data_8ZXD
#
_model_server_result.job_id            JFsexLCkCKMQElx524foGA 
_model_server_result.datetime_utc      '2024-12-27 13:18:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":701}' 
#
_entry.id    8ZXD 
#
_exptl.entry_id    8ZXD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZXD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 P N N 
? 2 R N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 491 n n 
CBA CAB Y01 sing 492 n n 
CBA CAN Y01 sing 493 n n 
CAN CAJ Y01 sing 494 n n 
CAJ CAO Y01 sing 495 n n 
CAO CBB Y01 sing 496 n n 
CBB CAC Y01 sing 497 n n 
CBB CBE Y01 sing 498 n n 
CBE CAP Y01 sing 499 n n 
CBE CBI Y01 sing 500 n n 
CAP CAQ Y01 sing 501 n n 
CAQ CBG Y01 sing 502 n n 
CBG CBI Y01 sing 503 n n 
CBG CBD Y01 sing 504 n n 
CBI CAE Y01 sing 505 n n 
CBI CAU Y01 sing 506 n n 
CAU CAS Y01 sing 507 n n 
CAS CBF Y01 sing 508 n n 
CBF CBD Y01 sing 509 n n 
CBF CBH Y01 sing 510 n n 
CBD CAK Y01 sing 511 n n 
CAK CAI Y01 sing 512 n n 
CAI CAZ Y01 doub 513 n n 
CAZ CAV Y01 sing 514 n n 
CAZ CBH Y01 sing 515 n n 
CAV CBC Y01 sing 516 n n 
CBH CAD Y01 sing 517 n n 
CBH CAT Y01 sing 518 n n 
CAT CAR Y01 sing 519 n n 
CAR CBC Y01 sing 520 n n 
CBC OAW Y01 sing 521 n n 
OAW CAY Y01 sing 522 n n 
CAY OAG Y01 doub 523 n n 
CAY CAM Y01 sing 524 n n 
CAM CAL Y01 sing 525 n n 
CAL CAX Y01 sing 526 n n 
CAX OAH Y01 sing 527 n n 
CAX OAF Y01 doub 528 n n 
CAA HAA1 Y01 sing 529 n n 
CAA HAA2 Y01 sing 530 n n 
CAA HAA3 Y01 sing 531 n n 
CBA HBA Y01 sing 532 n n 
CAB HAB1 Y01 sing 533 n n 
CAB HAB2 Y01 sing 534 n n 
CAB HAB3 Y01 sing 535 n n 
CAN HAN1 Y01 sing 536 n n 
CAN HAN2 Y01 sing 537 n n 
CAJ HAJ1 Y01 sing 538 n n 
CAJ HAJ2 Y01 sing 539 n n 
CAO HAO1 Y01 sing 540 n n 
CAO HAO2 Y01 sing 541 n n 
CBB HBB Y01 sing 542 n n 
CAC HAC1 Y01 sing 543 n n 
CAC HAC2 Y01 sing 544 n n 
CAC HAC3 Y01 sing 545 n n 
CBE HBE Y01 sing 546 n n 
CAP HAP1 Y01 sing 547 n n 
CAP HAP2 Y01 sing 548 n n 
CAQ HAQ1 Y01 sing 549 n n 
CAQ HAQ2 Y01 sing 550 n n 
CBG HBG Y01 sing 551 n n 
CBD HBD Y01 sing 552 n n 
CAE HAE1 Y01 sing 553 n n 
CAE HAE2 Y01 sing 554 n n 
CAE HAE3 Y01 sing 555 n n 
CAU HAU1 Y01 sing 556 n n 
CAU HAU2 Y01 sing 557 n n 
CAS HAS1 Y01 sing 558 n n 
CAS HAS2 Y01 sing 559 n n 
CBF HBF Y01 sing 560 n n 
CAK HAK1 Y01 sing 561 n n 
CAK HAK2 Y01 sing 562 n n 
CAI HAI Y01 sing 563 n n 
CAV HAV1 Y01 sing 564 n n 
CAV HAV2 Y01 sing 565 n n 
CBC HBC Y01 sing 566 n n 
CAD HAD1 Y01 sing 567 n n 
CAD HAD2 Y01 sing 568 n n 
CAD HAD3 Y01 sing 569 n n 
CAT HAT1 Y01 sing 570 n n 
CAT HAT2 Y01 sing 571 n n 
CAR HAR1 Y01 sing 572 n n 
CAR HAR2 Y01 sing 573 n n 
CAM HAM1 Y01 sing 574 n n 
CAM HAM2 Y01 sing 575 n n 
CAL HAL1 Y01 sing 576 n n 
CAL HAL2 Y01 sing 577 n n 
OAH HAH Y01 sing 578 n n 
#
_atom_sites.entry_id                     8ZXD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 Y01 A 1 701 701 Y01 Y01 . 
H 3 MC3 A 1 702 801 MC3 MC3 . 
I 2 Y01 A 1 703 601 Y01 Y01 . 
J 2 Y01 B 1 701 701 Y01 Y01 . 
K 3 MC3 B 1 702 801 MC3 MC3 . 
L 2 Y01 B 1 703 601 Y01 Y01 . 
M 2 Y01 C 1 601 601 Y01 Y01 . 
N 2 Y01 C 1 602 701 Y01 Y01 . 
O 3 MC3 C 1 603 801 MC3 MC3 . 
P 2 Y01 D 1 701 701 Y01 Y01 . 
Q 3 MC3 D 1 702 801 MC3 MC3 . 
R 2 Y01 D 1 703 601 Y01 Y01 . 
S 2 Y01 E 1 701 701 Y01 Y01 . 
T 3 MC3 E 1 702 801 MC3 MC3 . 
U 2 Y01 E 1 703 601 Y01 Y01 . 
V 2 Y01 F 1 601 601 Y01 Y01 . 
W 2 Y01 F 1 602 701 Y01 Y01 . 
X 3 MC3 F 1 603 801 MC3 MC3 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . J 2 193.774 210.977 121.199 1 153.21 ? CAA Y01 701 B 1 
HETATM 2 C CBA Y01 . . . J 2 193.406 212.273 120.482 1 154.6 ? CBA Y01 701 B 1 
HETATM 3 C CAB Y01 . . . J 2 194.3 212.477 119.262 1 151.67 ? CAB Y01 701 B 1 
HETATM 4 C CAN Y01 . . . J 2 193.491 213.489 121.407 1 154.55 ? CAN Y01 701 B 1 
HETATM 5 C CAJ Y01 . . . J 2 192.698 213.373 122.704 1 154.7 ? CAJ Y01 701 B 1 
HETATM 6 C CAO Y01 . . . J 2 192.756 214.648 123.542 1 153.61 ? CAO Y01 701 B 1 
HETATM 7 C CBB Y01 . . . J 2 193.697 214.601 124.756 1 152.08 ? CBB Y01 701 B 1 
HETATM 8 C CAC Y01 . . . J 2 195.124 214.916 124.314 1 152.59 ? CAC Y01 701 B 1 
HETATM 9 C CBE Y01 . . . J 2 193.16 215.52 125.867 1 154.48 ? CBE Y01 701 B 1 
HETATM 10 C CAP Y01 . . . J 2 191.636 215.308 126.09 1 153.51 ? CAP Y01 701 B 1 
HETATM 11 C CAQ Y01 . . . J 2 191.357 215.485 127.594 1 153.32 ? CAQ Y01 701 B 1 
HETATM 12 C CBG Y01 . . . J 2 192.635 216.135 128.102 1 155.07 ? CBG Y01 701 B 1 
HETATM 13 C CBI Y01 . . . J 2 193.752 215.444 127.302 1 152.75 ? CBI Y01 701 B 1 
HETATM 14 C CAE Y01 . . . J 2 193.932 213.98 127.719 1 151.5 ? CAE Y01 701 B 1 
HETATM 15 C CAU Y01 . . . J 2 195.024 216.257 127.563 1 150.74 ? CAU Y01 701 B 1 
HETATM 16 C CAS Y01 . . . J 2 195.333 216.386 129.055 1 152.5 ? CAS Y01 701 B 1 
HETATM 17 C CBF Y01 . . . J 2 194.177 216.976 129.868 1 154.61 ? CBF Y01 701 B 1 
HETATM 18 C CBD Y01 . . . J 2 192.865 216.222 129.604 1 153.77 ? CBD Y01 701 B 1 
HETATM 19 C CAK Y01 . . . J 2 191.702 216.94 130.282 1 152.78 ? CAK Y01 701 B 1 
HETATM 20 C CAI Y01 . . . J 2 192.037 217.455 131.642 1 152.96 ? CAI Y01 701 B 1 
HETATM 21 C CAZ Y01 . . . J 2 193.268 217.555 132.141 1 153.97 ? CAZ Y01 701 B 1 
HETATM 22 C CAV Y01 . . . J 2 193.477 218.079 133.539 1 153.92 ? CAV Y01 701 B 1 
HETATM 23 C CBH Y01 . . . J 2 194.505 217.114 131.376 1 154.53 ? CBH Y01 701 B 1 
HETATM 24 C CAD Y01 . . . J 2 195.007 215.791 131.976 1 152.21 ? CAD Y01 701 B 1 
HETATM 25 C CAT Y01 . . . J 2 195.593 218.199 131.533 1 153.97 ? CAT Y01 701 B 1 
HETATM 26 C CAR Y01 . . . J 2 195.834 218.656 132.966 1 150.94 ? CAR Y01 701 B 1 
HETATM 27 C CBC Y01 . . . J 2 194.542 219.168 133.566 1 152.91 ? CBC Y01 701 B 1 
HETATM 28 O OAW Y01 . . . J 2 194.829 219.572 134.915 1 155.32 ? OAW Y01 701 B 1 
HETATM 29 C CAY Y01 . . . J 2 195.239 220.818 135.149 1 156.65 ? CAY Y01 701 B 1 
HETATM 30 O OAG Y01 . . . J 2 195.202 221.697 134.323 1 155.49 ? OAG Y01 701 B 1 
HETATM 31 C CAM Y01 . . . J 2 195.746 220.967 136.558 1 155.43 ? CAM Y01 701 B 1 
HETATM 32 C CAL Y01 . . . J 2 196.999 220.162 136.844 1 154.12 ? CAL Y01 701 B 1 
HETATM 33 C CAX Y01 . . . J 2 198.298 220.774 136.288 1 153.97 ? CAX Y01 701 B 1 
HETATM 34 O OAH Y01 . . . J 2 198.638 221.865 136.79 1 153.02 ? OAH Y01 701 B 1 
HETATM 35 O OAF Y01 . . . J 2 198.903 220.148 135.395 1 153.42 ? OAF Y01 701 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#