data_8ZX4 # _model_server_result.job_id 55LhOKJ_pvjZO7JO_Z7yvg _model_server_result.datetime_utc '2025-03-05 02:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8ZX4 # _exptl.entry_id 8ZX4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 572.623 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-2-oxidanyl-3-[oxidanyl-[(2~{S},3~{R},5~{R},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] hexadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZX4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 10 R CYS 10 1_555 D SG CYS 260 R CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 R CYS 94 1_555 D SG CYS 168 R CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C25 H49 O12 P' _chem_comp.formula_weight 572.623 _chem_comp.id A1D9E _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-2-oxidanyl-3-[oxidanyl-[(2~{S},3~{R},5~{R},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O34 C31 A1D9E sing 1 n n O35 C30 A1D9E sing 2 n n C31 C30 A1D9E sing 3 n n C31 C32 A1D9E sing 4 n n O33 C32 A1D9E sing 5 n n C30 C29 A1D9E sing 6 n n C32 C27 A1D9E sing 7 n n C29 O36 A1D9E sing 8 n n C29 C28 A1D9E sing 9 n n C27 O26 A1D9E sing 10 n n C27 C28 A1D9E sing 11 n n O26 P23 A1D9E sing 12 n n C28 O37 A1D9E sing 13 n n O25 P23 A1D9E doub 14 n n P23 O24 A1D9E sing 15 n n P23 O22 A1D9E sing 16 n n O22 C21 A1D9E sing 17 n n C21 C20 A1D9E sing 18 n n C20 O38 A1D9E sing 19 n n C20 C19 A1D9E sing 20 n n C19 O18 A1D9E sing 21 n n O18 C16 A1D9E sing 22 n n C15 C16 A1D9E sing 23 n n C15 C14 A1D9E sing 24 n n C16 O17 A1D9E doub 25 n n C14 C13 A1D9E sing 26 n n C13 C12 A1D9E sing 27 n n C12 C11 A1D9E sing 28 n n C11 C10 A1D9E sing 29 n n C10 C09 A1D9E sing 30 n n C09 C08 A1D9E sing 31 n n C08 C07 A1D9E sing 32 n n C07 C06 A1D9E sing 33 n n C06 C05 A1D9E sing 34 n n C04 C03 A1D9E sing 35 n n C04 C05 A1D9E sing 36 n n C03 C02 A1D9E sing 37 n n C02 C01 A1D9E sing 38 n n C10 H1 A1D9E sing 39 n n C15 H2 A1D9E sing 40 n n C15 H3 A1D9E sing 41 n n C19 H4 A1D9E sing 42 n n C19 H5 A1D9E sing 43 n n C28 H6 A1D9E sing 44 n n C27 H7 A1D9E sing 45 n n C01 H8 A1D9E sing 46 n n C01 H9 A1D9E sing 47 n n C01 H10 A1D9E sing 48 n n C02 H11 A1D9E sing 49 n n C03 H12 A1D9E sing 50 n n C04 H13 A1D9E sing 51 n n C05 H14 A1D9E sing 52 n n C06 H15 A1D9E sing 53 n n C06 H16 A1D9E sing 54 n n C07 H17 A1D9E sing 55 n n C07 H18 A1D9E sing 56 n n C08 H19 A1D9E sing 57 n n C08 H20 A1D9E sing 58 n n C09 H21 A1D9E sing 59 n n C09 H22 A1D9E sing 60 n n C11 H23 A1D9E sing 61 n n C12 H24 A1D9E sing 62 n n C12 H25 A1D9E sing 63 n n C13 H26 A1D9E sing 64 n n C13 H27 A1D9E sing 65 n n C14 H28 A1D9E sing 66 n n C14 H29 A1D9E sing 67 n n C20 H30 A1D9E sing 68 n n C21 H31 A1D9E sing 69 n n C21 H32 A1D9E sing 70 n n C29 H33 A1D9E sing 71 n n C30 H34 A1D9E sing 72 n n C31 H35 A1D9E sing 73 n n C32 H36 A1D9E sing 74 n n O24 H37 A1D9E sing 75 n n O33 H38 A1D9E sing 76 n n O34 H39 A1D9E sing 77 n n O35 H40 A1D9E sing 78 n n O36 H41 A1D9E sing 79 n n O37 H42 A1D9E sing 80 n n O38 H43 A1D9E sing 81 n n C10 H44 A1D9E sing 82 n n C02 H45 A1D9E sing 83 n n C03 H46 A1D9E sing 84 n n C04 H47 A1D9E sing 85 n n C05 H48 A1D9E sing 86 n n C11 H49 A1D9E sing 87 n n # _atom_sites.entry_id 8ZX4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id A1D9E _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id A1D9E _pdbx_nonpoly_scheme.auth_mon_id SOY _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1D9E . . . E 5 115.838 113.299 81.513 1 56.27 ? C10 A1D9E 301 R 1 HETATM 2 C C15 A1D9E . . . E 5 113.217 111.057 76.53 1 56.27 ? C15 A1D9E 301 R 1 HETATM 3 C C19 A1D9E . . . E 5 110.639 110.893 75.119 1 56.27 ? C19 A1D9E 301 R 1 HETATM 4 C C28 A1D9E . . . E 5 107.783 112.396 69.328 1 56.27 ? C28 A1D9E 301 R 1 HETATM 5 C C27 A1D9E . . . E 5 109.277 112.096 68.84 1 56.27 ? C27 A1D9E 301 R 1 HETATM 6 C C01 A1D9E . . . E 5 122.267 111.565 88.662 1 56.27 ? C01 A1D9E 301 R 1 HETATM 7 C C02 A1D9E . . . E 5 120.738 111.528 88.484 1 56.27 ? C02 A1D9E 301 R 1 HETATM 8 C C03 A1D9E . . . E 5 120.239 111.063 87.089 1 56.27 ? C03 A1D9E 301 R 1 HETATM 9 C C04 A1D9E . . . E 5 118.741 111.366 86.77 1 56.27 ? C04 A1D9E 301 R 1 HETATM 10 C C05 A1D9E . . . E 5 118.219 112.765 87.198 1 56.27 ? C05 A1D9E 301 R 1 HETATM 11 C C06 A1D9E . . . E 5 116.803 113.154 86.668 1 56.27 ? C06 A1D9E 301 R 1 HETATM 12 C C07 A1D9E . . . E 5 116.775 113.945 85.327 1 56.27 ? C07 A1D9E 301 R 1 HETATM 13 C C08 A1D9E . . . E 5 116.223 113.164 84.106 1 56.27 ? C08 A1D9E 301 R 1 HETATM 14 C C09 A1D9E . . . E 5 116.797 113.544 82.721 1 56.27 ? C09 A1D9E 301 R 1 HETATM 15 C C11 A1D9E . . . E 5 116.509 112.853 80.189 1 56.27 ? C11 A1D9E 301 R 1 HETATM 16 C C12 A1D9E . . . E 5 115.626 112.969 78.912 1 56.27 ? C12 A1D9E 301 R 1 HETATM 17 C C13 A1D9E . . . E 5 114.855 111.681 78.506 1 56.27 ? C13 A1D9E 301 R 1 HETATM 18 C C14 A1D9E . . . E 5 114.643 111.473 76.973 1 56.27 ? C14 A1D9E 301 R 1 HETATM 19 C C16 A1D9E . . . E 5 112.103 112.103 76.624 1 56.27 ? C16 A1D9E 301 R 1 HETATM 20 C C20 A1D9E . . . E 5 109.957 111.359 73.766 1 56.27 ? C20 A1D9E 301 R 1 HETATM 21 C C21 A1D9E . . . E 5 110.907 112.193 72.826 1 56.27 ? C21 A1D9E 301 R 1 HETATM 22 C C29 A1D9E . . . E 5 106.795 113.037 68.23 1 56.27 ? C29 A1D9E 301 R 1 HETATM 23 C C30 A1D9E . . . E 5 106.937 112.439 66.762 1 56.27 ? C30 A1D9E 301 R 1 HETATM 24 C C31 A1D9E . . . E 5 108.069 111.386 66.655 1 56.27 ? C31 A1D9E 301 R 1 HETATM 25 C C32 A1D9E . . . E 5 109.379 111.96 67.265 1 56.27 ? C32 A1D9E 301 R 1 HETATM 26 O O17 A1D9E . . . E 5 112.313 113.173 77.215 1 56.27 ? O17 A1D9E 301 R 1 HETATM 27 O O18 A1D9E . . . E 5 110.881 111.92 76.068 1 56.27 ? O18 A1D9E 301 R 1 HETATM 28 O O22 A1D9E . . . E 5 110.859 111.753 71.527 1 56.27 ? O22 A1D9E 301 R 1 HETATM 29 O O24 A1D9E . . . E 5 112.154 113.921 70.882 1 56.27 -1 O24 A1D9E 301 R 1 HETATM 30 O O25 A1D9E . . . E 5 112.35 111.825 69.389 1 56.27 ? O25 A1D9E 301 R 1 HETATM 31 O O26 A1D9E . . . E 5 110.153 113.054 69.272 1 56.27 ? O26 A1D9E 301 R 1 HETATM 32 O O33 A1D9E . . . E 5 109.646 113.214 66.711 1 56.27 ? O33 A1D9E 301 R 1 HETATM 33 O O34 A1D9E . . . E 5 108.309 111.122 65.293 1 56.27 ? O34 A1D9E 301 R 1 HETATM 34 O O35 A1D9E . . . E 5 105.705 111.831 66.452 1 56.27 ? O35 A1D9E 301 R 1 HETATM 35 O O36 A1D9E . . . E 5 105.479 112.87 68.669 1 56.27 ? O36 A1D9E 301 R 1 HETATM 36 O O37 A1D9E . . . E 5 107.834 113.293 70.403 1 56.27 ? O37 A1D9E 301 R 1 HETATM 37 O O38 A1D9E . . . E 5 108.859 112.141 74.112 1 56.27 ? O38 A1D9E 301 R 1 HETATM 38 P P23 A1D9E . . . E 5 111.545 112.713 70.265 1 56.27 ? P23 A1D9E 301 R 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #