data_8ZVA # _model_server_result.job_id 8MvRwiDAVz9wOZm9_gnVfQ _model_server_result.datetime_utc '2025-07-20 18:22:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8ZVA # _exptl.entry_id 8ZVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZVA _cell.length_a 70.029 _cell.length_b 70.029 _cell.length_c 120.323 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,3 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -60.1615 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8ZVA _atom_sites.fract_transf_matrix[1][1] 0.01428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 2 GOL A 1 402 501 GOL GOL . D 3 CL A 1 403 1 CL CL . E 4 HOH A 1 501 2 HOH HOH . E 4 HOH A 2 502 26 HOH HOH . E 4 HOH A 3 503 52 HOH HOH . E 4 HOH A 4 504 27 HOH HOH . E 4 HOH A 5 505 43 HOH HOH . E 4 HOH A 6 506 11 HOH HOH . E 4 HOH A 7 507 4 HOH HOH . E 4 HOH A 8 508 30 HOH HOH . E 4 HOH A 9 509 14 HOH HOH . E 4 HOH A 10 510 7 HOH HOH . E 4 HOH A 11 511 24 HOH HOH . E 4 HOH A 12 512 20 HOH HOH . E 4 HOH A 13 513 21 HOH HOH . E 4 HOH A 14 514 56 HOH HOH . E 4 HOH A 15 515 32 HOH HOH . E 4 HOH A 16 516 19 HOH HOH . E 4 HOH A 17 517 54 HOH HOH . E 4 HOH A 18 518 37 HOH HOH . E 4 HOH A 19 519 42 HOH HOH . E 4 HOH A 20 520 1 HOH HOH . E 4 HOH A 21 521 22 HOH HOH . E 4 HOH A 22 522 10 HOH HOH . E 4 HOH A 23 523 15 HOH HOH . E 4 HOH A 24 524 13 HOH HOH . E 4 HOH A 25 525 23 HOH HOH . E 4 HOH A 26 526 57 HOH HOH . E 4 HOH A 27 527 47 HOH HOH . E 4 HOH A 28 528 16 HOH HOH . E 4 HOH A 29 529 8 HOH HOH . E 4 HOH A 30 530 6 HOH HOH . E 4 HOH A 31 531 48 HOH HOH . E 4 HOH A 32 532 60 HOH HOH . E 4 HOH A 33 533 5 HOH HOH . E 4 HOH A 34 534 63 HOH HOH . E 4 HOH A 35 535 17 HOH HOH . E 4 HOH A 36 536 29 HOH HOH . E 4 HOH A 37 537 25 HOH HOH . E 4 HOH A 38 538 39 HOH HOH . E 4 HOH A 39 539 67 HOH HOH . E 4 HOH A 40 540 40 HOH HOH . E 4 HOH A 41 541 28 HOH HOH . E 4 HOH A 42 542 38 HOH HOH . E 4 HOH A 43 543 66 HOH HOH . E 4 HOH A 44 544 53 HOH HOH . E 4 HOH A 45 545 34 HOH HOH . E 4 HOH A 46 546 41 HOH HOH . E 4 HOH A 47 547 3 HOH HOH . E 4 HOH A 48 548 69 HOH HOH . E 4 HOH A 49 549 64 HOH HOH . E 4 HOH A 50 550 12 HOH HOH . E 4 HOH A 51 551 44 HOH HOH . E 4 HOH A 52 552 49 HOH HOH . E 4 HOH A 53 553 45 HOH HOH . E 4 HOH A 54 554 68 HOH HOH . E 4 HOH A 55 555 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 19.538 13.762 10.823 1 49.66 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 20.477 14.548 10.143 1 58.95 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 18.353 13.518 9.868 1 51.02 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 17.159 13.405 10.574 1 45.19 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 18.369 14.69 8.891 1 54.67 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 17.203 14.567 8.144 1 56.97 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . B 2 19.212 14.19 11.63 1 59.7 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . B 2 19.902 12.908 11.103 1 59.7 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . B 2 21.136 14.652 10.662 1 70.85 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . B 2 18.458 12.685 9.381 1 61.34 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . B 2 17.338 13.059 11.331 1 54.35 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . B 2 19.179 14.652 8.359 1 65.71 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . B 2 18.427 15.521 9.388 1 65.71 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . B 2 17.366 14.875 7.372 1 68.48 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #