data_8ZP0
#
_model_server_result.job_id            xNXd-WZAawcO96JUkEWTmg 
_model_server_result.datetime_utc      '2024-12-26 13:17:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":403}' 
#
_entry.id    8ZP0 
#
_exptl.entry_id    8ZP0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZP0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 Y N N 
? 13 Z N N 
? 13 HA N N 
? 13 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 82 A HIS 83 1_555 Z FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 97 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
metalc ? metalc3 A NE2 HIS 181 A HIS 182 1_555 Z FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc4 A NE2 HIS 195 A HIS 196 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc5 B NE2 HIS 41 B HIS 126 1_555 CA FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc6 L NE2 HIS 82 a HIS 83 1_555 HA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc7 L NE2 HIS 96 a HIS 97 1_555 IA FE HEM . a HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc8 L NE2 HIS 181 a HIS 182 1_555 HA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc9 L NE2 HIS 195 a HIS 196 1_555 IA FE HEM . a HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc10 M NE2 HIS 41 b HIS 126 1_555 MA FE HEC . b HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 521 n n 
CHA C4D HEM doub 522 n n 
CHA HHA HEM sing 523 n n 
CHB C4A HEM sing 524 n n 
CHB C1B HEM doub 525 n n 
CHB HHB HEM sing 526 n n 
CHC C4B HEM sing 527 n n 
CHC C1C HEM doub 528 n n 
CHC HHC HEM sing 529 n n 
CHD C4C HEM doub 530 n n 
CHD C1D HEM sing 531 n n 
CHD HHD HEM sing 532 n n 
C1A C2A HEM doub 533 n y 
C1A NA HEM sing 534 n y 
C2A C3A HEM sing 535 n y 
C2A CAA HEM sing 536 n n 
C3A C4A HEM doub 537 n y 
C3A CMA HEM sing 538 n n 
C4A NA HEM sing 539 n y 
CMA HMA HEM sing 540 n n 
CMA HMAA HEM sing 541 n n 
CMA HMAB HEM sing 542 n n 
CAA CBA HEM sing 543 n n 
CAA HAA HEM sing 544 n n 
CAA HAAA HEM sing 545 n n 
CBA CGA HEM sing 546 n n 
CBA HBA HEM sing 547 n n 
CBA HBAA HEM sing 548 n n 
CGA O1A HEM doub 549 n n 
CGA O2A HEM sing 550 n n 
C1B C2B HEM sing 551 n n 
C1B NB HEM sing 552 n n 
C2B C3B HEM doub 553 n n 
C2B CMB HEM sing 554 n n 
C3B C4B HEM sing 555 n n 
C3B CAB HEM sing 556 n n 
C4B NB HEM doub 557 n n 
CMB HMB HEM sing 558 n n 
CMB HMBA HEM sing 559 n n 
CMB HMBB HEM sing 560 n n 
CAB CBB HEM doub 561 n n 
CAB HAB HEM sing 562 n n 
CBB HBB HEM sing 563 n n 
CBB HBBA HEM sing 564 n n 
C1C C2C HEM sing 565 n y 
C1C NC HEM sing 566 n y 
C2C C3C HEM doub 567 n y 
C2C CMC HEM sing 568 n n 
C3C C4C HEM sing 569 n y 
C3C CAC HEM sing 570 n n 
C4C NC HEM sing 571 n y 
CMC HMC HEM sing 572 n n 
CMC HMCA HEM sing 573 n n 
CMC HMCB HEM sing 574 n n 
CAC CBC HEM doub 575 n n 
CAC HAC HEM sing 576 n n 
CBC HBC HEM sing 577 n n 
CBC HBCA HEM sing 578 n n 
C1D C2D HEM sing 579 n n 
C1D ND HEM doub 580 n n 
C2D C3D HEM doub 581 n n 
C2D CMD HEM sing 582 n n 
C3D C4D HEM sing 583 n n 
C3D CAD HEM sing 584 n n 
C4D ND HEM sing 585 n n 
CMD HMD HEM sing 586 n n 
CMD HMDA HEM sing 587 n n 
CMD HMDB HEM sing 588 n n 
CAD CBD HEM sing 589 n n 
CAD HAD HEM sing 590 n n 
CAD HADA HEM sing 591 n n 
CBD CGD HEM sing 592 n n 
CBD HBD HEM sing 593 n n 
CBD HBDA HEM sing 594 n n 
CGD O1D HEM doub 595 n n 
CGD O2D HEM sing 596 n n 
O2A H2A HEM sing 597 n n 
O2D H2D HEM sing 598 n n 
FE NA HEM sing 599 n n 
FE NB HEM sing 600 n n 
FE NC HEM sing 601 n n 
FE ND HEM sing 602 n n 
#
_atom_sites.entry_id                     8ZP0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 12 A1D6O A 1 401 401 A1D6O LIG . 
X 12 A1D6O A 1 402 402 A1D6O LIG . 
Y 13 HEM A 1 403 404 HEM HEM . 
Z 13 HEM A 1 404 405 HEM HEM . 
AA 14 PEE A 1 405 497 PEE PEE . 
BA 15 CDL A 1 406 504 CDL CDL . 
CA 16 HEC B 1 401 406 HEC HEC . 
DA 17 FES C 1 301 302 FES FES . 
EA 14 PEE D 1 501 503 PEE PEE . 
FA 12 A1D6O a 1 401 401 A1D6O LIG . 
GA 12 A1D6O a 1 402 402 A1D6O LIG . 
HA 13 HEM a 1 403 401 HEM HEM . 
IA 13 HEM a 1 404 402 HEM HEM . 
JA 14 PEE a 1 405 498 PEE PEE . 
KA 15 CDL a 1 406 499 CDL CDL . 
LA 15 CDL a 1 407 501 CDL CDL . 
MA 16 HEC b 1 401 403 HEC HEC . 
NA 17 FES c 1 301 303 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . Y 13 161.383 170.15 162.655 1 24.19 ? CHA HEM 403 A 1 
HETATM 2 C CHB HEM . . . Y 13 161.209 167.402 166.628 1 24.19 ? CHB HEM 403 A 1 
HETATM 3 C CHC HEM . . . Y 13 158.589 170.832 168.863 1 24.19 ? CHC HEM 403 A 1 
HETATM 4 C CHD HEM . . . Y 13 158.187 173.202 164.665 1 24.19 ? CHD HEM 403 A 1 
HETATM 5 C C1A HEM . . . Y 13 161.648 169.136 163.549 1 24.19 ? C1A HEM 403 A 1 
HETATM 6 C C2A HEM . . . Y 13 162.564 168.038 163.376 1 24.19 ? C2A HEM 403 A 1 
HETATM 7 C C3A HEM . . . Y 13 162.516 167.272 164.466 1 24.19 ? C3A HEM 403 A 1 
HETATM 8 C C4A HEM . . . Y 13 161.57 167.861 165.381 1 24.19 ? C4A HEM 403 A 1 
HETATM 9 C CMA HEM . . . Y 13 163.331 165.98 164.709 1 24.19 ? CMA HEM 403 A 1 
HETATM 10 C CAA HEM . . . Y 13 163.449 167.802 162.129 1 24.19 ? CAA HEM 403 A 1 
HETATM 11 C CBA HEM . . . Y 13 164.87 168.331 162.325 1 24.19 ? CBA HEM 403 A 1 
HETATM 12 C CGA HEM . . . Y 13 165.042 169.796 162.581 1 24.19 ? CGA HEM 403 A 1 
HETATM 13 O O1A HEM . . . Y 13 164.787 170.615 161.679 1 24.19 ? O1A HEM 403 A 1 
HETATM 14 O O2A HEM . . . Y 13 165.477 170.157 163.685 1 24.19 ? O2A HEM 403 A 1 
HETATM 15 C C1B HEM . . . Y 13 160.485 168.082 167.59 1 24.19 ? C1B HEM 403 A 1 
HETATM 16 C C2B HEM . . . Y 13 160.177 167.612 168.913 1 24.19 ? C2B HEM 403 A 1 
HETATM 17 C C3B HEM . . . Y 13 159.45 168.57 169.536 1 24.19 ? C3B HEM 403 A 1 
HETATM 18 C C4B HEM . . . Y 13 159.273 169.659 168.617 1 24.19 ? C4B HEM 403 A 1 
HETATM 19 C CMB HEM . . . Y 13 160.672 166.235 169.414 1 24.19 ? CMB HEM 403 A 1 
HETATM 20 C CAB HEM . . . Y 13 158.832 168.666 170.958 1 24.19 ? CAB HEM 403 A 1 
HETATM 21 C CBB HEM . . . Y 13 158.862 167.768 171.939 1 24.19 ? CBB HEM 403 A 1 
HETATM 22 C C1C HEM . . . Y 13 158.294 171.825 167.954 1 24.19 ? C1C HEM 403 A 1 
HETATM 23 C C2C HEM . . . Y 13 157.709 173.116 168.219 1 24.19 ? C2C HEM 403 A 1 
HETATM 24 C C3C HEM . . . Y 13 157.609 173.79 167.052 1 24.19 ? C3C HEM 403 A 1 
HETATM 25 C C4C HEM . . . Y 13 158.113 172.924 166.018 1 24.19 ? C4C HEM 403 A 1 
HETATM 26 C CMC HEM . . . Y 13 157.331 173.567 169.647 1 24.19 ? CMC HEM 403 A 1 
HETATM 27 C CAC HEM . . . Y 13 157.039 175.194 166.701 1 24.19 ? CAC HEM 403 A 1 
HETATM 28 C CBC HEM . . . Y 13 156.108 175.891 167.35 1 24.19 ? CBC HEM 403 A 1 
HETATM 29 C C1D HEM . . . Y 13 159.018 172.594 163.742 1 24.19 ? C1D HEM 403 A 1 
HETATM 30 C C2D HEM . . . Y 13 159.233 172.997 162.375 1 24.19 ? C2D HEM 403 A 1 
HETATM 31 C C3D HEM . . . Y 13 160.119 172.15 161.821 1 24.19 ? C3D HEM 403 A 1 
HETATM 32 C C4D HEM . . . Y 13 160.491 171.185 162.818 1 24.19 ? C4D HEM 403 A 1 
HETATM 33 C CMD HEM . . . Y 13 158.54 174.207 161.703 1 24.19 ? CMD HEM 403 A 1 
HETATM 34 C CAD HEM . . . Y 13 160.683 172.165 160.376 1 24.19 ? CAD HEM 403 A 1 
HETATM 35 C CBD HEM . . . Y 13 161.805 173.185 160.302 1 24.19 ? CBD HEM 403 A 1 
HETATM 36 C CGD HEM . . . Y 13 162.597 173.243 159.033 1 24.19 ? CGD HEM 403 A 1 
HETATM 37 O O1D HEM . . . Y 13 162.754 172.23 158.331 1 24.19 ? O1D HEM 403 A 1 
HETATM 38 O O2D HEM . . . Y 13 163.111 174.332 158.733 1 24.19 ? O2D HEM 403 A 1 
HETATM 39 N NA HEM . . . Y 13 161.066 168.993 164.783 1 24.19 ? NA HEM 403 A 1 
HETATM 40 N NB HEM . . . Y 13 159.912 169.326 167.448 1 24.19 ? NB HEM 403 A 1 
HETATM 41 N NC HEM . . . Y 13 158.526 171.752 166.609 1 24.19 ? NC HEM 403 A 1 
HETATM 42 N ND HEM . . . Y 13 159.799 171.484 163.972 1 24.19 ? ND HEM 403 A 1 
HETATM 43 FE FE HEM . . . Y 13 159.863 170.396 165.735 1 24.19 ? FE HEM 403 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#