH . Q 4 HOH B 16 516 28 HOH HOH . Q 4 HOH B 17 517 78 HOH HOH . Q 4 HOH B 18 518 33 HOH HOH . Q 4 HOH B 19 519 67 HOH HOH . Q 4 HOH B 20 520 89 HOH HOH . Q 4 HOH B 21 521 73 HOH HOH . Q 4 HOH B 22 522 46 HOH HOH . Q 4 HOH B 23 523 48 HOH HOH . R 4 HOH D 1 501 1 HOH HOH . R 4 HOH D 2 502 18 HOH HOH . R 4 HOH D 3 503 81 HOH HOH . R 4 HOH D 4 504 11 HOH HOH . R 4 HOH D 5 505 43 HOH HOH . R 4 HOH D 6 506 36 HOH HOH . R 4 HOH D 7 507 7 HOH HOH . R 4 HOH D 8 508 35 HOH HOH . R 4 HOH D 9 509 68 HOH HOH . R 4 HOH D 10 510 52 HOH HOH . R 4 HOH D 11 511 31 HOH HOH . R 4 HOH D 12 512 66 HOH HOH . R 4 HOH D 13 513 20 HOH HOH . R 4 HOH D 14 514 65 HOH HOH . R 4 HOH D 15 515 79 HOH HOH . R 4 HOH D 16 516 53 HOH HOH . R 4 HOH D 17 517 69 HOH HOH . R 4 HOH D 18 518 88 HOH HOH . R 4 HOH D 19 519 87 HOH HOH . R 4 HOH D 20 520 30 HOH HOH . R 4 HOH D 21 521 57 HOH HOH . R 4 HOH D 22 522 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . H 2 -42.262 58.3 49.66 1 161.85 0 P AMP 401 C 1 HETATM 2 O O1P AMP . . . H 2 -40.804 58.441 50.08 1 140.52 0 O1P AMP 401 C 1 HETATM 3 O O2P AMP . . . H 2 -42.412 57.42 48.419 1 128.73 0 O2P AMP 401 C 1 HETATM 4 O O3P AMP . . . H 2 -42.943 59.642 49.48 1 183.99 0 O3P AMP 401 C 1 HETATM 5 O O5' AMP . . . H 2 -43.014 57.55 50.919 1 163.75 0 O5' AMP 401 C 1 HETATM 6 C C5' AMP . . . H 2 -43.992 58.248 51.779 1 156.45 0 C5' AMP 401 C 1 HETATM 7 C C4' AMP . . . H 2 -43.294 58.959 52.915 1 154.25 0 C4' AMP 401 C 1 HETATM 8 O O4' AMP . . . H 2 -44.03 58.813 54.158 1 142.31 0 O4' AMP 401 C 1 HETATM 9 C C3' AMP . . . H 2 -41.882 58.455 53.247 1 166.46 0 C3' AMP 401 C 1 HETATM 10 O O3' AMP . . . H 2 -40.895 59.277 52.635 1 190.04 0 O3' AMP 401 C 1 HETATM 11 C C2' AMP . . . H 2 -41.806 58.489 54.781 1 158.84 0 C2' AMP 401 C 1 HETATM 12 O O2' AMP . . . H 2 -40.745 59.257 55.307 1 157.71 0 O2' AMP 401 C 1 HETATM 13 C C1' AMP . . . H 2 -43.131 59.116 55.203 1 148.55 0 C1' AMP 401 C 1 HETATM 14 N N9 AMP . . . H 2 -43.591 58.574 56.481 1 144.35 0 N9 AMP 401 C 1 HETATM 15 C C8 AMP . . . H 2 -44.873 58.233 56.831 1 148.7 0 C8 AMP 401 C 1 HETATM 16 N N7 AMP . . . H 2 -44.977 57.742 58.042 1 133.33 0 N7 AMP 401 C 1 HETATM 17 C C5 AMP . . . H 2 -43.68 57.745 58.525 1 127.18 0 C5 AMP 401 C 1 HETATM 18 C C6 AMP . . . H 2 -43.135 57.34 59.758 1 128.75 0 C6 AMP 401 C 1 HETATM 19 N N6 AMP . . . H 2 -43.867 56.836 60.749 1 128.59 0 N6 AMP 401 C 1 HETATM 20 N N1 AMP . . . H 2 -41.797 57.48 59.928 1 128.19 0 N1 AMP 401 C 1 HETATM 21 C C2 AMP . . . H 2 -41.077 57.986 58.916 1 127.71 0 C2 AMP 401 C 1 HETATM 22 N N3 AMP . . . H 2 -41.483 58.401 57.716 1 120.62 0 N3 AMP 401 C 1 HETATM 23 C C4 AMP . . . H 2 -42.813 58.256 57.575 1 129.16 0 C4 AMP 401 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #