data_8ZP0
#
_model_server_result.job_id            MdTrOeYpKG6SLq1p_Y6ytA 
_model_server_result.datetime_utc      '2024-12-26 12:41:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":404}' 
#
_entry.id    8ZP0 
#
_exptl.entry_id    8ZP0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZP0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 Y N N 
? 13 Z N N 
? 13 HA N N 
? 13 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 82 A HIS 83 1_555 Z FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 97 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
metalc ? metalc3 A NE2 HIS 181 A HIS 182 1_555 Z FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc4 A NE2 HIS 195 A HIS 196 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc5 B NE2 HIS 41 B HIS 126 1_555 CA FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc6 L NE2 HIS 82 a HIS 83 1_555 HA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc7 L NE2 HIS 96 a HIS 97 1_555 IA FE HEM . a HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc8 L NE2 HIS 181 a HIS 182 1_555 HA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc9 L NE2 HIS 195 a HIS 196 1_555 IA FE HEM . a HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc10 M NE2 HIS 41 b HIS 126 1_555 MA FE HEC . b HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 521 n n 
CHA C4D HEM doub 522 n n 
CHA HHA HEM sing 523 n n 
CHB C4A HEM sing 524 n n 
CHB C1B HEM doub 525 n n 
CHB HHB HEM sing 526 n n 
CHC C4B HEM sing 527 n n 
CHC C1C HEM doub 528 n n 
CHC HHC HEM sing 529 n n 
CHD C4C HEM doub 530 n n 
CHD C1D HEM sing 531 n n 
CHD HHD HEM sing 532 n n 
C1A C2A HEM doub 533 n y 
C1A NA HEM sing 534 n y 
C2A C3A HEM sing 535 n y 
C2A CAA HEM sing 536 n n 
C3A C4A HEM doub 537 n y 
C3A CMA HEM sing 538 n n 
C4A NA HEM sing 539 n y 
CMA HMA HEM sing 540 n n 
CMA HMAA HEM sing 541 n n 
CMA HMAB HEM sing 542 n n 
CAA CBA HEM sing 543 n n 
CAA HAA HEM sing 544 n n 
CAA HAAA HEM sing 545 n n 
CBA CGA HEM sing 546 n n 
CBA HBA HEM sing 547 n n 
CBA HBAA HEM sing 548 n n 
CGA O1A HEM doub 549 n n 
CGA O2A HEM sing 550 n n 
C1B C2B HEM sing 551 n n 
C1B NB HEM sing 552 n n 
C2B C3B HEM doub 553 n n 
C2B CMB HEM sing 554 n n 
C3B C4B HEM sing 555 n n 
C3B CAB HEM sing 556 n n 
C4B NB HEM doub 557 n n 
CMB HMB HEM sing 558 n n 
CMB HMBA HEM sing 559 n n 
CMB HMBB HEM sing 560 n n 
CAB CBB HEM doub 561 n n 
CAB HAB HEM sing 562 n n 
CBB HBB HEM sing 563 n n 
CBB HBBA HEM sing 564 n n 
C1C C2C HEM sing 565 n y 
C1C NC HEM sing 566 n y 
C2C C3C HEM doub 567 n y 
C2C CMC HEM sing 568 n n 
C3C C4C HEM sing 569 n y 
C3C CAC HEM sing 570 n n 
C4C NC HEM sing 571 n y 
CMC HMC HEM sing 572 n n 
CMC HMCA HEM sing 573 n n 
CMC HMCB HEM sing 574 n n 
CAC CBC HEM doub 575 n n 
CAC HAC HEM sing 576 n n 
CBC HBC HEM sing 577 n n 
CBC HBCA HEM sing 578 n n 
C1D C2D HEM sing 579 n n 
C1D ND HEM doub 580 n n 
C2D C3D HEM doub 581 n n 
C2D CMD HEM sing 582 n n 
C3D C4D HEM sing 583 n n 
C3D CAD HEM sing 584 n n 
C4D ND HEM sing 585 n n 
CMD HMD HEM sing 586 n n 
CMD HMDA HEM sing 587 n n 
CMD HMDB HEM sing 588 n n 
CAD CBD HEM sing 589 n n 
CAD HAD HEM sing 590 n n 
CAD HADA HEM sing 591 n n 
CBD CGD HEM sing 592 n n 
CBD HBD HEM sing 593 n n 
CBD HBDA HEM sing 594 n n 
CGD O1D HEM doub 595 n n 
CGD O2D HEM sing 596 n n 
O2A H2A HEM sing 597 n n 
O2D H2D HEM sing 598 n n 
FE NA HEM sing 599 n n 
FE NB HEM sing 600 n n 
FE NC HEM sing 601 n n 
FE ND HEM sing 602 n n 
#
_atom_sites.entry_id                     8ZP0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 12 A1D6O A 1 401 401 A1D6O LIG . 
X 12 A1D6O A 1 402 402 A1D6O LIG . 
Y 13 HEM A 1 403 404 HEM HEM . 
Z 13 HEM A 1 404 405 HEM HEM . 
AA 14 PEE A 1 405 497 PEE PEE . 
BA 15 CDL A 1 406 504 CDL CDL . 
CA 16 HEC B 1 401 406 HEC HEC . 
DA 17 FES C 1 301 302 FES FES . 
EA 14 PEE D 1 501 503 PEE PEE . 
FA 12 A1D6O a 1 401 401 A1D6O LIG . 
GA 12 A1D6O a 1 402 402 A1D6O LIG . 
HA 13 HEM a 1 403 401 HEM HEM . 
IA 13 HEM a 1 404 402 HEM HEM . 
JA 14 PEE a 1 405 498 PEE PEE . 
KA 15 CDL a 1 406 499 CDL CDL . 
LA 15 CDL a 1 407 501 CDL CDL . 
MA 16 HEC b 1 401 403 HEC HEC . 
NA 17 FES c 1 301 303 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . Z 13 159.381 165.373 189.227 1 24.19 ? CHA HEM 404 A 1 
HETATM 2 C CHB HEM . . . Z 13 159.642 167.438 184.807 1 24.19 ? CHB HEM 404 A 1 
HETATM 3 C CHC HEM . . . Z 13 158.599 163.179 182.797 1 24.19 ? CHC HEM 404 A 1 
HETATM 4 C CHD HEM . . . Z 13 158.114 161.219 187.192 1 24.19 ? CHD HEM 404 A 1 
HETATM 5 C C1A HEM . . . Z 13 159.587 166.289 188.211 1 24.19 ? C1A HEM 404 A 1 
HETATM 6 C C2A HEM . . . Z 13 160.026 167.652 188.359 1 24.19 ? C2A HEM 404 A 1 
HETATM 7 C C3A HEM . . . Z 13 160.089 168.211 187.149 1 24.19 ? C3A HEM 404 A 1 
HETATM 8 C C4A HEM . . . Z 13 159.698 167.239 186.173 1 24.19 ? C4A HEM 404 A 1 
HETATM 9 C CMA HEM . . . Z 13 160.518 169.653 186.83 1 24.19 ? CMA HEM 404 A 1 
HETATM 10 C CAA HEM . . . Z 13 160.388 168.361 189.683 1 24.19 ? CAA HEM 404 A 1 
HETATM 11 C CBA HEM . . . Z 13 161.713 167.798 190.192 1 24.19 ? CBA HEM 404 A 1 
HETATM 12 C CGA HEM . . . Z 13 162.396 168.699 191.177 1 24.19 ? CGA HEM 404 A 1 
HETATM 13 O O1A HEM . . . Z 13 162.715 168.229 192.287 1 24.19 ? O1A HEM 404 A 1 
HETATM 14 O O2A HEM . . . Z 13 162.632 169.883 190.856 1 24.19 ? O2A HEM 404 A 1 
HETATM 15 C C1B HEM . . . Z 13 159.391 166.471 183.857 1 24.19 ? C1B HEM 404 A 1 
HETATM 16 C C2B HEM . . . Z 13 159.364 166.635 182.42 1 24.19 ? C2B HEM 404 A 1 
HETATM 17 C C3B HEM . . . Z 13 159.08 165.441 181.871 1 24.19 ? C3B HEM 404 A 1 
HETATM 18 C C4B HEM . . . Z 13 158.907 164.509 182.944 1 24.19 ? C4B HEM 404 A 1 
HETATM 19 C CMB HEM . . . Z 13 159.646 167.991 181.738 1 24.19 ? CMB HEM 404 A 1 
HETATM 20 C CAB HEM . . . Z 13 158.897 164.961 180.406 1 24.19 ? CAB HEM 404 A 1 
HETATM 21 C CBB HEM . . . Z 13 158.681 165.696 179.318 1 24.19 ? CBB HEM 404 A 1 
HETATM 22 C C1C HEM . . . Z 13 158.321 162.302 183.824 1 24.19 ? C1C HEM 404 A 1 
HETATM 23 C C2C HEM . . . Z 13 157.795 160.971 183.666 1 24.19 ? C2C HEM 404 A 1 
HETATM 24 C C3C HEM . . . Z 13 157.655 160.439 184.889 1 24.19 ? C3C HEM 404 A 1 
HETATM 25 C C4C HEM . . . Z 13 158.103 161.421 185.835 1 24.19 ? C4C HEM 404 A 1 
HETATM 26 C CMC HEM . . . Z 13 157.464 160.375 182.278 1 24.19 ? CMC HEM 404 A 1 
HETATM 27 C CAC HEM . . . Z 13 157.15 159.065 185.398 1 24.19 ? CAC HEM 404 A 1 
HETATM 28 C CBC HEM . . . Z 13 156.89 157.967 184.686 1 24.19 ? CBC HEM 404 A 1 
HETATM 29 C C1D HEM . . . Z 13 158.426 162.142 188.148 1 24.19 ? C1D HEM 404 A 1 
HETATM 30 C C2D HEM . . . Z 13 158.448 161.914 189.556 1 24.19 ? C2D HEM 404 A 1 
HETATM 31 C C3D HEM . . . Z 13 158.8 163.033 190.178 1 24.19 ? C3D HEM 404 A 1 
HETATM 32 C C4D HEM . . . Z 13 159.006 164.049 189.142 1 24.19 ? C4D HEM 404 A 1 
HETATM 33 C CMD HEM . . . Z 13 158.119 160.579 190.251 1 24.19 ? CMD HEM 404 A 1 
HETATM 34 C CAD HEM . . . Z 13 158.885 163.027 191.735 1 24.19 ? CAD HEM 404 A 1 
HETATM 35 C CBD HEM . . . Z 13 159.471 164.221 192.477 1 24.19 ? CBD HEM 404 A 1 
HETATM 36 C CGD HEM . . . Z 13 160.953 164.275 192.3 1 24.19 ? CGD HEM 404 A 1 
HETATM 37 O O1D HEM . . . Z 13 161.537 165.363 192.47 1 24.19 ? O1D HEM 404 A 1 
HETATM 38 O O2D HEM . . . Z 13 161.551 163.234 191.985 1 24.19 ? O2D HEM 404 A 1 
HETATM 39 N NA HEM . . . Z 13 159.396 166.082 186.86 1 24.19 ? NA HEM 404 A 1 
HETATM 40 N NB HEM . . . Z 13 159.105 165.163 184.136 1 24.19 ? NB HEM 404 A 1 
HETATM 41 N NC HEM . . . Z 13 158.502 162.548 185.166 1 24.19 ? NC HEM 404 A 1 
HETATM 42 N ND HEM . . . Z 13 158.772 163.445 187.93 1 24.19 ? ND HEM 404 A 1 
HETATM 43 FE FE HEM . . . Z 13 159.064 164.341 186.047 1 24.19 ? FE HEM 404 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#