data_8ZYQ
#
_model_server_result.job_id            SSyrmwpYUUWQ9Gnb7oNSbA 
_model_server_result.datetime_utc      '2025-01-02 10:20:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zyq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1101}' 
#
_entry.id    8ZYQ 
#
_exptl.entry_id    8ZYQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              461.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZYQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZYQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H29 F2 N3 O' 
_chem_comp.formula_weight    461.546 
_chem_comp.id                1II 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F01 C33 1II sing 1 n n 
F02 C34 1II sing 2 n n 
C33 C29 1II doub 3 n y 
C33 C31 1II sing 4 n y 
C32 C34 1II doub 5 n y 
C32 C28 1II sing 6 n y 
C29 C25 1II sing 7 n y 
C34 C30 1II sing 8 n y 
C31 C27 1II doub 9 n y 
C28 C21 1II doub 10 n y 
C30 C26 1II doub 11 n y 
C25 C20 1II doub 12 n y 
C27 C20 1II sing 13 n y 
C20 C17 1II sing 14 n n 
C21 C26 1II sing 15 n y 
C21 C17 1II sing 16 n n 
C17 C15 1II sing 17 n n 
C15 C13 1II sing 18 n n 
C12 C13 1II sing 19 n n 
C12 N04 1II sing 20 n n 
C11 N04 1II sing 21 n n 
C11 C09 1II sing 22 n n 
N04 C10 1II sing 23 n n 
C09 C07 1II sing 24 n n 
C10 C08 1II sing 25 n n 
C07 C08 1II sing 26 n n 
C07 N05 1II sing 27 n n 
N05 C14 1II sing 28 n n 
N05 C16 1II sing 29 n n 
C19 C14 1II doub 30 n y 
C19 C23 1II sing 31 n y 
O03 C16 1II doub 32 n n 
C14 C18 1II sing 33 n y 
C16 N06 1II sing 34 n n 
C23 C24 1II doub 35 n y 
C18 N06 1II sing 36 n n 
C18 C22 1II doub 37 n y 
C24 C22 1II sing 38 n y 
C07 H1 1II sing 39 n n 
C08 H2 1II sing 40 n n 
C08 H3 1II sing 41 n n 
C09 H4 1II sing 42 n n 
C09 H5 1II sing 43 n n 
C10 H6 1II sing 44 n n 
C10 H7 1II sing 45 n n 
C11 H8 1II sing 46 n n 
C11 H9 1II sing 47 n n 
C12 H10 1II sing 48 n n 
C12 H11 1II sing 49 n n 
C13 H12 1II sing 50 n n 
C13 H13 1II sing 51 n n 
C15 H14 1II sing 52 n n 
C15 H15 1II sing 53 n n 
C17 H16 1II sing 54 n n 
C19 H17 1II sing 55 n n 
C22 H18 1II sing 56 n n 
C23 H19 1II sing 57 n n 
C24 H20 1II sing 58 n n 
C25 H21 1II sing 59 n n 
C26 H22 1II sing 60 n n 
C27 H23 1II sing 61 n n 
C28 H24 1II sing 62 n n 
C29 H25 1II sing 63 n n 
C30 H26 1II sing 64 n n 
C31 H27 1II sing 65 n n 
C32 H28 1II sing 66 n n 
N06 H30 1II sing 67 n n 
#
_atom_sites.entry_id                     8ZYQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          E 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           1II 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1101 
_pdbx_nonpoly_scheme.auth_seq_num     701 
_pdbx_nonpoly_scheme.pdb_mon_id       1II 
_pdbx_nonpoly_scheme.auth_mon_id      UNL 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C07 1II . . . E 2 157.856 154.866 166.617 1 55.27 ? C07 1II 1101 B 1 
HETATM 2 C C08 1II . . . E 2 158.461 153.506 166.861 1 46.46 ? C08 1II 1101 B 1 
HETATM 3 C C09 1II . . . E 2 156.565 154.878 167.379 1 51.59 ? C09 1II 1101 B 1 
HETATM 4 C C10 1II . . . E 2 157.524 152.449 166.314 1 49.05 ? C10 1II 1101 B 1 
HETATM 5 C C11 1II . . . E 2 155.64 153.904 166.736 1 56.76 ? C11 1II 1101 B 1 
HETATM 6 C C12 1II . . . E 2 155.278 151.707 166.067 1 52.11 ? C12 1II 1101 B 1 
HETATM 7 C C13 1II . . . E 2 155.534 150.239 166.338 1 49.51 ? C13 1II 1101 B 1 
HETATM 8 C C14 1II . . . E 2 159.976 156.152 167.447 1 54.58 ? C14 1II 1101 B 1 
HETATM 9 C C15 1II . . . E 2 154.28 149.459 165.97 1 53.3 ? C15 1II 1101 B 1 
HETATM 10 C C16 1II . . . E 2 158.241 157.277 166.962 1 64.26 ? C16 1II 1101 B 1 
HETATM 11 C C17 1II . . . E 2 154.089 148.416 167.054 1 53.33 ? C17 1II 1101 B 1 
HETATM 12 C C18 1II . . . E 2 160.238 157.444 167.65 1 57.96 ? C18 1II 1101 B 1 
HETATM 13 C C19 1II . . . E 2 160.927 155.266 167.687 1 51.45 ? C19 1II 1101 B 1 
HETATM 14 C C20 1II . . . E 2 154.342 147.136 166.559 1 54.14 ? C20 1II 1101 B 1 
HETATM 15 C C21 1II . . . E 2 152.8 148.507 167.598 1 56.24 ? C21 1II 1101 B 1 
HETATM 16 C C22 1II . . . E 2 161.414 157.872 168.093 1 56.87 ? C22 1II 1101 B 1 
HETATM 17 C C23 1II . . . E 2 162.169 155.66 168.147 1 48.53 ? C23 1II 1101 B 1 
HETATM 18 C C24 1II . . . E 2 162.438 156.992 168.363 1 54.86 ? C24 1II 1101 B 1 
HETATM 19 C C25 1II . . . E 2 153.565 146.553 165.57 1 64.5 ? C25 1II 1101 B 1 
HETATM 20 C C26 1II . . . E 2 152.184 147.39 168.134 1 55.18 ? C26 1II 1101 B 1 
HETATM 21 C C27 1II . . . E 2 155.415 146.439 167.089 1 53.58 ? C27 1II 1101 B 1 
HETATM 22 C C28 1II . . . E 2 152.133 149.72 167.645 1 58.93 ? C28 1II 1101 B 1 
HETATM 23 C C29 1II . . . E 2 153.867 145.272 165.137 1 70.5 ? C29 1II 1101 B 1 
HETATM 24 C C30 1II . . . E 2 150.928 147.453 168.702 1 47.76 ? C30 1II 1101 B 1 
HETATM 25 C C31 1II . . . E 2 155.717 145.159 166.657 1 59.56 ? C31 1II 1101 B 1 
HETATM 26 C C32 1II . . . E 2 150.866 149.789 168.212 1 54.13 ? C32 1II 1101 B 1 
HETATM 27 C C33 1II . . . E 2 154.936 144.579 165.676 1 70.59 ? C33 1II 1101 B 1 
HETATM 28 C C34 1II . . . E 2 150.272 148.656 168.74 1 50.6 ? C34 1II 1101 B 1 
HETATM 29 F F01 1II . . . E 2 155.205 143.395 165.262 1 83.17 ? F01 1II 1101 B 1 
HETATM 30 F F02 1II . . . E 2 149.187 148.7 169.225 1 64.09 ? F02 1II 1101 B 1 
HETATM 31 N N04 1II . . . E 2 156.166 152.547 166.866 1 56.97 ? N04 1II 1101 B 1 
HETATM 32 N N05 1II . . . E 2 158.716 156.036 167.013 1 57.23 ? N05 1II 1101 B 1 
HETATM 33 N N06 1II . . . E 2 159.159 158.139 167.346 1 62.98 ? N06 1II 1101 B 1 
HETATM 34 O O03 1II . . . E 2 157.114 157.626 166.614 1 66.55 ? O03 1II 1101 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           367 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           34 
#