data_8ZVT # _model_server_result.job_id Cj4i029ZWdm5UMOPwrqG0A _model_server_result.datetime_utc '2025-06-19 17:05:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8ZVT # _exptl.entry_id 8ZVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZVT _cell.length_a 57.84 _cell.length_b 57.84 _cell.length_c 250.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0 1 0 1 0 0 0 0 -1 57.84 -57.84 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 77 n y N1A C6A COA doub 78 n y C2A N3A COA doub 79 n y C2A H2A COA sing 80 n n N3A C4A COA sing 81 n y C4A C5A COA doub 82 n y C4A N9A COA sing 83 n y C5A C6A COA sing 84 n y C5A N7A COA sing 85 n y C6A N6A COA sing 86 n n N6A H61A COA sing 87 n n N6A H62A COA sing 88 n n N7A C8A COA doub 89 n y C8A N9A COA sing 90 n y C8A H8A COA sing 91 n n N9A C1B COA sing 92 n n C1B C2B COA sing 93 n n C1B O4B COA sing 94 n n C1B H1B COA sing 95 n n C2B O2B COA sing 96 n n C2B C3B COA sing 97 n n C2B H2B COA sing 98 n n O2B HO2A COA sing 99 n n C3B O3B COA sing 100 n n C3B C4B COA sing 101 n n C3B H3B COA sing 102 n n O3B P3B COA sing 103 n n P3B O7A COA doub 104 n n P3B O8A COA sing 105 n n P3B O9A COA sing 106 n n O8A HOA8 COA sing 107 n n O9A HOA9 COA sing 108 n n C4B O4B COA sing 109 n n C4B C5B COA sing 110 n n C4B H4B COA sing 111 n n C5B O5B COA sing 112 n n C5B H51A COA sing 113 n n C5B H52A COA sing 114 n n O5B P1A COA sing 115 n n P1A O1A COA doub 116 n n P1A O2A COA sing 117 n n P1A O3A COA sing 118 n n O2A HOA2 COA sing 119 n n O3A P2A COA sing 120 n n P2A O4A COA doub 121 n n P2A O5A COA sing 122 n n P2A O6A COA sing 123 n n O5A HOA5 COA sing 124 n n O6A CCP COA sing 125 n n CBP CCP COA sing 126 n n CBP CDP COA sing 127 n n CBP CEP COA sing 128 n n CBP CAP COA sing 129 n n CCP H121 COA sing 130 n n CCP H122 COA sing 131 n n CDP H131 COA sing 132 n n CDP H132 COA sing 133 n n CDP H133 COA sing 134 n n CEP H141 COA sing 135 n n CEP H142 COA sing 136 n n CEP H143 COA sing 137 n n CAP OAP COA sing 138 n n CAP C9P COA sing 139 n n CAP H10 COA sing 140 n n OAP HO1 COA sing 141 n n C9P O9P COA doub 142 n n C9P N8P COA sing 143 n n N8P C7P COA sing 144 n n N8P HN8 COA sing 145 n n C7P C6P COA sing 146 n n C7P H71 COA sing 147 n n C7P H72 COA sing 148 n n C6P C5P COA sing 149 n n C6P H61 COA sing 150 n n C6P H62 COA sing 151 n n C5P O5P COA doub 152 n n C5P N4P COA sing 153 n n N4P C3P COA sing 154 n n N4P HN4 COA sing 155 n n C3P C2P COA sing 156 n n C3P H31 COA sing 157 n n C3P H32 COA sing 158 n n C2P S1P COA sing 159 n n C2P H21 COA sing 160 n n C2P H22 COA sing 161 n n S1P HS1 COA sing 162 n n # _atom_sites.entry_id 8ZVT _atom_sites.fract_transf_matrix[1][1] 0.017289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAA A 1 501 501 OAA OAA . C 3 ACY A 1 502 502 ACY ACY . D 4 COA A 1 503 502 COA COA . E 5 HOH A 1 601 200 HOH HOH . E 5 HOH A 2 602 183 HOH HOH . E 5 HOH A 3 603 22 HOH HOH . E 5 HOH A 4 604 15 HOH HOH . E 5 HOH A 5 605 4 HOH HOH . E 5 HOH A 6 606 80 HOH HOH . E 5 HOH A 7 607 126 HOH HOH . E 5 HOH A 8 608 56 HOH HOH . E 5 HOH A 9 609 199 HOH HOH . E 5 HOH A 10 610 191 HOH HOH . E 5 HOH A 11 611 106 HOH HOH . E 5 HOH A 12 612 5 HOH HOH . E 5 HOH A 13 613 20 HOH HOH . E 5 HOH A 14 614 109 HOH HOH . E 5 HOH A 15 615 141 HOH HOH . E 5 HOH A 16 616 76 HOH HOH . E 5 HOH A 17 617 3 HOH HOH . E 5 HOH A 18 618 113 HOH HOH . E 5 HOH A 19 619 108 HOH HOH . E 5 HOH A 20 620 30 HOH HOH . E 5 HOH A 21 621 49 HOH HOH . E 5 HOH A 22 622 10 HOH HOH . E 5 HOH A 23 623 195 HOH HOH . E 5 HOH A 24 624 52 HOH HOH . E 5 HOH A 25 625 144 HOH HOH . E 5 HOH A 26 626 18 HOH HOH . E 5 HOH A 27 627 58 HOH HOH . E 5 HOH A 28 628 92 HOH HOH . E 5 HOH A 29 629 163 HOH HOH . E 5 HOH A 30 630 149 HOH HOH . E 5 HOH A 31 631 44 HOH HOH . E 5 HOH A 32 632 139 HOH HOH . E 5 HOH A 33 633 97 HOH HOH . E 5 HOH A 34 634 112 HOH HOH . E 5 HOH A 35 635 40 HOH HOH . E 5 HOH A 36 636 62 HOH HOH . E 5 HOH A 37 637 132 HOH HOH . E 5 HOH A 38 638 74 HOH HOH . E 5 HOH A 39 639 135 HOH HOH . E 5 HOH A 40 640 86 HOH HOH . E 5 HOH A 41 641 150 HOH HOH . E 5 HOH A 42 642 93 HOH HOH . E 5 HOH A 43 643 37 HOH HOH . E 5 HOH A 44 644 85 HOH HOH . E 5 HOH A 45 645 31 HOH HOH . E 5 HOH A 46 646 148 HOH HOH . E 5 HOH A 47 647 90 HOH HOH . E 5 HOH A 48 648 13 HOH HOH . E 5 HOH A 49 649 100 HOH HOH . E 5 HOH A 50 650 129 HOH HOH . E 5 HOH A 51 651 63 HOH HOH . E 5 HOH A 52 652 55 HOH HOH . E 5 HOH A 53 653 29 HOH HOH . E 5 HOH A 54 654 182 HOH HOH . E 5 HOH A 55 655 66 HOH HOH . E 5 HOH A 56 656 61 HOH HOH . E 5 HOH A 57 657 23 HOH HOH . E 5 HOH A 58 658 8 HOH HOH . E 5 HOH A 59 659 53 HOH HOH . E 5 HOH A 60 660 41 HOH HOH . E 5 HOH A 61 661 152 HOH HOH . E 5 HOH A 62 662 65 HOH HOH . E 5 HOH A 63 663 194 HOH HOH . E 5 HOH A 64 664 12 HOH HOH . E 5 HOH A 65 665 6 HOH HOH . E 5 HOH A 66 666 116 HOH HOH . E 5 HOH A 67 667 38 HOH HOH . E 5 HOH A 68 668 95 HOH HOH . E 5 HOH A 69 669 24 HOH HOH . E 5 HOH A 70 670 164 HOH HOH . E 5 HOH A 71 671 17 HOH HOH . E 5 HOH A 72 672 143 HOH HOH . E 5 HOH A 73 673 27 HOH HOH . E 5 HOH A 74 674 114 HOH HOH . E 5 HOH A 75 675 9 HOH HOH . E 5 HOH A 76 676 170 HOH HOH . E 5 HOH A 77 677 78 HOH HOH . E 5 HOH A 78 678 16 HOH HOH . E 5 HOH A 79 679 45 HOH HOH . E 5 HOH A 80 680 162 HOH HOH . E 5 HOH A 81 681 50 HOH HOH . E 5 HOH A 82 682 57 HOH HOH . E 5 HOH A 83 683 110 HOH HOH . E 5 HOH A 84 684 26 HOH HOH . E 5 HOH A 85 685 167 HOH HOH . E 5 HOH A 86 686 127 HOH HOH . E 5 HOH A 87 687 105 HOH HOH . E 5 HOH A 88 688 42 HOH HOH . E 5 HOH A 89 689 72 HOH HOH . E 5 HOH A 90 690 25 HOH HOH . E 5 HOH A 91 691 28 HOH HOH . E 5 HOH A 92 692 91 HOH HOH . E 5 HOH A 93 693 11 HOH HOH . E 5 HOH A 94 694 145 HOH HOH . E 5 HOH A 95 695 73 HOH HOH . E 5 HOH A 96 696 46 HOH HOH . E 5 HOH A 97 697 59 HOH HOH . E 5 HOH A 98 698 96 HOH HOH . E 5 HOH A 99 699 19 HOH HOH . E 5 HOH A 100 700 176 HOH HOH . E 5 HOH A 101 701 32 HOH HOH . E 5 HOH A 102 702 146 HOH HOH . E 5 HOH A 103 703 34 HOH HOH . E 5 HOH A 104 704 111 HOH HOH . E 5 HOH A 105 705 47 HOH HOH . E 5 HOH A 106 706 79 HOH HOH . E 5 HOH A 107 707 68 HOH HOH . E 5 HOH A 108 708 43 HOH HOH . E 5 HOH A 109 709 134 HOH HOH . E 5 HOH A 110 710 2 HOH HOH . E 5 HOH A 111 711 39 HOH HOH . E 5 HOH A 112 712 142 HOH HOH . E 5 HOH A 113 713 21 HOH HOH . E 5 HOH A 114 714 130 HOH HOH . E 5 HOH A 115 715 84 HOH HOH . E 5 HOH A 116 716 154 HOH HOH . E 5 HOH A 117 717 157 HOH HOH . E 5 HOH A 118 718 172 HOH HOH . E 5 HOH A 119 719 89 HOH HOH . E 5 HOH A 120 720 159 HOH HOH . E 5 HOH A 121 721 169 HOH HOH . E 5 HOH A 122 722 69 HOH HOH . E 5 HOH A 123 723 187 HOH HOH . E 5 HOH A 124 724 103 HOH HOH . E 5 HOH A 125 725 14 HOH HOH . E 5 HOH A 126 726 98 HOH HOH . E 5 HOH A 127 727 120 HOH HOH . E 5 HOH A 128 728 136 HOH HOH . E 5 HOH A 129 729 138 HOH HOH . E 5 HOH A 130 730 82 HOH HOH . E 5 HOH A 131 731 156 HOH HOH . E 5 HOH A 132 732 158 HOH HOH . E 5 HOH A 133 733 48 HOH HOH . E 5 HOH A 134 734 161 HOH HOH . E 5 HOH A 135 735 122 HOH HOH . E 5 HOH A 136 736 190 HOH HOH . E 5 HOH A 137 737 192 HOH HOH . E 5 HOH A 138 738 197 HOH HOH . E 5 HOH A 139 739 188 HOH HOH . E 5 HOH A 140 740 185 HOH HOH . E 5 HOH A 141 741 124 HOH HOH . E 5 HOH A 142 742 196 HOH HOH . E 5 HOH A 143 743 186 HOH HOH . E 5 HOH A 144 744 131 HOH HOH . E 5 HOH A 145 745 75 HOH HOH . E 5 HOH A 146 746 189 HOH HOH . E 5 HOH A 147 747 198 HOH HOH . E 5 HOH A 148 748 107 HOH HOH . E 5 HOH A 149 749 104 HOH HOH . E 5 HOH A 150 750 193 HOH HOH . E 5 HOH A 151 751 151 HOH HOH . E 5 HOH A 152 752 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 4 30.645 -48.788 -21.486 1 58.32 ? N1A COA 503 A 1 HETATM 2 C C2A COA . . . D 4 30.94 -49.971 -20.929 1 54.25 ? C2A COA 503 A 1 HETATM 3 N N3A COA . . . D 4 30.31 -50.622 -19.956 1 53.09 ? N3A COA 503 A 1 HETATM 4 C C4A COA . . . D 4 29.233 -49.933 -19.545 1 57.53 ? C4A COA 503 A 1 HETATM 5 C C5A COA . . . D 4 28.799 -48.71 -20.012 1 59.74 ? C5A COA 503 A 1 HETATM 6 C C6A COA . . . D 4 29.561 -48.11 -21.034 1 57.54 ? C6A COA 503 A 1 HETATM 7 N N6A COA . . . D 4 29.261 -46.938 -21.582 1 56.22 ? N6A COA 503 A 1 HETATM 8 N N7A COA . . . D 4 27.645 -48.316 -19.341 1 58.01 ? N7A COA 503 A 1 HETATM 9 C C8A COA . . . D 4 27.426 -49.279 -18.476 1 57.88 ? C8A COA 503 A 1 HETATM 10 N N9A COA . . . D 4 28.359 -50.288 -18.555 1 54.89 ? N9A COA 503 A 1 HETATM 11 C C1B COA . . . D 4 28.425 -51.5 -17.759 1 55.07 ? C1B COA 503 A 1 HETATM 12 C C2B COA . . . D 4 28.566 -51.23 -16.267 1 60.89 ? C2B COA 503 A 1 HETATM 13 O O2B COA . . . D 4 29.876 -50.89 -15.867 1 52.43 ? O2B COA 503 A 1 HETATM 14 C C3B COA . . . D 4 28.082 -52.573 -15.724 1 63.48 ? C3B COA 503 A 1 HETATM 15 O O3B COA . . . D 4 29.084 -53.565 -15.934 1 71.05 ? O3B COA 503 A 1 HETATM 16 P P3B COA . . . D 4 29.38 -54.582 -14.729 1 76.57 ? P3B COA 503 A 1 HETATM 17 O O7A COA . . . D 4 29.609 -53.804 -13.426 1 60.28 ? O7A COA 503 A 1 HETATM 18 O O8A COA . . . D 4 30.622 -55.298 -15.199 1 67.22 ? O8A COA 503 A 1 HETATM 19 O O9A COA . . . D 4 28.194 -55.53 -14.653 1 82.12 ? O9A COA 503 A 1 HETATM 20 C C4B COA . . . D 4 26.899 -52.863 -16.635 1 58.31 ? C4B COA 503 A 1 HETATM 21 O O4B COA . . . D 4 27.207 -52.198 -17.886 1 56.74 ? O4B COA 503 A 1 HETATM 22 C C5B COA . . . D 4 25.543 -52.426 -16.14 1 60.67 ? C5B COA 503 A 1 HETATM 23 O O5B COA . . . D 4 25.642 -51.131 -15.496 1 60.08 ? O5B COA 503 A 1 HETATM 24 P P1A COA . . . D 4 24.41 -50.117 -15.678 1 55.51 ? P1A COA 503 A 1 HETATM 25 O O1A COA . . . D 4 23.433 -50.344 -14.572 1 58.91 ? O1A COA 503 A 1 HETATM 26 O O2A COA . . . D 4 23.942 -50.087 -17.085 1 39.25 ? O2A COA 503 A 1 HETATM 27 O O3A COA . . . D 4 25.137 -48.718 -15.448 1 58.03 ? O3A COA 503 A 1 HETATM 28 P P2A COA . . . D 4 25.091 -47.801 -14.156 1 63 ? P2A COA 503 A 1 HETATM 29 O O4A COA . . . D 4 23.699 -47.259 -14.072 1 74.87 ? O4A COA 503 A 1 HETATM 30 O O5A COA . . . D 4 25.694 -48.495 -12.981 1 51.18 ? O5A COA 503 A 1 HETATM 31 O O6A COA . . . D 4 26.132 -46.66 -14.583 1 56.99 ? O6A COA 503 A 1 HETATM 32 C CBP COA . . . D 4 27.003 -45.026 -16.074 1 46.42 ? CBP COA 503 A 1 HETATM 33 C CCP COA . . . D 4 25.724 -45.649 -15.537 1 47.75 ? CCP COA 503 A 1 HETATM 34 C CDP COA . . . D 4 26.679 -43.745 -16.855 1 42.63 ? CDP COA 503 A 1 HETATM 35 C CEP COA . . . D 4 27.905 -44.689 -14.88 1 47.1 ? CEP COA 503 A 1 HETATM 36 C CAP COA . . . D 4 27.698 -46.041 -16.987 1 41.16 ? CAP COA 503 A 1 HETATM 37 O OAP COA . . . D 4 26.929 -46.25 -18.154 1 38.89 ? OAP COA 503 A 1 HETATM 38 C C9P COA . . . D 4 29.082 -45.557 -17.372 1 39.52 ? C9P COA 503 A 1 HETATM 39 O O9P COA . . . D 4 30.041 -45.879 -16.671 1 39.56 ? O9P COA 503 A 1 HETATM 40 N N8P COA . . . D 4 29.177 -44.824 -18.475 1 36.78 ? N8P COA 503 A 1 HETATM 41 C C7P COA . . . D 4 30.412 -44.165 -18.887 1 38.2 ? C7P COA 503 A 1 HETATM 42 C C6P COA . . . D 4 30.675 -42.9 -18.075 1 36.99 ? C6P COA 503 A 1 HETATM 43 C C5P COA . . . D 4 29.694 -41.792 -18.418 1 34.08 ? C5P COA 503 A 1 HETATM 44 O O5P COA . . . D 4 29.443 -41.524 -19.6 1 29.85 ? O5P COA 503 A 1 HETATM 45 N N4P COA . . . D 4 29.144 -41.141 -17.376 1 31.88 ? N4P COA 503 A 1 HETATM 46 C C3P COA . . . D 4 28.383 -39.9 -17.471 1 43.35 ? C3P COA 503 A 1 HETATM 47 C C2P COA . . . D 4 26.918 -40.038 -17.031 1 52.6 ? C2P COA 503 A 1 HETATM 48 S S1P COA . . . D 4 26.646 -39.929 -15.237 1 58.54 ? S1P COA 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #