data_9ARS # _model_server_result.job_id 2cCWSv5Kwav6hwl34k0TQg _model_server_result.datetime_utc '2024-11-25 07:03:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ars # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 9ARS # _exptl.entry_id 9ARS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 655.704 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1S,2S)-1-(4-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.38 _cell.angle_gamma 90 _cell.entry_id 9ARS _cell.length_a 45.931 _cell.length_b 53.951 _cell.length_c 114.966 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ARS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C T2L . A T2L 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C T2L . B T2L 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? # _chem_comp.formula 'C30 H37 F4 N5 O5 S' _chem_comp.formula_weight 655.704 _chem_comp.id T2L _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1S,2S)-1-(4-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAL CD1 T2L doub 290 n n CD1 NAE T2L sing 291 n n CD1 CG T2L sing 292 n n NAE CAD T2L sing 293 n n CB CG T2L sing 294 n n CB CA T2L sing 295 n n CG CD2 T2L sing 296 n n O C T2L sing 297 n n CAD CD2 T2L sing 298 n n C CA T2L sing 299 n n C CBI T2L sing 300 n n CA N T2L sing 301 n n N CAJ T2L sing 302 n n FAW CAV T2L sing 303 n n OBE CAR T2L doub 304 n n CBI SBM T2L sing 305 n y CBI NBJ T2L doub 306 n y SBM CBL T2L sing 307 n y CAV FAY T2L sing 308 n n CAV FAX T2L sing 309 n n CAV CAU T2L sing 310 n n CAJ CAM T2L sing 311 n n CAJ OAK T2L doub 312 n n CBC CBA T2L sing 313 n n CAM NAN T2L sing 314 n n CAM CAQ T2L sing 315 n n CAR NAN T2L sing 316 n n CAR CAS T2L sing 317 n n NAT CAU T2L sing 318 n n NAT CAS T2L sing 319 n n NBJ CBK T2L sing 320 n y CBG CBF T2L sing 321 n n NAN CAO T2L sing 322 n n CAU OAZ T2L doub 323 n n CAQ CBF T2L sing 324 n n CAQ CAP T2L sing 325 n n CAS CBA T2L sing 326 n n CBA CBB T2L sing 327 n n CBA CBD T2L sing 328 n n CBL CBK T2L doub 329 n y CBL CBQ T2L sing 330 n y CBF CBH T2L sing 331 n n CBF CAP T2L sing 332 n n CBK CBN T2L sing 333 n y CAO CAP T2L sing 334 n n CBQ CBP T2L doub 335 n y CBN FBS T2L sing 336 n n CBN CBO T2L doub 337 n y CBP CBO T2L sing 338 n y CBO H1 T2L sing 339 n n CBP H2 T2L sing 340 n n CBQ H3 T2L sing 341 n n C H4 T2L sing 342 n n O H5 T2L sing 343 n n CA H6 T2L sing 344 n n CB H7 T2L sing 345 n n CB H8 T2L sing 346 n n CG H9 T2L sing 347 n n CD2 H10 T2L sing 348 n n CD2 H11 T2L sing 349 n n CAD H12 T2L sing 350 n n CAD H13 T2L sing 351 n n NAE H14 T2L sing 352 n n N H15 T2L sing 353 n n CAM H16 T2L sing 354 n n CAQ H17 T2L sing 355 n n CBG H18 T2L sing 356 n n CBG H19 T2L sing 357 n n CBG H20 T2L sing 358 n n CBH H21 T2L sing 359 n n CBH H22 T2L sing 360 n n CBH H23 T2L sing 361 n n CAP H24 T2L sing 362 n n CAO H25 T2L sing 363 n n CAO H26 T2L sing 364 n n CAS H27 T2L sing 365 n n CBC H28 T2L sing 366 n n CBC H29 T2L sing 367 n n CBC H30 T2L sing 368 n n CBD H31 T2L sing 369 n n CBD H32 T2L sing 370 n n CBD H33 T2L sing 371 n n CBB H34 T2L sing 372 n n CBB H35 T2L sing 373 n n CBB H36 T2L sing 374 n n NAT H37 T2L sing 375 n n # _atom_sites.entry_id 9ARS _atom_sites.fract_transf_matrix[1][1] 0.021772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003988 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 T2L A 1 401 1 T2L DRG . D 2 T2L B 1 401 2 T2L DRG . E 3 HOH A 1 501 18 HOH HOH . E 3 HOH A 2 502 31 HOH HOH . E 3 HOH A 3 503 24 HOH HOH . E 3 HOH A 4 504 41 HOH HOH . E 3 HOH A 5 505 26 HOH HOH . E 3 HOH A 6 506 17 HOH HOH . E 3 HOH A 7 507 1 HOH HOH . E 3 HOH A 8 508 27 HOH HOH . E 3 HOH A 9 509 5 HOH HOH . E 3 HOH A 10 510 3 HOH HOH . E 3 HOH A 11 511 2 HOH HOH . E 3 HOH A 12 512 8 HOH HOH . E 3 HOH A 13 513 34 HOH HOH . F 3 HOH B 1 501 14 HOH HOH . F 3 HOH B 2 502 12 HOH HOH . F 3 HOH B 3 503 9 HOH HOH . F 3 HOH B 4 504 6 HOH HOH . F 3 HOH B 5 505 10 HOH HOH . F 3 HOH B 6 506 25 HOH HOH . F 3 HOH B 7 507 4 HOH HOH . F 3 HOH B 8 508 16 HOH HOH . F 3 HOH B 9 509 28 HOH HOH . F 3 HOH B 10 510 7 HOH HOH . F 3 HOH B 11 511 19 HOH HOH . F 3 HOH B 12 512 39 HOH HOH . F 3 HOH B 13 513 13 HOH HOH . F 3 HOH B 14 514 21 HOH HOH . F 3 HOH B 15 515 35 HOH HOH . F 3 HOH B 16 516 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NBJ T2L . . . D 2 37.203 3.603 40.209 1 46.05 ? NBJ T2L 401 B 1 HETATM 2 C CBK T2L . . . D 2 38.099 4.298 40.954 1 54.16 ? CBK T2L 401 B 1 HETATM 3 C CBN T2L . . . D 2 39.43 4.538 40.705 1 54.61 ? CBN T2L 401 B 1 HETATM 4 F FBS T2L . . . D 2 40.077 4.074 39.554 1 50.16 ? FBS T2L 401 B 1 HETATM 5 C CBO T2L . . . D 2 40.237 5.248 41.589 1 52.61 ? CBO T2L 401 B 1 HETATM 6 C CBP T2L . . . D 2 39.656 5.739 42.739 1 55.02 ? CBP T2L 401 B 1 HETATM 7 C CBQ T2L . . . D 2 38.299 5.488 42.968 1 55.38 ? CBQ T2L 401 B 1 HETATM 8 C CBL T2L . . . D 2 37.541 4.788 42.1 1 55.56 ? CBL T2L 401 B 1 HETATM 9 S SBM T2L . . . D 2 35.845 4.32 42.153 1 44.48 ? SBM T2L 401 B 1 HETATM 10 C CBI T2L . . . D 2 35.947 3.508 40.661 1 45.36 ? CBI T2L 401 B 1 HETATM 11 C C T2L . . . D 2 35.025 2.858 39.914 1 43.64 ? C T2L 401 B 1 HETATM 12 O O T2L . . . D 2 34.621 3.396 38.884 1 42.02 ? O T2L 401 B 1 HETATM 13 C CA T2L . . . D 2 35.124 1.301 39.913 1 41.34 ? CA T2L 401 B 1 HETATM 14 C CB T2L . . . D 2 34.046 0.695 39.061 1 39.14 ? CB T2L 401 B 1 HETATM 15 C CG T2L . . . D 2 34.477 -0.752 38.716 1 47.8 ? CG T2L 401 B 1 HETATM 16 C CD2 T2L . . . D 2 35.508 -0.71 37.644 1 51.74 ? CD2 T2L 401 B 1 HETATM 17 C CAD T2L . . . D 2 35.394 -2.131 37.087 1 50.29 ? CAD T2L 401 B 1 HETATM 18 N NAE T2L . . . D 2 33.934 -2.369 37.168 1 50.29 ? NAE T2L 401 B 1 HETATM 19 C CD1 T2L . . . D 2 33.438 -1.554 38.123 1 48.05 ? CD1 T2L 401 B 1 HETATM 20 O OAL T2L . . . D 2 32.242 -1.555 38.461 1 45.35 ? OAL T2L 401 B 1 HETATM 21 N N T2L . . . D 2 35.125 0.783 41.318 1 40.86 ? N T2L 401 B 1 HETATM 22 C CAJ T2L . . . D 2 36.255 0.278 41.885 1 40.74 ? CAJ T2L 401 B 1 HETATM 23 O OAK T2L . . . D 2 37.313 0.262 41.287 1 44.52 ? OAK T2L 401 B 1 HETATM 24 C CAM T2L . . . D 2 36.198 -0.202 43.237 1 39.94 ? CAM T2L 401 B 1 HETATM 25 C CAQ T2L . . . D 2 36.803 0.823 44.21 1 38.37 ? CAQ T2L 401 B 1 HETATM 26 C CBF T2L . . . D 2 36.853 0.559 45.719 1 38.56 ? CBF T2L 401 B 1 HETATM 27 C CBG T2L . . . D 2 35.955 -0.547 46.256 1 37.11 ? CBG T2L 401 B 1 HETATM 28 C CBH T2L . . . D 2 36.86 1.817 46.616 1 38.86 ? CBH T2L 401 B 1 HETATM 29 C CAP T2L . . . D 2 38.065 0.223 44.811 1 36.81 ? CAP T2L 401 B 1 HETATM 30 C CAO T2L . . . D 2 38.281 -1.134 44.25 1 37 ? CAO T2L 401 B 1 HETATM 31 N NAN T2L . . . D 2 37.012 -1.41 43.45 1 36.37 ? NAN T2L 401 B 1 HETATM 32 C CAR T2L . . . D 2 36.595 -2.524 42.9 1 38.8 ? CAR T2L 401 B 1 HETATM 33 O OBE T2L . . . D 2 35.56 -2.558 42.253 1 39.85 ? OBE T2L 401 B 1 HETATM 34 C CAS T2L . . . D 2 37.455 -3.798 43.135 1 47.91 ? CAS T2L 401 B 1 HETATM 35 C CBA T2L . . . D 2 38.184 -4.309 41.881 1 50.31 ? CBA T2L 401 B 1 HETATM 36 C CBC T2L . . . D 2 37.273 -4.673 40.7 1 43.68 ? CBC T2L 401 B 1 HETATM 37 C CBD T2L . . . D 2 38.952 -5.581 42.315 1 52.72 ? CBD T2L 401 B 1 HETATM 38 C CBB T2L . . . D 2 39.159 -3.212 41.443 1 51.66 ? CBB T2L 401 B 1 HETATM 39 N NAT T2L . . . D 2 36.597 -4.853 43.711 1 47.83 ? NAT T2L 401 B 1 HETATM 40 C CAU T2L . . . D 2 36.794 -5.268 44.966 1 52.67 ? CAU T2L 401 B 1 HETATM 41 O OAZ T2L . . . D 2 37.673 -4.808 45.687 1 47.66 ? OAZ T2L 401 B 1 HETATM 42 C CAV T2L . . . D 2 35.758 -6.301 45.488 1 57.88 ? CAV T2L 401 B 1 HETATM 43 F FAX T2L . . . D 2 36.071 -6.788 46.765 1 59.02 ? FAX T2L 401 B 1 HETATM 44 F FAY T2L . . . D 2 35.59 -7.4 44.604 1 53.27 ? FAY T2L 401 B 1 HETATM 45 F FAW T2L . . . D 2 34.639 -5.624 45.562 1 63.61 ? FAW T2L 401 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 45 #