data_8ZVM
#
_model_server_result.job_id            2hEgXNqAH52e6wfeMjwDUQ 
_model_server_result.datetime_utc      '2025-06-19 07:42:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zvm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    8ZVM 
#
_exptl.entry_id    8ZVM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              767.534 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         101.72 
_cell.angle_beta          98.66 
_cell.angle_gamma         116.55 
_cell.entry_id            8ZVM 
_cell.length_a            58.213 
_cell.length_b            59.819 
_cell.length_c            73.241 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZVM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S' 
_chem_comp.formula_weight    767.534 
_chem_comp.id                COA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COA sing 76 n y 
N1A C6A COA doub 77 n y 
C2A N3A COA doub 78 n y 
C2A H2A COA sing 79 n n 
N3A C4A COA sing 80 n y 
C4A C5A COA doub 81 n y 
C4A N9A COA sing 82 n y 
C5A C6A COA sing 83 n y 
C5A N7A COA sing 84 n y 
C6A N6A COA sing 85 n n 
N6A H61A COA sing 86 n n 
N6A H62A COA sing 87 n n 
N7A C8A COA doub 88 n y 
C8A N9A COA sing 89 n y 
C8A H8A COA sing 90 n n 
N9A C1B COA sing 91 n n 
C1B C2B COA sing 92 n n 
C1B O4B COA sing 93 n n 
C1B H1B COA sing 94 n n 
C2B O2B COA sing 95 n n 
C2B C3B COA sing 96 n n 
C2B H2B COA sing 97 n n 
O2B HO2A COA sing 98 n n 
C3B O3B COA sing 99 n n 
C3B C4B COA sing 100 n n 
C3B H3B COA sing 101 n n 
O3B P3B COA sing 102 n n 
P3B O7A COA doub 103 n n 
P3B O8A COA sing 104 n n 
P3B O9A COA sing 105 n n 
O8A HOA8 COA sing 106 n n 
O9A HOA9 COA sing 107 n n 
C4B O4B COA sing 108 n n 
C4B C5B COA sing 109 n n 
C4B H4B COA sing 110 n n 
C5B O5B COA sing 111 n n 
C5B H51A COA sing 112 n n 
C5B H52A COA sing 113 n n 
O5B P1A COA sing 114 n n 
P1A O1A COA doub 115 n n 
P1A O2A COA sing 116 n n 
P1A O3A COA sing 117 n n 
O2A HOA2 COA sing 118 n n 
O3A P2A COA sing 119 n n 
P2A O4A COA doub 120 n n 
P2A O5A COA sing 121 n n 
P2A O6A COA sing 122 n n 
O5A HOA5 COA sing 123 n n 
O6A CCP COA sing 124 n n 
CBP CCP COA sing 125 n n 
CBP CDP COA sing 126 n n 
CBP CEP COA sing 127 n n 
CBP CAP COA sing 128 n n 
CCP H121 COA sing 129 n n 
CCP H122 COA sing 130 n n 
CDP H131 COA sing 131 n n 
CDP H132 COA sing 132 n n 
CDP H133 COA sing 133 n n 
CEP H141 COA sing 134 n n 
CEP H142 COA sing 135 n n 
CEP H143 COA sing 136 n n 
CAP OAP COA sing 137 n n 
CAP C9P COA sing 138 n n 
CAP H10 COA sing 139 n n 
OAP HO1 COA sing 140 n n 
C9P O9P COA doub 141 n n 
C9P N8P COA sing 142 n n 
N8P C7P COA sing 143 n n 
N8P HN8 COA sing 144 n n 
C7P C6P COA sing 145 n n 
C7P H71 COA sing 146 n n 
C7P H72 COA sing 147 n n 
C6P C5P COA sing 148 n n 
C6P H61 COA sing 149 n n 
C6P H62 COA sing 150 n n 
C5P O5P COA doub 151 n n 
C5P N4P COA sing 152 n n 
N4P C3P COA sing 153 n n 
N4P HN4 COA sing 154 n n 
C3P C2P COA sing 155 n n 
C3P H31 COA sing 156 n n 
C3P H32 COA sing 157 n n 
C2P S1P COA sing 158 n n 
C2P H21 COA sing 159 n n 
C2P H22 COA sing 160 n n 
S1P HS1 COA sing 161 n n 
#
_atom_sites.entry_id                     8ZVM 
_atom_sites.fract_transf_matrix[1][1]    0.017178 
_atom_sites.fract_transf_matrix[1][2]    0.008584 
_atom_sites.fract_transf_matrix[1][3]    0.005504 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018688 
_atom_sites.fract_transf_matrix[2][3]    0.006001 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OAA A 1 501 501 OAA OAA . 
D 3 ACE A 1 502 502 ACE ACE . 
E 4 COA A 1 503 502 COA COA . 
F 5 HOH A 1 601 24 HOH HOH . 
F 5 HOH A 2 602 70 HOH HOH . 
F 5 HOH A 3 603 10 HOH HOH . 
F 5 HOH A 4 604 33 HOH HOH . 
F 5 HOH A 5 605 85 HOH HOH . 
F 5 HOH A 6 606 23 HOH HOH . 
F 5 HOH A 7 607 5 HOH HOH . 
F 5 HOH A 8 608 72 HOH HOH . 
F 5 HOH A 9 609 150 HOH HOH . 
F 5 HOH A 10 610 80 HOH HOH . 
F 5 HOH A 11 611 36 HOH HOH . 
F 5 HOH A 12 612 4 HOH HOH . 
F 5 HOH A 13 613 79 HOH HOH . 
F 5 HOH A 14 614 112 HOH HOH . 
F 5 HOH A 15 615 54 HOH HOH . 
F 5 HOH A 16 616 88 HOH HOH . 
F 5 HOH A 17 617 151 HOH HOH . 
F 5 HOH A 18 618 13 HOH HOH . 
F 5 HOH A 19 619 6 HOH HOH . 
F 5 HOH A 20 620 28 HOH HOH . 
F 5 HOH A 21 621 98 HOH HOH . 
F 5 HOH A 22 622 21 HOH HOH . 
F 5 HOH A 23 623 106 HOH HOH . 
F 5 HOH A 24 624 11 HOH HOH . 
F 5 HOH A 25 625 25 HOH HOH . 
F 5 HOH A 26 626 82 HOH HOH . 
F 5 HOH A 27 627 8 HOH HOH . 
F 5 HOH A 28 628 83 HOH HOH . 
F 5 HOH A 29 629 93 HOH HOH . 
F 5 HOH A 30 630 141 HOH HOH . 
F 5 HOH A 31 631 76 HOH HOH . 
F 5 HOH A 32 632 29 HOH HOH . 
F 5 HOH A 33 633 32 HOH HOH . 
F 5 HOH A 34 634 139 HOH HOH . 
F 5 HOH A 35 635 59 HOH HOH . 
F 5 HOH A 36 636 165 HOH HOH . 
F 5 HOH A 37 637 48 HOH HOH . 
F 5 HOH A 38 638 153 HOH HOH . 
F 5 HOH A 39 639 99 HOH HOH . 
F 5 HOH A 40 640 22 HOH HOH . 
F 5 HOH A 41 641 26 HOH HOH . 
F 5 HOH A 42 642 173 HOH HOH . 
F 5 HOH A 43 643 161 HOH HOH . 
F 5 HOH A 44 644 110 HOH HOH . 
F 5 HOH A 45 645 2 HOH HOH . 
F 5 HOH A 46 646 65 HOH HOH . 
F 5 HOH A 47 647 35 HOH HOH . 
F 5 HOH A 48 648 67 HOH HOH . 
F 5 HOH A 49 649 9 HOH HOH . 
F 5 HOH A 50 650 53 HOH HOH . 
F 5 HOH A 51 651 7 HOH HOH . 
F 5 HOH A 52 652 155 HOH HOH . 
F 5 HOH A 53 653 51 HOH HOH . 
F 5 HOH A 54 654 57 HOH HOH . 
F 5 HOH A 55 655 115 HOH HOH . 
F 5 HOH A 56 656 84 HOH HOH . 
F 5 HOH A 57 657 90 HOH HOH . 
F 5 HOH A 58 658 44 HOH HOH . 
F 5 HOH A 59 659 87 HOH HOH . 
F 5 HOH A 60 660 75 HOH HOH . 
F 5 HOH A 61 661 157 HOH HOH . 
F 5 HOH A 62 662 121 HOH HOH . 
F 5 HOH A 63 663 60 HOH HOH . 
F 5 HOH A 64 664 113 HOH HOH . 
F 5 HOH A 65 665 167 HOH HOH . 
F 5 HOH A 66 666 55 HOH HOH . 
F 5 HOH A 67 667 105 HOH HOH . 
F 5 HOH A 68 668 120 HOH HOH . 
G 5 HOH B 1 501 19 HOH HOH . 
G 5 HOH B 2 502 119 HOH HOH . 
G 5 HOH B 3 503 27 HOH HOH . 
G 5 HOH B 4 504 20 HOH HOH . 
G 5 HOH B 5 505 18 HOH HOH . 
G 5 HOH B 6 506 156 HOH HOH . 
G 5 HOH B 7 507 138 HOH HOH . 
G 5 HOH B 8 508 160 HOH HOH . 
G 5 HOH B 9 509 43 HOH HOH . 
G 5 HOH B 10 510 3 HOH HOH . 
G 5 HOH B 11 511 148 HOH HOH . 
G 5 HOH B 12 512 78 HOH HOH . 
G 5 HOH B 13 513 45 HOH HOH . 
G 5 HOH B 14 514 40 HOH HOH . 
G 5 HOH B 15 515 71 HOH HOH . 
G 5 HOH B 16 516 127 HOH HOH . 
G 5 HOH B 17 517 62 HOH HOH . 
G 5 HOH B 18 518 16 HOH HOH . 
G 5 HOH B 19 519 162 HOH HOH . 
G 5 HOH B 20 520 123 HOH HOH . 
G 5 HOH B 21 521 128 HOH HOH . 
G 5 HOH B 22 522 100 HOH HOH . 
G 5 HOH B 23 523 95 HOH HOH . 
G 5 HOH B 24 524 129 HOH HOH . 
G 5 HOH B 25 525 130 HOH HOH . 
G 5 HOH B 26 526 14 HOH HOH . 
G 5 HOH B 27 527 176 HOH HOH . 
G 5 HOH B 28 528 1 HOH HOH . 
G 5 HOH B 29 529 137 HOH HOH . 
G 5 HOH B 30 530 174 HOH HOH . 
G 5 HOH B 31 531 94 HOH HOH . 
G 5 HOH B 32 532 49 HOH HOH . 
G 5 HOH B 33 533 134 HOH HOH . 
G 5 HOH B 34 534 152 HOH HOH . 
G 5 HOH B 35 535 118 HOH HOH . 
G 5 HOH B 36 536 101 HOH HOH . 
G 5 HOH B 37 537 109 HOH HOH . 
G 5 HOH B 38 538 58 HOH HOH . 
G 5 HOH B 39 539 30 HOH HOH . 
G 5 HOH B 40 540 61 HOH HOH . 
G 5 HOH B 41 541 125 HOH HOH . 
G 5 HOH B 42 542 170 HOH HOH . 
G 5 HOH B 43 543 89 HOH HOH . 
G 5 HOH B 44 544 73 HOH HOH . 
G 5 HOH B 45 545 81 HOH HOH . 
G 5 HOH B 46 546 117 HOH HOH . 
G 5 HOH B 47 547 31 HOH HOH . 
G 5 HOH B 48 548 96 HOH HOH . 
G 5 HOH B 49 549 34 HOH HOH . 
G 5 HOH B 50 550 86 HOH HOH . 
G 5 HOH B 51 551 97 HOH HOH . 
G 5 HOH B 52 552 145 HOH HOH . 
G 5 HOH B 53 553 177 HOH HOH . 
G 5 HOH B 54 554 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COA . . . E 4 1.052 13.331 -19.889 1 77.89 ? N1A COA 503 A 1 
HETATM 2 C C2A COA . . . E 4 0.147 14.057 -19.217 1 76.88 ? C2A COA 503 A 1 
HETATM 3 N N3A COA . . . E 4 0.334 14.939 -18.239 1 76.96 ? N3A COA 503 A 1 
HETATM 4 C C4A COA . . . E 4 1.64 15.057 -17.95 1 74.95 ? C4A COA 503 A 1 
HETATM 5 C C5A COA . . . E 4 2.684 14.383 -18.545 1 73.76 ? C5A COA 503 A 1 
HETATM 6 C C6A COA . . . E 4 2.362 13.474 -19.573 1 74.79 ? C6A COA 503 A 1 
HETATM 7 N N6A COA . . . E 4 3.262 12.751 -20.234 1 75.56 ? N6A COA 503 A 1 
HETATM 8 N N7A COA . . . E 4 3.889 14.773 -17.975 1 74.69 ? N7A COA 503 A 1 
HETATM 9 C C8A COA . . . E 4 3.557 15.654 -17.06 1 75.72 ? C8A COA 503 A 1 
HETATM 10 N N9A COA . . . E 4 2.203 15.865 -16.999 1 75.46 ? N9A COA 503 A 1 
HETATM 11 C C1B COA . . . E 4 1.472 16.768 -16.112 1 78.57 ? C1B COA 503 A 1 
HETATM 12 C C2B COA . . . E 4 1.697 16.58 -14.616 1 78.46 ? C2B COA 503 A 1 
HETATM 13 O O2B COA . . . E 4 1.037 15.452 -14.082 1 80.63 ? O2B COA 503 A 1 
HETATM 14 C C3B COA . . . E 4 1.096 17.895 -14.125 1 77.23 ? C3B COA 503 A 1 
HETATM 15 O O3B COA . . . E 4 -0.324 17.785 -14.192 1 78.08 ? O3B COA 503 A 1 
HETATM 16 P P3B COA . . . E 4 -1.178 18.713 -13.185 1 79.05 ? P3B COA 503 A 1 
HETATM 17 O O7A COA . . . E 4 -1.517 17.838 -11.983 1 72.71 ? O7A COA 503 A 1 
HETATM 18 O O8A COA . . . E 4 -2.41 19.098 -13.986 1 75.36 ? O8A COA 503 A 1 
HETATM 19 O O9A COA . . . E 4 -0.345 19.921 -12.802 1 75.71 ? O9A COA 503 A 1 
HETATM 20 C C4B COA . . . E 4 1.605 18.889 -15.17 1 81.2 ? C4B COA 503 A 1 
HETATM 21 O O4B COA . . . E 4 1.9 18.088 -16.347 1 82.16 ? O4B COA 503 A 1 
HETATM 22 C C5B COA . . . E 4 2.825 19.697 -14.79 1 82.38 ? C5B COA 503 A 1 
HETATM 23 O O5B COA . . . E 4 3.609 18.985 -13.792 1 81.65 ? O5B COA 503 A 1 
HETATM 24 P P1A COA . . . E 4 5.159 18.654 -14.049 1 71.37 ? P1A COA 503 A 1 
HETATM 25 O O1A COA . . . E 4 6.016 19.643 -13.329 1 70.71 ? O1A COA 503 A 1 
HETATM 26 O O2A COA . . . E 4 5.381 18.444 -15.507 1 69.52 ? O2A COA 503 A 1 
HETATM 27 O O3A COA . . . E 4 5.261 17.245 -13.292 1 75.67 ? O3A COA 503 A 1 
HETATM 28 P P2A COA . . . E 4 6.336 16.561 -12.317 1 72.37 ? P2A COA 503 A 1 
HETATM 29 O O4A COA . . . E 4 7.683 17.157 -12.57 1 76.63 ? O4A COA 503 A 1 
HETATM 30 O O5A COA . . . E 4 5.803 16.597 -10.924 1 66.16 ? O5A COA 503 A 1 
HETATM 31 O O6A COA . . . E 4 6.279 15.045 -12.864 1 70.92 ? O6A COA 503 A 1 
HETATM 32 C CBP COA . . . E 4 6.913 13.149 -14.288 1 57.75 ? CBP COA 503 A 1 
HETATM 33 C CCP COA . . . E 4 7.281 14.559 -13.816 1 62.08 ? CCP COA 503 A 1 
HETATM 34 C CDP COA . . . E 4 8.133 12.53 -14.981 1 60.63 ? CDP COA 503 A 1 
HETATM 35 C CEP COA . . . E 4 6.564 12.288 -13.067 1 58.27 ? CEP COA 503 A 1 
HETATM 36 C CAP COA . . . E 4 5.723 13.181 -15.265 1 53.15 ? CAP COA 503 A 1 
HETATM 37 O OAP COA . . . E 4 6.109 13.859 -16.453 1 44.98 ? OAP COA 503 A 1 
HETATM 38 C C9P COA . . . E 4 5.147 11.819 -15.641 1 54.1 ? C9P COA 503 A 1 
HETATM 39 O O9P COA . . . E 4 4.27 11.316 -14.942 1 48.8 ? O9P COA 503 A 1 
HETATM 40 N N8P COA . . . E 4 5.604 11.243 -16.749 1 55.07 ? N8P COA 503 A 1 
HETATM 41 C C7P COA . . . E 4 5.104 9.971 -17.262 1 54.43 ? C7P COA 503 A 1 
HETATM 42 C C6P COA . . . E 4 5.783 8.776 -16.625 1 53.43 ? C6P COA 503 A 1 
HETATM 43 C C5P COA . . . E 4 7.251 8.676 -16.982 1 51.51 ? C5P COA 503 A 1 
HETATM 44 O O5P COA . . . E 4 7.612 8.736 -18.157 1 47.92 ? O5P COA 503 A 1 
HETATM 45 N N4P COA . . . E 4 8.125 8.537 -15.973 1 51.5 ? N4P COA 503 A 1 
HETATM 46 C C3P COA . . . E 4 9.548 8.283 -16.163 1 55.1 ? C3P COA 503 A 1 
HETATM 47 C C2P COA . . . E 4 10.407 9.489 -15.864 1 58.65 ? C2P COA 503 A 1 
HETATM 48 S S1P COA . . . E 4 11.132 9.445 -14.205 1 67.1 ? S1P COA 503 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#