data_8ZQO # _model_server_result.job_id rbqJ9B33JPBZ3kLv5i1qUw _model_server_result.datetime_utc '2025-01-07 15:18:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 8ZQO # _exptl.entry_id 8ZQO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 414.538 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZQO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 518 NAG 2 n B NAG 2 B 2 NAG A 519 NAG 2 n B BMA 3 B 3 BMA A 520 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 301 A ASN 301 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A O ALA 60 A ALA 60 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 A O VAL 63 A VAL 63 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc3 A OD1 ASP 188 A ASP 188 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc4 A OD2 ASP 188 A ASP 188 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 A O ALA 343 A ALA 343 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc6 A OG SER 346 A SER 346 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc7 A O SER 346 A SER 346 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc8 A OG SER 347 A SER 347 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc9 A OD1 ASP 349 A ASP 349 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc10 A OG SER 350 A SER 350 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C24 H34 N2 O4 2' _chem_comp.formula_weight 414.538 _chem_comp.id HC6 _chem_comp.mon_nstd_flag . _chem_comp.name "(2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC NAA HC6 sing 153 n n CAC CAD HC6 sing 154 n n CAC HAC HC6 sing 155 n n CAC HACA HC6 sing 156 n n NAA CBA HC6 sing 157 n n NAA CBB HC6 sing 158 n n NAA CAB HC6 sing 159 n n CBA HBA HC6 sing 160 n n CBA HBAA HC6 sing 161 n n CBA HBAB HC6 sing 162 n n CBB HBB HC6 sing 163 n n CBB HBBA HC6 sing 164 n n CBB HBBB HC6 sing 165 n n CAB CAF HC6 sing 166 n n CAB HAB HC6 sing 167 n n CAB HABA HC6 sing 168 n n CAF OAE HC6 sing 169 n n CAF HAF HC6 sing 170 n n CAF HAFA HC6 sing 171 n n OAE CAD HC6 sing 172 n n CAD OBC HC6 sing 173 n n CAD CAG HC6 sing 174 n n CAG CAL HC6 doub 175 n y CAG CAH HC6 sing 176 n y CAL CAK HC6 sing 177 n y CAL HAL HC6 sing 178 n n CAK CAJ HC6 doub 179 n y CAK HAK HC6 sing 180 n n CAH CAI HC6 doub 181 n y CAH HAH HC6 sing 182 n n CAI CAJ HC6 sing 183 n y CAI HAI HC6 sing 184 n n CAJ CAM HC6 sing 185 n y CAM CAR HC6 doub 186 n y CAM CAN HC6 sing 187 n y CAR CAQ HC6 sing 188 n y CAR HAR HC6 sing 189 n n CAQ CAP HC6 doub 190 n y CAQ HAQ HC6 sing 191 n n CAN CAO HC6 doub 192 n y CAN HAN HC6 sing 193 n n CAO CAP HC6 sing 194 n y CAO HAO HC6 sing 195 n n CAP CAS HC6 sing 196 n n OBD CAS HC6 sing 197 n n CAS CAX HC6 sing 198 n n CAS OAT HC6 sing 199 n n CAX NAW HC6 sing 200 n n CAX HAX HC6 sing 201 n n CAX HAXA HC6 sing 202 n n OAT CAU HC6 sing 203 n n CAU CAV HC6 sing 204 n n CAU HAU HC6 sing 205 n n CAU HAUA HC6 sing 206 n n CAV NAW HC6 sing 207 n n CAV HAV HC6 sing 208 n n CAV HAVA HC6 sing 209 n n NAW CAZ HC6 sing 210 n n NAW CAY HC6 sing 211 n n CAZ HAZ HC6 sing 212 n n CAZ HAZA HC6 sing 213 n n CAZ HAZB HC6 sing 214 n n CAY HAY HC6 sing 215 n n CAY HAYA HC6 sing 216 n n CAY HAYB HC6 sing 217 n n OBC H33 HC6 sing 218 n n OBD H34 HC6 sing 219 n n # _atom_sites.entry_id 8ZQO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 601 3 NA NA . D 3 NA A 1 602 4 NA NA . E 4 HC6 A 1 603 521 HC6 HC6 . F 5 CL A 1 604 1 CL CL . G 6 HOH A 1 701 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC HC6 . . . E 4 106.406 111.491 112.478 1 33.07 ? CAC HC6 603 A 1 HETATM 2 N NAA HC6 . . . E 4 107.619 110.898 111.712 1 39.76 ? NAA HC6 603 A 1 HETATM 3 C CBA HC6 . . . E 4 108.09 111.882 110.694 1 35.39 ? CBA HC6 603 A 1 HETATM 4 C CBB HC6 . . . E 4 108.702 110.668 112.695 1 38.52 ? CBB HC6 603 A 1 HETATM 5 C CAB HC6 . . . E 4 107.378 109.576 110.958 1 23.33 ? CAB HC6 603 A 1 HETATM 6 C CAF HC6 . . . E 4 106.181 108.748 111.517 1 36.74 ? CAF HC6 603 A 1 HETATM 7 O OAE HC6 . . . E 4 105.439 109.41 112.549 1 50.67 ? OAE HC6 603 A 1 HETATM 8 C CAD HC6 . . . E 4 105.13 110.69 112.196 1 33.08 ? CAD HC6 603 A 1 HETATM 9 O OBC HC6 . . . E 4 104.881 110.7 110.833 1 35.8 ? OBC HC6 603 A 1 HETATM 10 C CAG HC6 . . . E 4 103.883 111.291 112.854 1 23.12 ? CAG HC6 603 A 1 HETATM 11 C CAL HC6 . . . E 4 103.616 111.465 114.195 1 33 ? CAL HC6 603 A 1 HETATM 12 C CAK HC6 . . . E 4 102.393 112.042 114.59 1 34.47 ? CAK HC6 603 A 1 HETATM 13 C CAH HC6 . . . E 4 102.938 111.681 111.956 1 30.12 ? CAH HC6 603 A 1 HETATM 14 C CAI HC6 . . . E 4 101.758 112.233 112.31 1 29.73 ? CAI HC6 603 A 1 HETATM 15 C CAJ HC6 . . . E 4 101.462 112.453 113.629 1 35.3 ? CAJ HC6 603 A 1 HETATM 16 C CAM HC6 . . . E 4 100.181 112.993 113.829 1 35.73 ? CAM HC6 603 A 1 HETATM 17 C CAR HC6 . . . E 4 99.429 112.656 114.938 1 37.16 ? CAR HC6 603 A 1 HETATM 18 C CAQ HC6 . . . E 4 98.142 113.129 115.074 1 34.76 ? CAQ HC6 603 A 1 HETATM 19 C CAN HC6 . . . E 4 99.575 113.775 112.851 1 38.49 ? CAN HC6 603 A 1 HETATM 20 C CAO HC6 . . . E 4 98.286 114.252 113.004 1 31.85 ? CAO HC6 603 A 1 HETATM 21 C CAP HC6 . . . E 4 97.557 113.937 114.111 1 32.11 ? CAP HC6 603 A 1 HETATM 22 C CAS HC6 . . . E 4 96.138 114.417 114.329 1 40.19 ? CAS HC6 603 A 1 HETATM 23 O OBD HC6 . . . E 4 96.063 115.602 115.064 1 46.54 ? OBD HC6 603 A 1 HETATM 24 C CAX HC6 . . . E 4 95.313 114.538 113.029 1 34.68 ? CAX HC6 603 A 1 HETATM 25 O OAT HC6 . . . E 4 95.507 113.439 115.078 1 41.86 ? OAT HC6 603 A 1 HETATM 26 C CAU HC6 . . . E 4 94.19 113.719 115.462 1 40.43 ? CAU HC6 603 A 1 HETATM 27 C CAV HC6 . . . E 4 93.259 113.774 114.284 1 38.43 ? CAV HC6 603 A 1 HETATM 28 N NAW HC6 . . . E 4 93.801 114.688 113.245 1 44.7 ? NAW HC6 603 A 1 HETATM 29 C CAZ HC6 . . . E 4 93.481 116.125 113.522 1 36.02 ? CAZ HC6 603 A 1 HETATM 30 C CAY HC6 . . . E 4 93.017 114.296 112.016 1 35.41 ? CAY HC6 603 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #