data_8ZP0 # _model_server_result.job_id HHjXJLp2M66dBeAHvdqNPA _model_server_result.datetime_utc '2024-12-26 13:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":405}' # _entry.id 8ZP0 # _exptl.entry_id 8ZP0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZP0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 AA N N ? 14 EA N N ? 14 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 82 A HIS 83 1_555 Z FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc2 A NE2 HIS 96 A HIS 97 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc3 A NE2 HIS 181 A HIS 182 1_555 Z FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc4 A NE2 HIS 195 A HIS 196 1_555 Y FE HEM . A HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc5 B NE2 HIS 41 B HIS 126 1_555 CA FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 L NE2 HIS 82 a HIS 83 1_555 HA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc7 L NE2 HIS 96 a HIS 97 1_555 IA FE HEM . a HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc8 L NE2 HIS 181 a HIS 182 1_555 HA FE HEM . a HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc9 L NE2 HIS 195 a HIS 196 1_555 IA FE HEM . a HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc10 M NE2 HIS 41 b HIS 126 1_555 MA FE HEC . b HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 709 n n C5 C4 PEE sing 710 n n C4 O4P PEE sing 711 n n O4P P PEE sing 712 n n O1P P PEE doub 713 n n C1 O3P PEE sing 714 n n C1 C2 PEE sing 715 n n O3P P PEE sing 716 n n P O2P PEE sing 717 n n C2 C3 PEE sing 718 n n C2 O2 PEE sing 719 n n C3 O3 PEE sing 720 n n O2 C10 PEE sing 721 n n C31 C30 PEE sing 722 n n C31 C32 PEE sing 723 n n C33 C32 PEE sing 724 n n C33 C34 PEE sing 725 n n C30 O3 PEE sing 726 n n C30 O5 PEE doub 727 n n C10 O4 PEE doub 728 n n C10 C11 PEE sing 729 n n C34 C35 PEE sing 730 n n C11 C12 PEE sing 731 n n C35 C36 PEE sing 732 n n C36 C37 PEE sing 733 n n C37 C38 PEE sing 734 n n C38 C39 PEE doub 735 z n C12 C13 PEE sing 736 n n C39 C40 PEE sing 737 n n C13 C14 PEE sing 738 n n C14 C15 PEE sing 739 n n C40 C41 PEE sing 740 n n C15 C16 PEE sing 741 n n C41 C42 PEE sing 742 n n C16 C17 PEE sing 743 n n C42 C43 PEE sing 744 n n C17 C18 PEE sing 745 n n C43 C44 PEE sing 746 n n C18 C19 PEE doub 747 z n C46 C47 PEE sing 748 n n C46 C45 PEE sing 749 n n C44 C45 PEE sing 750 n n C19 C20 PEE sing 751 n n C20 C21 PEE sing 752 n n C21 C22 PEE sing 753 n n C22 C23 PEE sing 754 n n C23 C24 PEE sing 755 n n C24 C25 PEE sing 756 n n C26 C25 PEE sing 757 n n C26 C27 PEE sing 758 n n C27 H7 PEE sing 759 n n C27 H8 PEE sing 760 n n C27 H82 PEE sing 761 n n C26 H5 PEE sing 762 n n C26 H6 PEE sing 763 n n C25 H12 PEE sing 764 n n C25 H4 PEE sing 765 n n C24 H10 PEE sing 766 n n C24 H11 PEE sing 767 n n C23 H83 PEE sing 768 n n C23 H9 PEE sing 769 n n C22 H2 PEE sing 770 n n C22 H3 PEE sing 771 n n C21 H14 PEE sing 772 n n C21 H1 PEE sing 773 n n C20 H16 PEE sing 774 n n C20 H13 PEE sing 775 n n C19 H18 PEE sing 776 n n C18 H20 PEE sing 777 n n C17 H22 PEE sing 778 n n C17 H19 PEE sing 779 n n C16 H21 PEE sing 780 n n C16 H28 PEE sing 781 n n C15 H23 PEE sing 782 n n C15 H24 PEE sing 783 n n C14 H25 PEE sing 784 n n C14 H26 PEE sing 785 n n C13 H17 PEE sing 786 n n C13 H27 PEE sing 787 n n C12 H15 PEE sing 788 n n C12 H29 PEE sing 789 n n C11 H30 PEE sing 790 n n C11 H31 PEE sing 791 n n C2 H32 PEE sing 792 n n C1 H33 PEE sing 793 n n C1 H34 PEE sing 794 n n O2P H35 PEE sing 795 n n C4 H36 PEE sing 796 n n C4 H37 PEE sing 797 n n C5 H38 PEE sing 798 n n C5 H39 PEE sing 799 n n N H40 PEE sing 800 n n N H41 PEE sing 801 n n C3 H43 PEE sing 802 n n C3 H44 PEE sing 803 n n C31 H45 PEE sing 804 n n C31 H46 PEE sing 805 n n C32 H47 PEE sing 806 n n C32 H48 PEE sing 807 n n C33 H49 PEE sing 808 n n C33 H50 PEE sing 809 n n C34 H51 PEE sing 810 n n C34 H52 PEE sing 811 n n C35 H53 PEE sing 812 n n C35 H54 PEE sing 813 n n C36 H55 PEE sing 814 n n C36 H56 PEE sing 815 n n C37 H57 PEE sing 816 n n C37 H58 PEE sing 817 n n C38 H59 PEE sing 818 n n C39 H60 PEE sing 819 n n C40 H81 PEE sing 820 n n C40 H61 PEE sing 821 n n C41 H80 PEE sing 822 n n C41 H62 PEE sing 823 n n C42 H63 PEE sing 824 n n C42 H64 PEE sing 825 n n C43 H65 PEE sing 826 n n C43 H66 PEE sing 827 n n C44 H67 PEE sing 828 n n C44 H68 PEE sing 829 n n C45 H69 PEE sing 830 n n C45 H70 PEE sing 831 n n C46 H71 PEE sing 832 n n C46 H72 PEE sing 833 n n C47 H73 PEE sing 834 n n C47 H74 PEE sing 835 n n C47 H75 PEE sing 836 n n # _atom_sites.entry_id 8ZP0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 12 A1D6O A 1 401 401 A1D6O LIG . X 12 A1D6O A 1 402 402 A1D6O LIG . Y 13 HEM A 1 403 404 HEM HEM . Z 13 HEM A 1 404 405 HEM HEM . AA 14 PEE A 1 405 497 PEE PEE . BA 15 CDL A 1 406 504 CDL CDL . CA 16 HEC B 1 401 406 HEC HEC . DA 17 FES C 1 301 302 FES FES . EA 14 PEE D 1 501 503 PEE PEE . FA 12 A1D6O a 1 401 401 A1D6O LIG . GA 12 A1D6O a 1 402 402 A1D6O LIG . HA 13 HEM a 1 403 401 HEM HEM . IA 13 HEM a 1 404 402 HEM HEM . JA 14 PEE a 1 405 498 PEE PEE . KA 15 CDL a 1 406 499 CDL CDL . LA 15 CDL a 1 407 501 CDL CDL . MA 16 HEC b 1 401 403 HEC HEC . NA 17 FES c 1 301 303 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . JA 14 147.205 127.022 172.456 1 28.78 ? C27 PEE 405 a 1 HETATM 2 C C26 PEE . . . JA 14 147.101 125.674 171.82 1 28.78 ? C26 PEE 405 a 1 HETATM 3 C C25 PEE . . . JA 14 145.857 125.518 171.011 1 28.78 ? C25 PEE 405 a 1 HETATM 4 C C24 PEE . . . JA 14 145.524 124.098 170.638 1 28.78 ? C24 PEE 405 a 1 HETATM 5 C C23 PEE . . . JA 14 144.07 123.777 170.803 1 28.78 ? C23 PEE 405 a 1 HETATM 6 C C22 PEE . . . JA 14 143.352 124.796 171.641 1 28.78 ? C22 PEE 405 a 1 HETATM 7 C C21 PEE . . . JA 14 141.861 124.587 171.774 1 28.78 ? C21 PEE 405 a 1 HETATM 8 C C20 PEE . . . JA 14 141.05 125.381 170.823 1 28.78 ? C20 PEE 405 a 1 HETATM 9 C C19 PEE . . . JA 14 139.876 124.637 170.284 1 28.78 ? C19 PEE 405 a 1 HETATM 10 C C18 PEE . . . JA 14 139.284 124.951 169.178 1 28.78 ? C18 PEE 405 a 1 HETATM 11 C C17 PEE . . . JA 14 139.99 125.672 168.084 1 28.78 ? C17 PEE 405 a 1 HETATM 12 C C16 PEE . . . JA 14 139.214 126.768 167.493 1 28.78 ? C16 PEE 405 a 1 HETATM 13 C C15 PEE . . . JA 14 139.11 126.66 165.99 1 28.78 ? C15 PEE 405 a 1 HETATM 14 C C14 PEE . . . JA 14 139.238 125.263 165.515 1 28.78 ? C14 PEE 405 a 1 HETATM 15 C C13 PEE . . . JA 14 138.747 125.063 164.161 1 28.78 ? C13 PEE 405 a 1 HETATM 16 C C12 PEE . . . JA 14 137.311 124.783 164.122 1 28.78 ? C12 PEE 405 a 1 HETATM 17 C C11 PEE . . . JA 14 137.039 123.706 163.232 1 28.78 ? C11 PEE 405 a 1 HETATM 18 C C10 PEE . . . JA 14 135.611 123.546 163.018 1 28.78 ? C10 PEE 405 a 1 HETATM 19 O O4 PEE . . . JA 14 134.785 124.295 163.305 1 28.78 ? O4 PEE 405 a 1 HETATM 20 O O2 PEE . . . JA 14 135.335 122.447 162.377 1 28.78 ? O2 PEE 405 a 1 HETATM 21 C C2 PEE . . . JA 14 133.975 122.136 162.029 1 28.78 ? C2 PEE 405 a 1 HETATM 22 C C1 PEE . . . JA 14 133.944 121.9 160.546 1 28.78 ? C1 PEE 405 a 1 HETATM 23 O O3P PEE . . . JA 14 134.37 123.162 159.981 1 28.78 ? O3P PEE 405 a 1 HETATM 24 P P PEE . . . JA 14 135.275 123.212 158.672 1 28.78 ? P PEE 405 a 1 HETATM 25 O O2P PEE . . . JA 14 136.454 122.326 158.748 1 28.78 ? O2P PEE 405 a 1 HETATM 26 O O1P PEE . . . JA 14 135.412 124.626 158.278 1 28.78 ? O1P PEE 405 a 1 HETATM 27 O O4P PEE . . . JA 14 134.463 122.196 157.778 1 28.78 ? O4P PEE 405 a 1 HETATM 28 C C4 PEE . . . JA 14 135.19 121.028 157.381 1 28.78 ? C4 PEE 405 a 1 HETATM 29 C C5 PEE . . . JA 14 134.325 120.16 156.571 1 28.78 ? C5 PEE 405 a 1 HETATM 30 N N PEE . . . JA 14 134.314 119.058 157.436 1 28.78 ? N PEE 405 a 1 HETATM 31 C C3 PEE . . . JA 14 133.568 120.934 162.833 1 28.78 ? C3 PEE 405 a 1 HETATM 32 O O3 PEE . . . JA 14 132.613 121.368 163.814 1 28.78 ? O3 PEE 405 a 1 HETATM 33 C C30 PEE . . . JA 14 133.055 121.418 165.045 1 28.78 ? C30 PEE 405 a 1 HETATM 34 O O5 PEE . . . JA 14 133.5 120.466 165.581 1 28.78 ? O5 PEE 405 a 1 HETATM 35 C C31 PEE . . . JA 14 132.925 122.783 165.63 1 28.78 ? C31 PEE 405 a 1 HETATM 36 C C32 PEE . . . JA 14 132.674 122.746 167.078 1 28.78 ? C32 PEE 405 a 1 HETATM 37 C C33 PEE . . . JA 14 133.874 123.149 167.888 1 28.78 ? C33 PEE 405 a 1 HETATM 38 C C34 PEE . . . JA 14 134.038 122.373 169.154 1 28.78 ? C34 PEE 405 a 1 HETATM 39 C C35 PEE . . . JA 14 134.283 123.225 170.361 1 28.78 ? C35 PEE 405 a 1 HETATM 40 C C36 PEE . . . JA 14 135.001 122.542 171.521 1 28.78 ? C36 PEE 405 a 1 HETATM 41 C C37 PEE . . . JA 14 136.441 122.938 171.69 1 28.78 ? C37 PEE 405 a 1 HETATM 42 C C38 PEE . . . JA 14 136.874 123.094 173.115 1 28.78 ? C38 PEE 405 a 1 HETATM 43 C C39 PEE . . . JA 14 137.543 124.121 173.602 1 28.78 ? C39 PEE 405 a 1 HETATM 44 C C40 PEE . . . JA 14 138.586 124.091 174.679 1 28.78 ? C40 PEE 405 a 1 HETATM 45 C C41 PEE . . . JA 14 139.499 125.292 174.679 1 28.78 ? C41 PEE 405 a 1 HETATM 46 C C42 PEE . . . JA 14 140.286 125.527 175.96 1 28.78 ? C42 PEE 405 a 1 HETATM 47 C C43 PEE . . . JA 14 141.615 124.788 176.042 1 28.78 ? C43 PEE 405 a 1 HETATM 48 C C44 PEE . . . JA 14 142.24 124.697 177.43 1 28.78 ? C44 PEE 405 a 1 HETATM 49 C C45 PEE . . . JA 14 143.716 124.36 177.447 1 28.78 ? C45 PEE 405 a 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 49 #