data_8ZWA
#
_model_server_result.job_id            u5o5vgrVaUAz75g_tl6ceQ 
_model_server_result.datetime_utc      '2024-12-01 03:35:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zwa 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
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_entry.id    8ZWA 
#
_exptl.entry_id    8ZWA 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-O-[(5'-PHOSPHO)RIBOSYL]ADENOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZWA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8ZWA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                RIA 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "2'-O-[(5'-PHOSPHO)RIBOSYL]ADENOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P OP1 RIA doub 275 n n 
P OP2 RIA sing 276 n n 
P OP3 RIA sing 277 n n 
P O5A RIA sing 278 n n 
OP2 HOP2 RIA sing 279 n n 
OP3 HOP3 RIA sing 280 n n 
O5A C5A RIA sing 281 n n 
C5A C4A RIA sing 282 n n 
C5A H5' RIA sing 283 n n 
C5A "H5''" RIA sing 284 n n 
C4A O4' RIA sing 285 n n 
C4A C3A RIA sing 286 n n 
C4A H4A RIA sing 287 n n 
O4' C1A RIA sing 288 n n 
C3A O3A RIA sing 289 n n 
C3A C2A RIA sing 290 n n 
C3A H3A RIA sing 291 n n 
O3A HO3A RIA sing 292 n n 
C2A O2A RIA sing 293 n n 
C2A C1A RIA sing 294 n n 
C2A H2A RIA sing 295 n n 
O2A C1' RIA sing 296 n n 
C1A N9 RIA sing 297 n n 
C1A H1A RIA sing 298 n n 
N9 C8 RIA sing 299 n y 
N9 C4 RIA sing 300 n y 
C8 N7 RIA doub 301 n y 
C8 H8 RIA sing 302 n n 
N7 C5 RIA sing 303 n y 
C5 C6 RIA sing 304 n y 
C5 C4 RIA doub 305 n y 
C6 N6 RIA sing 306 n n 
C6 N1 RIA doub 307 n y 
N6 HN61 RIA sing 308 n n 
N6 HN62 RIA sing 309 n n 
N1 C2 RIA sing 310 n y 
C2 N3 RIA doub 311 n y 
C2 H2 RIA sing 312 n n 
N3 C4 RIA sing 313 n y 
C1' O1' RIA sing 314 n n 
C1' C2' RIA sing 315 n n 
C1' H1' RIA sing 316 n n 
O1' C4' RIA sing 317 n n 
C2' O2' RIA sing 318 n n 
C2' C3' RIA sing 319 n n 
C2' H2' RIA sing 320 n n 
O2' HO2' RIA sing 321 n n 
C3' O3' RIA sing 322 n n 
C3' C4' RIA sing 323 n n 
C3' H3' RIA sing 324 n n 
O3' HO3' RIA sing 325 n n 
C4' C5' RIA sing 326 n n 
C4' H4' RIA sing 327 n n 
C5' O5' RIA sing 328 n n 
C5' "H5'1" RIA sing 329 n n 
C5' "H5'2" RIA sing 330 n n 
O5' P' RIA sing 331 n n 
P' O1X RIA doub 332 n n 
P' O2X RIA sing 333 n n 
P' O3X RIA sing 334 n n 
O2X "HO'2" RIA sing 335 n n 
O3X "HO'3" RIA sing 336 n n 
#
_atom_sites.entry_id                     8ZWA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           RIA 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      701 
_pdbx_nonpoly_scheme.auth_seq_num     701 
_pdbx_nonpoly_scheme.pdb_mon_id       RIA 
_pdbx_nonpoly_scheme.auth_mon_id      PRM 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P RIA . . . D 4 120.389 112.429 106.479 1 123.22 ? P RIA 701 B 1 
HETATM 2 O OP1 RIA . . . D 4 119.418 112.985 107.439 1 123.27 ? OP1 RIA 701 B 1 
HETATM 3 O OP2 RIA . . . D 4 120.832 113.539 105.577 1 120.99 ? OP2 RIA 701 B 1 
HETATM 4 O OP3 RIA . . . D 4 119.699 111.255 105.623 1 120.14 ? OP3 RIA 701 B 1 
HETATM 5 O O5A RIA . . . D 4 121.678 111.821 107.286 1 121.83 ? O5A RIA 701 B 1 
HETATM 6 C C5A RIA . . . D 4 121.47 110.732 108.113 1 120.33 ? C5A RIA 701 B 1 
HETATM 7 C C4A RIA . . . D 4 121.149 111.205 109.413 1 119.65 ? C4A RIA 701 B 1 
HETATM 8 O O4' RIA . . . D 4 121.532 110.151 110.45 1 119.7 ? O4' RIA 701 B 1 
HETATM 9 C C3A RIA . . . D 4 121.99 112.499 109.727 1 119.33 ? C3A RIA 701 B 1 
HETATM 10 O O3A RIA . . . D 4 121.039 113.643 110.109 1 118.88 ? O3A RIA 701 B 1 
HETATM 11 C C2A RIA . . . D 4 122.832 112.094 110.884 1 119.97 ? C2A RIA 701 B 1 
HETATM 12 O O2A RIA . . . D 4 122.817 113.147 111.926 1 119.92 ? O2A RIA 701 B 1 
HETATM 13 C C1A RIA . . . D 4 122.08 110.733 111.447 1 119.12 ? C1A RIA 701 B 1 
HETATM 14 N N9 RIA . . . D 4 123.092 109.867 111.984 1 118.77 ? N9 RIA 701 B 1 
HETATM 15 C C8 RIA . . . D 4 124.221 109.581 111.402 1 119.43 ? C8 RIA 701 B 1 
HETATM 16 N N7 RIA . . . D 4 124.92 108.763 112.163 1 119.08 ? N7 RIA 701 B 1 
HETATM 17 C C5 RIA . . . D 4 124.219 108.525 113.261 1 118.63 ? C5 RIA 701 B 1 
HETATM 18 C C6 RIA . . . D 4 124.43 107.751 114.412 1 118.51 ? C6 RIA 701 B 1 
HETATM 19 N N6 RIA . . . D 4 125.685 106.972 114.564 1 120.03 ? N6 RIA 701 B 1 
HETATM 20 N N1 RIA . . . D 4 123.504 107.728 115.334 1 117.82 ? N1 RIA 701 B 1 
HETATM 21 C C2 RIA . . . D 4 122.375 108.429 115.194 1 119.83 ? C2 RIA 701 B 1 
HETATM 22 N N3 RIA . . . D 4 122.144 109.168 114.129 1 119.98 ? N3 RIA 701 B 1 
HETATM 23 C C4 RIA . . . D 4 123.054 109.228 113.153 1 118.99 ? C4 RIA 701 B 1 
HETATM 24 C C1' RIA . . . D 4 124.106 113.167 112.602 1 119.77 ? C1' RIA 701 B 1 
HETATM 25 O O1' RIA . . . D 4 124.008 112.392 113.963 1 119.42 ? O1' RIA 701 B 1 
HETATM 26 C C2' RIA . . . D 4 124.452 114.562 113.02 1 120.54 ? C2' RIA 701 B 1 
HETATM 27 O O2' RIA . . . D 4 125.888 114.748 113.032 1 123.01 ? O2' RIA 701 B 1 
HETATM 28 C C3' RIA . . . D 4 123.84 114.632 114.554 1 119.83 ? C3' RIA 701 B 1 
HETATM 29 O O3' RIA . . . D 4 124.483 115.681 115.291 1 122.73 ? O3' RIA 701 B 1 
HETATM 30 C C4' RIA . . . D 4 124.122 113.477 115.092 1 120.2 ? C4' RIA 701 B 1 
HETATM 31 C C5' RIA . . . D 4 123.092 113.164 116.205 1 120.88 ? C5' RIA 701 B 1 
HETATM 32 O O5' RIA . . . D 4 121.827 112.943 115.591 1 121.03 ? O5' RIA 701 B 1 
HETATM 33 P P' RIA . . . D 4 120.453 113.2 116.526 1 121.41 ? P' RIA 701 B 1 
HETATM 34 O O1X RIA . . . D 4 120.51 114.586 117.1 1 120.26 ? O1X RIA 701 B 1 
HETATM 35 O O2X RIA . . . D 4 119.197 113.055 115.664 1 119.51 ? O2X RIA 701 B 1 
HETATM 36 O O3X RIA . . . D 4 120.406 112.177 117.671 1 119.6 ? O3X RIA 701 B 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#