data_9ARQ # _model_server_result.job_id FaseYYFLcO-y7FLRi-bGlA _model_server_result.datetime_utc '2024-11-22 12:35:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9arq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9ARQ # _exptl.entry_id 9ARQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 655.704 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1S,2S)-1-(4-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ARQ _cell.length_a 45.627 _cell.length_b 63.997 _cell.length_c 105.646 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ARQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -63.997 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id T2L _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id T2L _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.898 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H37 F4 N5 O5 S' _chem_comp.formula_weight 655.704 _chem_comp.id T2L _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1S,2S)-1-(4-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAL CD1 T2L doub 290 n n CD1 NAE T2L sing 291 n n CD1 CG T2L sing 292 n n NAE CAD T2L sing 293 n n CB CG T2L sing 294 n n CB CA T2L sing 295 n n CG CD2 T2L sing 296 n n O C T2L sing 297 n n CAD CD2 T2L sing 298 n n C CA T2L sing 299 n n C CBI T2L sing 300 n n CA N T2L sing 301 n n N CAJ T2L sing 302 n n FAW CAV T2L sing 303 n n OBE CAR T2L doub 304 n n CBI SBM T2L sing 305 n y CBI NBJ T2L doub 306 n y SBM CBL T2L sing 307 n y CAV FAY T2L sing 308 n n CAV FAX T2L sing 309 n n CAV CAU T2L sing 310 n n CAJ CAM T2L sing 311 n n CAJ OAK T2L doub 312 n n CBC CBA T2L sing 313 n n CAM NAN T2L sing 314 n n CAM CAQ T2L sing 315 n n CAR NAN T2L sing 316 n n CAR CAS T2L sing 317 n n NAT CAU T2L sing 318 n n NAT CAS T2L sing 319 n n NBJ CBK T2L sing 320 n y CBG CBF T2L sing 321 n n NAN CAO T2L sing 322 n n CAU OAZ T2L doub 323 n n CAQ CBF T2L sing 324 n n CAQ CAP T2L sing 325 n n CAS CBA T2L sing 326 n n CBA CBB T2L sing 327 n n CBA CBD T2L sing 328 n n CBL CBK T2L doub 329 n y CBL CBQ T2L sing 330 n y CBF CBH T2L sing 331 n n CBF CAP T2L sing 332 n n CBK CBN T2L sing 333 n y CAO CAP T2L sing 334 n n CBQ CBP T2L doub 335 n y CBN FBS T2L sing 336 n n CBN CBO T2L doub 337 n y CBP CBO T2L sing 338 n y CBO H1 T2L sing 339 n n CBP H2 T2L sing 340 n n CBQ H3 T2L sing 341 n n C H4 T2L sing 342 n n O H5 T2L sing 343 n n CA H6 T2L sing 344 n n CB H7 T2L sing 345 n n CB H8 T2L sing 346 n n CG H9 T2L sing 347 n n CD2 H10 T2L sing 348 n n CD2 H11 T2L sing 349 n n CAD H12 T2L sing 350 n n CAD H13 T2L sing 351 n n NAE H14 T2L sing 352 n n N H15 T2L sing 353 n n CAM H16 T2L sing 354 n n CAQ H17 T2L sing 355 n n CBG H18 T2L sing 356 n n CBG H19 T2L sing 357 n n CBG H20 T2L sing 358 n n CBH H21 T2L sing 359 n n CBH H22 T2L sing 360 n n CBH H23 T2L sing 361 n n CAP H24 T2L sing 362 n n CAO H25 T2L sing 363 n n CAO H26 T2L sing 364 n n CAS H27 T2L sing 365 n n CBC H28 T2L sing 366 n n CBC H29 T2L sing 367 n n CBC H30 T2L sing 368 n n CBD H31 T2L sing 369 n n CBD H32 T2L sing 370 n n CBD H33 T2L sing 371 n n CBB H34 T2L sing 372 n n CBB H35 T2L sing 373 n n CBB H36 T2L sing 374 n n NAT H37 T2L sing 375 n n # _atom_sites.entry_id 9ARQ _atom_sites.fract_transf_matrix[1][1] 0.021917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T2L A 1 401 1 T2L DRG . C 3 HOH A 1 501 17 HOH HOH . C 3 HOH A 2 502 18 HOH HOH . C 3 HOH A 3 503 62 HOH HOH . C 3 HOH A 4 504 102 HOH HOH . C 3 HOH A 5 505 54 HOH HOH . C 3 HOH A 6 506 28 HOH HOH . C 3 HOH A 7 507 89 HOH HOH . C 3 HOH A 8 508 14 HOH HOH . C 3 HOH A 9 509 58 HOH HOH . C 3 HOH A 10 510 46 HOH HOH . C 3 HOH A 11 511 90 HOH HOH . C 3 HOH A 12 512 32 HOH HOH . C 3 HOH A 13 513 59 HOH HOH . C 3 HOH A 14 514 33 HOH HOH . C 3 HOH A 15 515 60 HOH HOH . C 3 HOH A 16 516 36 HOH HOH . C 3 HOH A 17 517 30 HOH HOH . C 3 HOH A 18 518 29 HOH HOH . C 3 HOH A 19 519 88 HOH HOH . C 3 HOH A 20 520 5 HOH HOH . C 3 HOH A 21 521 4 HOH HOH . C 3 HOH A 22 522 51 HOH HOH . C 3 HOH A 23 523 97 HOH HOH . C 3 HOH A 24 524 78 HOH HOH . C 3 HOH A 25 525 81 HOH HOH . C 3 HOH A 26 526 9 HOH HOH . C 3 HOH A 27 527 12 HOH HOH . C 3 HOH A 28 528 31 HOH HOH . C 3 HOH A 29 529 87 HOH HOH . C 3 HOH A 30 530 45 HOH HOH . C 3 HOH A 31 531 69 HOH HOH . C 3 HOH A 32 532 22 HOH HOH . C 3 HOH A 33 533 1 HOH HOH . C 3 HOH A 34 534 23 HOH HOH . C 3 HOH A 35 535 48 HOH HOH . C 3 HOH A 36 536 38 HOH HOH . C 3 HOH A 37 537 19 HOH HOH . C 3 HOH A 38 538 98 HOH HOH . C 3 HOH A 39 539 70 HOH HOH . C 3 HOH A 40 540 37 HOH HOH . C 3 HOH A 41 541 43 HOH HOH . C 3 HOH A 42 542 16 HOH HOH . C 3 HOH A 43 543 77 HOH HOH . C 3 HOH A 44 544 71 HOH HOH . C 3 HOH A 45 545 6 HOH HOH . C 3 HOH A 46 546 7 HOH HOH . C 3 HOH A 47 547 15 HOH HOH . C 3 HOH A 48 548 63 HOH HOH . C 3 HOH A 49 549 41 HOH HOH . C 3 HOH A 50 550 100 HOH HOH . C 3 HOH A 51 551 26 HOH HOH . C 3 HOH A 52 552 79 HOH HOH . C 3 HOH A 53 553 74 HOH HOH . C 3 HOH A 54 554 40 HOH HOH . C 3 HOH A 55 555 11 HOH HOH . C 3 HOH A 56 556 2 HOH HOH . C 3 HOH A 57 557 53 HOH HOH . C 3 HOH A 58 558 94 HOH HOH . C 3 HOH A 59 559 99 HOH HOH . C 3 HOH A 60 560 21 HOH HOH . C 3 HOH A 61 561 10 HOH HOH . C 3 HOH A 62 562 20 HOH HOH . C 3 HOH A 63 563 35 HOH HOH . C 3 HOH A 64 564 34 HOH HOH . C 3 HOH A 65 565 8 HOH HOH . C 3 HOH A 66 566 44 HOH HOH . C 3 HOH A 67 567 13 HOH HOH . C 3 HOH A 68 568 61 HOH HOH . C 3 HOH A 69 569 55 HOH HOH . C 3 HOH A 70 570 95 HOH HOH . C 3 HOH A 71 571 27 HOH HOH . C 3 HOH A 72 572 39 HOH HOH . C 3 HOH A 73 573 91 HOH HOH . C 3 HOH A 74 574 49 HOH HOH . C 3 HOH A 75 575 92 HOH HOH . C 3 HOH A 76 576 96 HOH HOH . C 3 HOH A 77 577 64 HOH HOH . C 3 HOH A 78 578 80 HOH HOH . C 3 HOH A 79 579 56 HOH HOH . C 3 HOH A 80 580 52 HOH HOH . C 3 HOH A 81 581 50 HOH HOH . C 3 HOH A 82 582 83 HOH HOH . C 3 HOH A 83 583 86 HOH HOH . C 3 HOH A 84 584 68 HOH HOH . C 3 HOH A 85 585 25 HOH HOH . C 3 HOH A 86 586 47 HOH HOH . C 3 HOH A 87 587 75 HOH HOH . C 3 HOH A 88 588 24 HOH HOH . C 3 HOH A 89 589 85 HOH HOH . C 3 HOH A 90 590 101 HOH HOH . C 3 HOH A 91 591 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NBJ T2L . . . B 2 19.659 -18.629 -30.461 1 35.49 ? NBJ T2L 401 A 1 HETATM 2 C CBK T2L . . . B 2 20.786 -18.691 -31.218 1 39.36 ? CBK T2L 401 A 1 HETATM 3 C CBN T2L . . . B 2 21.76 -17.77 -31.394 1 43.89 ? CBN T2L 401 A 1 HETATM 4 F FBS T2L . . . B 2 21.743 -16.717 -30.862 1 43.16 ? FBS T2L 401 A 1 HETATM 5 C CBO T2L . . . B 2 22.867 -17.99 -32.2 1 45.5 ? CBO T2L 401 A 1 HETATM 6 C CBP T2L . . . B 2 22.977 -19.199 -32.863 1 53.1 ? CBP T2L 401 A 1 HETATM 7 C CBQ T2L . . . B 2 21.95 -20.138 -32.701 1 55.51 ? CBQ T2L 401 A 1 HETATM 8 C CBL T2L . . . B 2 20.909 -19.874 -31.894 1 49.59 ? CBL T2L 401 A 1 HETATM 9 S SBM T2L . . . B 2 19.593 -20.853 -31.611 1 41.92 ? SBM T2L 401 A 1 HETATM 10 C CBI T2L . . . B 2 18.863 -19.71 -30.531 1 34.87 ? CBI T2L 401 A 1 HETATM 11 C C T2L . . . B 2 17.744 -20.068 -29.855 1 28.26 ? C T2L 401 A 1 HETATM 12 O O T2L . . . B 2 17.298 -21.184 -30.154 1 22.6 ? O T2L 401 A 1 HETATM 13 C CA T2L . . . B 2 17.951 -19.912 -28.318 1 23.24 ? CA T2L 401 A 1 HETATM 14 C CB T2L . . . B 2 16.826 -20.689 -27.569 1 26.78 ? CB T2L 401 A 1 HETATM 15 C CG T2L . . . B 2 17.206 -20.818 -26.041 1 26 ? CG T2L 401 A 1 HETATM 16 C CD2 T2L . . . B 2 18.534 -21.568 -25.828 1 25.19 ? CD2 T2L 401 A 1 HETATM 17 C CAD T2L . . . B 2 18.256 -22.352 -24.535 1 27.43 ? CAD T2L 401 A 1 HETATM 18 N NAE T2L . . . B 2 16.769 -22.362 -24.421 1 29.57 ? NAE T2L 401 A 1 HETATM 19 C CD1 T2L . . . B 2 16.226 -21.51 -25.281 1 27.66 ? CD1 T2L 401 A 1 HETATM 20 O OAL T2L . . . B 2 15.014 -21.27 -25.282 1 25.3 ? OAL T2L 401 A 1 HETATM 21 N N T2L . . . B 2 18.063 -18.526 -27.872 1 21.92 ? N T2L 401 A 1 HETATM 22 C CAJ T2L . . . B 2 19.167 -18.023 -27.297 1 23.51 ? CAJ T2L 401 A 1 HETATM 23 O OAK T2L . . . B 2 20.145 -18.699 -27.155 1 21.2 ? OAK T2L 401 A 1 HETATM 24 C CAM T2L . . . B 2 19.129 -16.615 -26.91 1 24.64 ? CAM T2L 401 A 1 HETATM 25 C CAQ T2L . . . B 2 19.8 -15.712 -27.949 1 23.13 ? CAQ T2L 401 A 1 HETATM 26 C CBF T2L . . . B 2 19.84 -14.216 -27.741 1 26.91 ? CBF T2L 401 A 1 HETATM 27 C CBG T2L . . . B 2 18.842 -13.572 -26.723 1 26.08 ? CBG T2L 401 A 1 HETATM 28 C CBH T2L . . . B 2 19.966 -13.355 -29.025 1 28.5 ? CBH T2L 401 A 1 HETATM 29 C CAP T2L . . . B 2 21.02 -15.115 -27.306 1 23.98 ? CAP T2L 401 A 1 HETATM 30 C CAO T2L . . . B 2 21.092 -15.502 -25.875 1 23.93 ? CAO T2L 401 A 1 HETATM 31 N NAN T2L . . . B 2 19.8 -16.315 -25.65 1 22.77 ? NAN T2L 401 A 1 HETATM 32 C CAR T2L . . . B 2 19.226 -16.833 -24.58 1 22.97 ? CAR T2L 401 A 1 HETATM 33 O OBE T2L . . . B 2 18.202 -17.519 -24.616 1 22.45 ? OBE T2L 401 A 1 HETATM 34 C CAS T2L . . . B 2 19.995 -16.576 -23.287 1 22.75 ? CAS T2L 401 A 1 HETATM 35 C CBA T2L . . . B 2 20.581 -17.848 -22.678 1 23.05 ? CBA T2L 401 A 1 HETATM 36 C CBC T2L . . . B 2 21.454 -18.475 -23.712 1 23.93 ? CBC T2L 401 A 1 HETATM 37 C CBD T2L . . . B 2 19.482 -18.832 -22.163 1 23.47 ? CBD T2L 401 A 1 HETATM 38 C CBB T2L . . . B 2 21.5 -17.489 -21.486 1 24.86 ? CBB T2L 401 A 1 HETATM 39 N NAT T2L . . . B 2 19.078 -15.899 -22.389 1 24.41 ? NAT T2L 401 A 1 HETATM 40 C CAU T2L . . . B 2 19.379 -14.673 -21.93 1 31.28 ? CAU T2L 401 A 1 HETATM 41 O OAZ T2L . . . B 2 20.469 -14.117 -22.139 1 31.54 ? OAZ T2L 401 A 1 HETATM 42 C CAV T2L . . . B 2 18.281 -14.007 -21.042 1 36.03 ? CAV T2L 401 A 1 HETATM 43 F FAX T2L . . . B 2 18.26 -14.444 -19.896 1 41.57 ? FAX T2L 401 A 1 HETATM 44 F FAY T2L . . . B 2 17.128 -14.263 -21.457 1 40.65 ? FAY T2L 401 A 1 HETATM 45 F FAW T2L . . . B 2 18.448 -12.778 -21.078 1 39.72 ? FAW T2L 401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 45 #