data_8ZVW # _model_server_result.job_id 9BkXh6bN7IYgpL8pePVKnQ _model_server_result.datetime_utc '2025-06-20 11:52:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8ZVW # _exptl.entry_id 8ZVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZVW _cell.length_a 57.37 _cell.length_b 57.37 _cell.length_c 250.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8ZVW _atom_sites.fract_transf_matrix[1][1] 0.017431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAA A 1 501 501 OAA OAA . C 3 COA A 1 502 502 COA COA . D 4 HOH A 1 601 75 HOH HOH . D 4 HOH A 2 602 6 HOH HOH . D 4 HOH A 3 603 25 HOH HOH . D 4 HOH A 4 604 53 HOH HOH . D 4 HOH A 5 605 7 HOH HOH . D 4 HOH A 6 606 60 HOH HOH . D 4 HOH A 7 607 5 HOH HOH . D 4 HOH A 8 608 33 HOH HOH . D 4 HOH A 9 609 38 HOH HOH . D 4 HOH A 10 610 130 HOH HOH . D 4 HOH A 11 611 39 HOH HOH . D 4 HOH A 12 612 102 HOH HOH . D 4 HOH A 13 613 21 HOH HOH . D 4 HOH A 14 614 146 HOH HOH . D 4 HOH A 15 615 31 HOH HOH . D 4 HOH A 16 616 4 HOH HOH . D 4 HOH A 17 617 52 HOH HOH . D 4 HOH A 18 618 11 HOH HOH . D 4 HOH A 19 619 45 HOH HOH . D 4 HOH A 20 620 50 HOH HOH . D 4 HOH A 21 621 30 HOH HOH . D 4 HOH A 22 622 85 HOH HOH . D 4 HOH A 23 623 2 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 127 HOH HOH . D 4 HOH A 26 626 110 HOH HOH . D 4 HOH A 27 627 47 HOH HOH . D 4 HOH A 28 628 152 HOH HOH . D 4 HOH A 29 629 108 HOH HOH . D 4 HOH A 30 630 29 HOH HOH . D 4 HOH A 31 631 16 HOH HOH . D 4 HOH A 32 632 1 HOH HOH . D 4 HOH A 33 633 118 HOH HOH . D 4 HOH A 34 634 26 HOH HOH . D 4 HOH A 35 635 12 HOH HOH . D 4 HOH A 36 636 69 HOH HOH . D 4 HOH A 37 637 84 HOH HOH . D 4 HOH A 38 638 35 HOH HOH . D 4 HOH A 39 639 141 HOH HOH . D 4 HOH A 40 640 41 HOH HOH . D 4 HOH A 41 641 88 HOH HOH . D 4 HOH A 42 642 3 HOH HOH . D 4 HOH A 43 643 36 HOH HOH . D 4 HOH A 44 644 71 HOH HOH . D 4 HOH A 45 645 67 HOH HOH . D 4 HOH A 46 646 132 HOH HOH . D 4 HOH A 47 647 103 HOH HOH . D 4 HOH A 48 648 120 HOH HOH . D 4 HOH A 49 649 106 HOH HOH . D 4 HOH A 50 650 22 HOH HOH . D 4 HOH A 51 651 14 HOH HOH . D 4 HOH A 52 652 19 HOH HOH . D 4 HOH A 53 653 98 HOH HOH . D 4 HOH A 54 654 57 HOH HOH . D 4 HOH A 55 655 140 HOH HOH . D 4 HOH A 56 656 59 HOH HOH . D 4 HOH A 57 657 17 HOH HOH . D 4 HOH A 58 658 117 HOH HOH . D 4 HOH A 59 659 32 HOH HOH . D 4 HOH A 60 660 10 HOH HOH . D 4 HOH A 61 661 62 HOH HOH . D 4 HOH A 62 662 44 HOH HOH . D 4 HOH A 63 663 15 HOH HOH . D 4 HOH A 64 664 80 HOH HOH . D 4 HOH A 65 665 105 HOH HOH . D 4 HOH A 66 666 43 HOH HOH . D 4 HOH A 67 667 66 HOH HOH . D 4 HOH A 68 668 27 HOH HOH . D 4 HOH A 69 669 136 HOH HOH . D 4 HOH A 70 670 18 HOH HOH . D 4 HOH A 71 671 83 HOH HOH . D 4 HOH A 72 672 150 HOH HOH . D 4 HOH A 73 673 13 HOH HOH . D 4 HOH A 74 674 89 HOH HOH . D 4 HOH A 75 675 119 HOH HOH . D 4 HOH A 76 676 137 HOH HOH . D 4 HOH A 77 677 114 HOH HOH . D 4 HOH A 78 678 40 HOH HOH . D 4 HOH A 79 679 122 HOH HOH . D 4 HOH A 80 680 94 HOH HOH . D 4 HOH A 81 681 37 HOH HOH . D 4 HOH A 82 682 125 HOH HOH . D 4 HOH A 83 683 90 HOH HOH . D 4 HOH A 84 684 34 HOH HOH . D 4 HOH A 85 685 64 HOH HOH . D 4 HOH A 86 686 149 HOH HOH . D 4 HOH A 87 687 91 HOH HOH . D 4 HOH A 88 688 99 HOH HOH . D 4 HOH A 89 689 8 HOH HOH . D 4 HOH A 90 690 68 HOH HOH . D 4 HOH A 91 691 49 HOH HOH . D 4 HOH A 92 692 48 HOH HOH . D 4 HOH A 93 693 124 HOH HOH . D 4 HOH A 94 694 58 HOH HOH . D 4 HOH A 95 695 134 HOH HOH . D 4 HOH A 96 696 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 3 30.511 8.818 -22.271 1 98.75 ? N1A COA 502 A 1 HETATM 2 C C2A COA . . . C 3 30.775 7.679 -21.617 1 99.66 ? C2A COA 502 A 1 HETATM 3 N N3A COA . . . C 3 30.119 7.116 -20.607 1 109.06 ? N3A COA 502 A 1 HETATM 4 C C4A COA . . . C 3 29.057 7.859 -20.262 1 106.76 ? C4A COA 502 A 1 HETATM 5 C C5A COA . . . C 3 28.655 9.045 -20.834 1 106.5 ? C5A COA 502 A 1 HETATM 6 C C6A COA . . . C 3 29.43 9.543 -21.898 1 103.77 ? C6A COA 502 A 1 HETATM 7 N N6A COA . . . C 3 29.163 10.677 -22.537 1 95.59 ? N6A COA 502 A 1 HETATM 8 N N7A COA . . . C 3 27.511 9.515 -20.203 1 103.73 ? N7A COA 502 A 1 HETATM 9 C C8A COA . . . C 3 27.25 8.617 -19.283 1 101.15 ? C8A COA 502 A 1 HETATM 10 N N9A COA . . . C 3 28.158 7.596 -19.266 1 102.3 ? N9A COA 502 A 1 HETATM 11 C C1B COA . . . C 3 28.17 6.428 -18.4 1 98.1 ? C1B COA 502 A 1 HETATM 12 C C2B COA . . . C 3 28.382 6.698 -16.918 1 92.96 ? C2B COA 502 A 1 HETATM 13 O O2B COA . . . C 3 29.743 6.903 -16.617 1 86.65 ? O2B COA 502 A 1 HETATM 14 C C3B COA . . . C 3 27.846 5.395 -16.327 1 94.08 ? C3B COA 502 A 1 HETATM 15 O O3B COA . . . C 3 28.874 4.419 -16.416 1 99.61 ? O3B COA 502 A 1 HETATM 16 P P3B COA . . . C 3 28.871 3.349 -15.213 1 97.27 ? P3B COA 502 A 1 HETATM 17 O O7A COA . . . C 3 29.027 4.12 -13.922 1 84.05 ? O7A COA 502 A 1 HETATM 18 O O8A COA . . . C 3 30.063 2.464 -15.496 1 97.64 ? O8A COA 502 A 1 HETATM 19 O O9A COA . . . C 3 27.571 2.577 -15.268 1 102.3 ? O9A COA 502 A 1 HETATM 20 C C4B COA . . . C 3 26.705 5.025 -17.272 1 90.03 ? C4B COA 502 A 1 HETATM 21 O O4B COA . . . C 3 26.897 5.838 -18.457 1 96.68 ? O4B COA 502 A 1 HETATM 22 C C5B COA . . . C 3 25.306 5.233 -16.749 1 89.68 ? C5B COA 502 A 1 HETATM 23 O O5B COA . . . C 3 25.31 6.28 -15.757 1 92.12 ? O5B COA 502 A 1 HETATM 24 P P1A COA . . . C 3 24.502 7.625 -16.064 1 86.02 ? P1A COA 502 A 1 HETATM 25 O O1A COA . . . C 3 23.041 7.375 -15.913 1 84.43 ? O1A COA 502 A 1 HETATM 26 O O2A COA . . . C 3 24.982 8.218 -17.342 1 67.2 ? O2A COA 502 A 1 HETATM 27 O O3A COA . . . C 3 25.033 8.519 -14.847 1 87.94 ? O3A COA 502 A 1 HETATM 28 P P2A COA . . . C 3 25.003 10.083 -14.512 1 95.14 ? P2A COA 502 A 1 HETATM 29 O O4A COA . . . C 3 23.592 10.564 -14.564 1 89.11 ? O4A COA 502 A 1 HETATM 30 O O5A COA . . . C 3 25.809 10.322 -13.281 1 88.39 ? O5A COA 502 A 1 HETATM 31 O O6A COA . . . C 3 25.796 10.706 -15.756 1 78.31 ? O6A COA 502 A 1 HETATM 32 C CBP COA . . . C 3 26.754 12.749 -16.588 1 74.28 ? CBP COA 502 A 1 HETATM 33 C CCP COA . . . C 3 25.456 12.042 -16.218 1 76.26 ? CCP COA 502 A 1 HETATM 34 C CDP COA . . . C 3 26.453 14.139 -17.148 1 71.23 ? CDP COA 502 A 1 HETATM 35 C CEP COA . . . C 3 27.609 12.9 -15.327 1 76.31 ? CEP COA 502 A 1 HETATM 36 C CAP COA . . . C 3 27.489 11.923 -17.649 1 69.38 ? CAP COA 502 A 1 HETATM 37 O OAP COA . . . C 3 26.716 11.982 -18.837 1 52.07 ? OAP COA 502 A 1 HETATM 38 C C9P COA . . . C 3 28.907 12.385 -17.938 1 77.6 ? C9P COA 502 A 1 HETATM 39 O O9P COA . . . C 3 29.834 11.983 -17.238 1 69.09 ? O9P COA 502 A 1 HETATM 40 N N8P COA . . . C 3 29.086 13.197 -18.972 1 78 ? N8P COA 502 A 1 HETATM 41 C C7P COA . . . C 3 30.269 14.032 -19.127 1 72 ? C7P COA 502 A 1 HETATM 42 C C6P COA . . . C 3 30.286 15.192 -18.159 1 64.37 ? C6P COA 502 A 1 HETATM 43 C C5P COA . . . C 3 29.322 16.28 -18.579 1 65.74 ? C5P COA 502 A 1 HETATM 44 O O5P COA . . . C 3 29.094 16.493 -19.766 1 56.82 ? O5P COA 502 A 1 HETATM 45 N N4P COA . . . C 3 28.737 16.988 -17.607 1 67.46 ? N4P COA 502 A 1 HETATM 46 C C3P COA . . . C 3 27.866 18.126 -17.861 1 71.01 ? C3P COA 502 A 1 HETATM 47 C C2P COA . . . C 3 26.52 17.986 -17.199 1 78.66 ? C2P COA 502 A 1 HETATM 48 S S1P COA . . . C 3 26.544 18.461 -15.451 1 94.11 ? S1P COA 502 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 764 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #