data_8ZXD
#
_model_server_result.job_id            RMZFQ9a0GBvHbrQ1tBomBw 
_model_server_result.datetime_utc      '2024-12-27 13:02:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":603}' 
#
_entry.id    8ZXD 
#
_exptl.entry_id    8ZXD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              677.933 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZXD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
? 3 O N N 
? 3 Q N N 
? 3 T N N 
? 3 X N N 
#
_chem_comp.formula           'C36 H72 N O8 P' 
_chem_comp.formula_weight    677.933 
_chem_comp.id                MC3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MC3 sing 216 n n 
C1 O3P MC3 sing 217 n n 
C1 H11 MC3 sing 218 n n 
C1 H12 MC3 sing 219 n n 
C2 C3 MC3 sing 220 n n 
C2 O2 MC3 sing 221 n n 
C2 H2 MC3 sing 222 n n 
C3 O3 MC3 sing 223 n n 
C3 H31 MC3 sing 224 n n 
C3 H32 MC3 sing 225 n n 
C4 C5 MC3 sing 226 n n 
C4 O4P MC3 sing 227 n n 
C4 H41 MC3 sing 228 n n 
C4 H42 MC3 sing 229 n n 
C5 N MC3 sing 230 n n 
C5 H51 MC3 sing 231 n n 
C5 H52 MC3 sing 232 n n 
C6 N MC3 sing 233 n n 
C6 H61 MC3 sing 234 n n 
C6 H62 MC3 sing 235 n n 
C6 H63 MC3 sing 236 n n 
C7 N MC3 sing 237 n n 
C7 H71 MC3 sing 238 n n 
C7 H72 MC3 sing 239 n n 
C7 H73 MC3 sing 240 n n 
C8 N MC3 sing 241 n n 
C8 H81 MC3 sing 242 n n 
C8 H82 MC3 sing 243 n n 
C8 H83 MC3 sing 244 n n 
C11 C12 MC3 sing 245 n n 
C11 O3 MC3 sing 246 n n 
C11 O11 MC3 doub 247 n n 
C12 C13 MC3 sing 248 n n 
C12 H121 MC3 sing 249 n n 
C12 H122 MC3 sing 250 n n 
C13 C14 MC3 sing 251 n n 
C13 H131 MC3 sing 252 n n 
C13 H132 MC3 sing 253 n n 
C14 C15 MC3 sing 254 n n 
C14 H141 MC3 sing 255 n n 
C14 H142 MC3 sing 256 n n 
C15 C16 MC3 sing 257 n n 
C15 H151 MC3 sing 258 n n 
C15 H152 MC3 sing 259 n n 
C16 C17 MC3 sing 260 n n 
C16 H161 MC3 sing 261 n n 
C16 H162 MC3 sing 262 n n 
C17 C18 MC3 sing 263 n n 
C17 H171 MC3 sing 264 n n 
C17 H172 MC3 sing 265 n n 
C18 C19 MC3 sing 266 n n 
C18 H181 MC3 sing 267 n n 
C18 H182 MC3 sing 268 n n 
C19 C20 MC3 sing 269 n n 
C19 H191 MC3 sing 270 n n 
C19 H192 MC3 sing 271 n n 
C20 C21 MC3 sing 272 n n 
C20 H201 MC3 sing 273 n n 
C20 H202 MC3 sing 274 n n 
C21 C22 MC3 sing 275 n n 
C21 H211 MC3 sing 276 n n 
C21 H212 MC3 sing 277 n n 
C22 C23 MC3 sing 278 n n 
C22 H221 MC3 sing 279 n n 
C22 H222 MC3 sing 280 n n 
C23 C24 MC3 sing 281 n n 
C23 H231 MC3 sing 282 n n 
C23 H232 MC3 sing 283 n n 
C24 H241 MC3 sing 284 n n 
C24 H242 MC3 sing 285 n n 
C24 H243 MC3 sing 286 n n 
C31 C32 MC3 sing 287 n n 
C31 O2 MC3 sing 288 n n 
C31 O31 MC3 doub 289 n n 
C32 C33 MC3 sing 290 n n 
C32 H321 MC3 sing 291 n n 
C32 H322 MC3 sing 292 n n 
C33 C34 MC3 sing 293 n n 
C33 H331 MC3 sing 294 n n 
C33 H332 MC3 sing 295 n n 
C34 C35 MC3 sing 296 n n 
C34 H341 MC3 sing 297 n n 
C34 H342 MC3 sing 298 n n 
C35 C36 MC3 sing 299 n n 
C35 H351 MC3 sing 300 n n 
C35 H352 MC3 sing 301 n n 
C36 C37 MC3 sing 302 n n 
C36 H361 MC3 sing 303 n n 
C36 H362 MC3 sing 304 n n 
C37 C38 MC3 sing 305 n n 
C37 H371 MC3 sing 306 n n 
C37 H372 MC3 sing 307 n n 
C38 C39 MC3 sing 308 n n 
C38 H381 MC3 sing 309 n n 
C38 H382 MC3 sing 310 n n 
C39 C40 MC3 sing 311 n n 
C39 H391 MC3 sing 312 n n 
C39 H392 MC3 sing 313 n n 
C40 C41 MC3 sing 314 n n 
C40 H401 MC3 sing 315 n n 
C40 H402 MC3 sing 316 n n 
C41 C42 MC3 sing 317 n n 
C41 H411 MC3 sing 318 n n 
C41 H412 MC3 sing 319 n n 
C42 C43 MC3 sing 320 n n 
C42 H421 MC3 sing 321 n n 
C42 H422 MC3 sing 322 n n 
C43 C44 MC3 sing 323 n n 
C43 H431 MC3 sing 324 n n 
C43 H432 MC3 sing 325 n n 
C44 H441 MC3 sing 326 n n 
C44 H442 MC3 sing 327 n n 
C44 H443 MC3 sing 328 n n 
O1P P MC3 doub 329 n n 
O2P P MC3 sing 330 n n 
O3P P MC3 sing 331 n n 
O4P P MC3 sing 332 n n 
#
_atom_sites.entry_id                     8ZXD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 Y01 A 1 701 701 Y01 Y01 . 
H 3 MC3 A 1 702 801 MC3 MC3 . 
I 2 Y01 A 1 703 601 Y01 Y01 . 
J 2 Y01 B 1 701 701 Y01 Y01 . 
K 3 MC3 B 1 702 801 MC3 MC3 . 
L 2 Y01 B 1 703 601 Y01 Y01 . 
M 2 Y01 C 1 601 601 Y01 Y01 . 
N 2 Y01 C 1 602 701 Y01 Y01 . 
O 3 MC3 C 1 603 801 MC3 MC3 . 
P 2 Y01 D 1 701 701 Y01 Y01 . 
Q 3 MC3 D 1 702 801 MC3 MC3 . 
R 2 Y01 D 1 703 601 Y01 Y01 . 
S 2 Y01 E 1 701 701 Y01 Y01 . 
T 3 MC3 E 1 702 801 MC3 MC3 . 
U 2 Y01 E 1 703 601 Y01 Y01 . 
V 2 Y01 F 1 601 601 Y01 Y01 . 
W 2 Y01 F 1 602 701 Y01 Y01 . 
X 3 MC3 F 1 603 801 MC3 MC3 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MC3 . . . O 3 204.535 192.993 135.526 1 133.23 ? C1 MC3 603 C 1 
HETATM 2 C C2 MC3 . . . O 3 205.253 194.241 135.014 1 132.13 ? C2 MC3 603 C 1 
HETATM 3 C C3 MC3 . . . O 3 206.699 194.01 134.64 1 130.79 ? C3 MC3 603 C 1 
HETATM 4 C C11 MC3 . . . O 3 207.257 193.657 132.37 1 133.34 ? C11 MC3 603 C 1 
HETATM 5 C C12 MC3 . . . O 3 207.029 194.258 131.012 1 130.49 ? C12 MC3 603 C 1 
HETATM 6 C C13 MC3 . . . O 3 207.215 193.29 129.856 1 128.73 ? C13 MC3 603 C 1 
HETATM 7 C C14 MC3 . . . O 3 206.737 193.896 128.543 1 129.59 ? C14 MC3 603 C 1 
HETATM 8 C C15 MC3 . . . O 3 206.892 192.958 127.353 1 127.56 ? C15 MC3 603 C 1 
HETATM 9 C C16 MC3 . . . O 3 206.379 193.564 126.053 1 129.03 ? C16 MC3 603 C 1 
HETATM 10 C C17 MC3 . . . O 3 204.89 193.884 126.088 1 127.05 ? C17 MC3 603 C 1 
HETATM 11 C C18 MC3 . . . O 3 204.454 194.871 125.014 1 125.27 ? C18 MC3 603 C 1 
HETATM 12 C C19 MC3 . . . O 3 204.423 194.272 123.613 1 129.83 ? C19 MC3 603 C 1 
HETATM 13 C C20 MC3 . . . O 3 204.007 195.271 122.541 1 129.06 ? C20 MC3 603 C 1 
HETATM 14 C C31 MC3 . . . O 3 203.292 194.861 133.805 1 129.35 ? C31 MC3 603 C 1 
HETATM 15 O O2 MC3 . . . O 3 204.617 194.787 133.857 1 135.32 ? O2 MC3 603 C 1 
HETATM 16 O O3 MC3 . . . O 3 206.918 194.511 133.327 1 135.91 ? O3 MC3 603 C 1 
HETATM 17 O O11 MC3 . . . O 3 207.689 192.551 132.587 1 133.31 ? O11 MC3 603 C 1 
HETATM 18 O O1P MC3 . . . O 3 204.622 191.433 138.954 1 139.92 ? O1P MC3 603 C 1 
HETATM 19 O O2P MC3 . . . O 3 203.488 190.66 136.754 1 133.3 ? O2P MC3 603 C 1 
HETATM 20 O O3P MC3 . . . O 3 204.439 193.035 136.93 1 134.18 ? O3P MC3 603 C 1 
HETATM 21 O O4P MC3 . . . O 3 202.454 192.56 138.171 1 128.61 ? O4P MC3 603 C 1 
HETATM 22 P P MC3 . . . O 3 203.819 191.75 137.725 1 147.67 ? P MC3 603 C 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           44 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           22 
#