data_9AT0 # _model_server_result.job_id ae2kBONpwNonHiKyaFVNFQ _model_server_result.datetime_utc '2024-11-08 04:32:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9at0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 9AT0 # _exptl.entry_id 9AT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.62 _cell.angle_gamma 90 _cell.entry_id 9AT0 _cell.length_a 55.042 _cell.length_b 98.604 _cell.length_c 58.349 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 149 A CYS 145 1_555 C C25 A1AGX . A A1AGX 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.83 ? covale ? covale2 A SG CYS 149 A CYS 145 1_555 D C25 A1AGW . A A1AGW 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.809 ? covale ? covale3 B SG CYS 149 B CYS 145 1_555 E C25 A1AGX . B A1AGX 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.814 ? covale ? covale4 B SG CYS 149 B CYS 145 1_555 F C25 A1AGW . B A1AGW 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.801 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 409 n n C1 O2 MLT sing 410 n n C1 C2 MLT sing 411 n n C2 O3 MLT sing 412 n n C2 C3 MLT sing 413 n n C2 H2 MLT sing 414 n n O3 HO3 MLT sing 415 n n C3 C4 MLT sing 416 n n C3 H31 MLT sing 417 n n C3 H32 MLT sing 418 n n C4 O4 MLT doub 419 n n C4 O5 MLT sing 420 n n O5 HO5 MLT sing 421 n n O2 H6 MLT sing 422 n n # _atom_sites.entry_id 9AT0 _atom_sites.fract_transf_matrix[1][1] 0.018168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00577 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AGX A 1 401 1 A1AGX S27 . D 3 A1AGW A 1 402 2 A1AGW R27 . E 2 A1AGX B 1 401 3 A1AGX S27 . F 3 A1AGW B 1 402 4 A1AGW R27 . G 4 MLT B 1 403 1 MLT MLT . H 5 HOH A 1 501 229 HOH HOH . H 5 HOH A 2 502 140 HOH HOH . H 5 HOH A 3 503 15 HOH HOH . H 5 HOH A 4 504 149 HOH HOH . H 5 HOH A 5 505 22 HOH HOH . H 5 HOH A 6 506 134 HOH HOH . H 5 HOH A 7 507 105 HOH HOH . H 5 HOH A 8 508 126 HOH HOH . H 5 HOH A 9 509 168 HOH HOH . H 5 HOH A 10 510 74 HOH HOH . H 5 HOH A 11 511 65 HOH HOH . H 5 HOH A 12 512 70 HOH HOH . H 5 HOH A 13 513 29 HOH HOH . H 5 HOH A 14 514 96 HOH HOH . H 5 HOH A 15 515 120 HOH HOH . H 5 HOH A 16 516 197 HOH HOH . H 5 HOH A 17 517 24 HOH HOH . H 5 HOH A 18 518 27 HOH HOH . H 5 HOH A 19 519 66 HOH HOH . H 5 HOH A 20 520 227 HOH HOH . H 5 HOH A 21 521 101 HOH HOH . H 5 HOH A 22 522 26 HOH HOH . H 5 HOH A 23 523 64 HOH HOH . H 5 HOH A 24 524 54 HOH HOH . H 5 HOH A 25 525 46 HOH HOH . H 5 HOH A 26 526 192 HOH HOH . H 5 HOH A 27 527 173 HOH HOH . H 5 HOH A 28 528 137 HOH HOH . H 5 HOH A 29 529 2 HOH HOH . H 5 HOH A 30 530 23 HOH HOH . H 5 HOH A 31 531 51 HOH HOH . H 5 HOH A 32 532 94 HOH HOH . H 5 HOH A 33 533 12 HOH HOH . H 5 HOH A 34 534 211 HOH HOH . H 5 HOH A 35 535 158 HOH HOH . H 5 HOH A 36 536 10 HOH HOH . H 5 HOH A 37 537 11 HOH HOH . H 5 HOH A 38 538 161 HOH HOH . H 5 HOH A 39 539 17 HOH HOH . H 5 HOH A 40 540 67 HOH HOH . H 5 HOH A 41 541 38 HOH HOH . H 5 HOH A 42 542 13 HOH HOH . H 5 HOH A 43 543 58 HOH HOH . H 5 HOH A 44 544 28 HOH HOH . H 5 HOH A 45 545 47 HOH HOH . H 5 HOH A 46 546 42 HOH HOH . H 5 HOH A 47 547 167 HOH HOH . H 5 HOH A 48 548 129 HOH HOH . H 5 HOH A 49 549 124 HOH HOH . H 5 HOH A 50 550 3 HOH HOH . H 5 HOH A 51 551 159 HOH HOH . H 5 HOH A 52 552 90 HOH HOH . H 5 HOH A 53 553 6 HOH HOH . H 5 HOH A 54 554 119 HOH HOH . H 5 HOH A 55 555 160 HOH HOH . H 5 HOH A 56 556 204 HOH HOH . H 5 HOH A 57 557 155 HOH HOH . H 5 HOH A 58 558 89 HOH HOH . H 5 HOH A 59 559 190 HOH HOH . H 5 HOH A 60 560 88 HOH HOH . H 5 HOH A 61 561 147 HOH HOH . H 5 HOH A 62 562 53 HOH HOH . H 5 HOH A 63 563 185 HOH HOH . H 5 HOH A 64 564 113 HOH HOH . H 5 HOH A 65 565 179 HOH HOH . H 5 HOH A 66 566 123 HOH HOH . H 5 HOH A 67 567 135 HOH HOH . H 5 HOH A 68 568 236 HOH HOH . H 5 HOH A 69 569 21 HOH HOH . H 5 HOH A 70 570 156 HOH HOH . H 5 HOH A 71 571 116 HOH HOH . H 5 HOH A 72 572 199 HOH HOH . H 5 HOH A 73 573 136 HOH HOH . H 5 HOH A 74 574 63 HOH HOH . H 5 HOH A 75 575 176 HOH HOH . H 5 HOH A 76 576 150 HOH HOH . H 5 HOH A 77 577 32 HOH HOH . H 5 HOH A 78 578 206 HOH HOH . H 5 HOH A 79 579 212 HOH HOH . H 5 HOH A 80 580 203 HOH HOH . H 5 HOH A 81 581 143 HOH HOH . H 5 HOH A 82 582 72 HOH HOH . H 5 HOH A 83 583 189 HOH HOH . H 5 HOH A 84 584 127 HOH HOH . H 5 HOH A 85 585 184 HOH HOH . I 5 HOH B 1 501 208 HOH HOH . I 5 HOH B 2 502 151 HOH HOH . I 5 HOH B 3 503 180 HOH HOH . I 5 HOH B 4 504 44 HOH HOH . I 5 HOH B 5 505 213 HOH HOH . I 5 HOH B 6 506 43 HOH HOH . I 5 HOH B 7 507 231 HOH HOH . I 5 HOH B 8 508 109 HOH HOH . I 5 HOH B 9 509 201 HOH HOH . I 5 HOH B 10 510 225 HOH HOH . I 5 HOH B 11 511 125 HOH HOH . I 5 HOH B 12 512 186 HOH HOH . I 5 HOH B 13 513 152 HOH HOH . I 5 HOH B 14 514 195 HOH HOH . I 5 HOH B 15 515 20 HOH HOH . I 5 HOH B 16 516 228 HOH HOH . I 5 HOH B 17 517 49 HOH HOH . I 5 HOH B 18 518 7 HOH HOH . I 5 HOH B 19 519 82 HOH HOH . I 5 HOH B 20 520 52 HOH HOH . I 5 HOH B 21 521 118 HOH HOH . I 5 HOH B 22 522 84 HOH HOH . I 5 HOH B 23 523 194 HOH HOH . I 5 HOH B 24 524 48 HOH HOH . I 5 HOH B 25 525 107 HOH HOH . I 5 HOH B 26 526 154 HOH HOH . I 5 HOH B 27 527 85 HOH HOH . I 5 HOH B 28 528 128 HOH HOH . I 5 HOH B 29 529 224 HOH HOH . I 5 HOH B 30 530 114 HOH HOH . I 5 HOH B 31 531 202 HOH HOH . I 5 HOH B 32 532 234 HOH HOH . I 5 HOH B 33 533 16 HOH HOH . I 5 HOH B 34 534 99 HOH HOH . I 5 HOH B 35 535 103 HOH HOH . I 5 HOH B 36 536 132 HOH HOH . I 5 HOH B 37 537 226 HOH HOH . I 5 HOH B 38 538 41 HOH HOH . I 5 HOH B 39 539 97 HOH HOH . I 5 HOH B 40 540 188 HOH HOH . I 5 HOH B 41 541 91 HOH HOH . I 5 HOH B 42 542 102 HOH HOH . I 5 HOH B 43 543 57 HOH HOH . I 5 HOH B 44 544 75 HOH HOH . I 5 HOH B 45 545 5 HOH HOH . I 5 HOH B 46 546 33 HOH HOH . I 5 HOH B 47 547 31 HOH HOH . I 5 HOH B 48 548 215 HOH HOH . I 5 HOH B 49 549 230 HOH HOH . I 5 HOH B 50 550 40 HOH HOH . I 5 HOH B 51 551 164 HOH HOH . I 5 HOH B 52 552 34 HOH HOH . I 5 HOH B 53 553 139 HOH HOH . I 5 HOH B 54 554 36 HOH HOH . I 5 HOH B 55 555 71 HOH HOH . I 5 HOH B 56 556 92 HOH HOH . I 5 HOH B 57 557 86 HOH HOH . I 5 HOH B 58 558 138 HOH HOH . I 5 HOH B 59 559 9 HOH HOH . I 5 HOH B 60 560 61 HOH HOH . I 5 HOH B 61 561 191 HOH HOH . I 5 HOH B 62 562 110 HOH HOH . I 5 HOH B 63 563 55 HOH HOH . I 5 HOH B 64 564 106 HOH HOH . I 5 HOH B 65 565 78 HOH HOH . I 5 HOH B 66 566 183 HOH HOH . I 5 HOH B 67 567 81 HOH HOH . I 5 HOH B 68 568 14 HOH HOH . I 5 HOH B 69 569 87 HOH HOH . I 5 HOH B 70 570 25 HOH HOH . I 5 HOH B 71 571 68 HOH HOH . I 5 HOH B 72 572 169 HOH HOH . I 5 HOH B 73 573 196 HOH HOH . I 5 HOH B 74 574 50 HOH HOH . I 5 HOH B 75 575 171 HOH HOH . I 5 HOH B 76 576 207 HOH HOH . I 5 HOH B 77 577 56 HOH HOH . I 5 HOH B 78 578 79 HOH HOH . I 5 HOH B 79 579 232 HOH HOH . I 5 HOH B 80 580 8 HOH HOH . I 5 HOH B 81 581 73 HOH HOH . I 5 HOH B 82 582 121 HOH HOH . I 5 HOH B 83 583 4 HOH HOH . I 5 HOH B 84 584 112 HOH HOH . I 5 HOH B 85 585 133 HOH HOH . I 5 HOH B 86 586 108 HOH HOH . I 5 HOH B 87 587 45 HOH HOH . I 5 HOH B 88 588 37 HOH HOH . I 5 HOH B 89 589 95 HOH HOH . I 5 HOH B 90 590 1 HOH HOH . I 5 HOH B 91 591 148 HOH HOH . I 5 HOH B 92 592 163 HOH HOH . I 5 HOH B 93 593 80 HOH HOH . I 5 HOH B 94 594 222 HOH HOH . I 5 HOH B 95 595 131 HOH HOH . I 5 HOH B 96 596 39 HOH HOH . I 5 HOH B 97 597 60 HOH HOH . I 5 HOH B 98 598 142 HOH HOH . I 5 HOH B 99 599 146 HOH HOH . I 5 HOH B 100 600 117 HOH HOH . I 5 HOH B 101 601 59 HOH HOH . I 5 HOH B 102 602 93 HOH HOH . I 5 HOH B 103 603 166 HOH HOH . I 5 HOH B 104 604 35 HOH HOH . I 5 HOH B 105 605 18 HOH HOH . I 5 HOH B 106 606 145 HOH HOH . I 5 HOH B 107 607 98 HOH HOH . I 5 HOH B 108 608 193 HOH HOH . I 5 HOH B 109 609 218 HOH HOH . I 5 HOH B 110 610 144 HOH HOH . I 5 HOH B 111 611 115 HOH HOH . I 5 HOH B 112 612 122 HOH HOH . I 5 HOH B 113 613 76 HOH HOH . I 5 HOH B 114 614 69 HOH HOH . I 5 HOH B 115 615 181 HOH HOH . I 5 HOH B 116 616 165 HOH HOH . I 5 HOH B 117 617 182 HOH HOH . I 5 HOH B 118 618 62 HOH HOH . I 5 HOH B 119 619 153 HOH HOH . I 5 HOH B 120 620 141 HOH HOH . I 5 HOH B 121 621 30 HOH HOH . I 5 HOH B 122 622 100 HOH HOH . I 5 HOH B 123 623 77 HOH HOH . I 5 HOH B 124 624 174 HOH HOH . I 5 HOH B 125 625 170 HOH HOH . I 5 HOH B 126 626 104 HOH HOH . I 5 HOH B 127 627 19 HOH HOH . I 5 HOH B 128 628 235 HOH HOH . I 5 HOH B 129 629 200 HOH HOH . I 5 HOH B 130 630 172 HOH HOH . I 5 HOH B 131 631 198 HOH HOH . I 5 HOH B 132 632 233 HOH HOH . I 5 HOH B 133 633 157 HOH HOH . I 5 HOH B 134 634 130 HOH HOH . I 5 HOH B 135 635 175 HOH HOH . I 5 HOH B 136 636 205 HOH HOH . I 5 HOH B 137 637 210 HOH HOH . I 5 HOH B 138 638 223 HOH HOH . I 5 HOH B 139 639 221 HOH HOH . I 5 HOH B 140 640 209 HOH HOH . I 5 HOH B 141 641 220 HOH HOH . I 5 HOH B 142 642 219 HOH HOH . I 5 HOH B 143 643 214 HOH HOH . I 5 HOH B 144 644 217 HOH HOH . I 5 HOH B 145 645 177 HOH HOH . I 5 HOH B 146 646 83 HOH HOH . I 5 HOH B 147 647 162 HOH HOH . I 5 HOH B 148 648 216 HOH HOH . I 5 HOH B 149 649 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . G 4 -5.649 -11.369 23.05 1 38.88 ? C1 MLT 403 B 1 HETATM 2 O O1 MLT . . . G 4 -5.29 -11.347 21.839 1 54.25 ? O1 MLT 403 B 1 HETATM 3 O O2 MLT . . . G 4 -6.054 -10.306 23.544 1 47.42 ? O2 MLT 403 B 1 HETATM 4 C C2 MLT . . . G 4 -5.661 -12.606 23.93 1 50.97 ? C2 MLT 403 B 1 HETATM 5 O O3 MLT . . . G 4 -5.452 -12.247 25.293 1 52.88 ? O3 MLT 403 B 1 HETATM 6 C C3 MLT . . . G 4 -4.716 -13.751 23.522 1 52.71 ? C3 MLT 403 B 1 HETATM 7 C C4 MLT . . . G 4 -5.051 -15.001 24.337 1 52.13 ? C4 MLT 403 B 1 HETATM 8 O O4 MLT . . . G 4 -5.341 -16.127 23.84 1 41.27 ? O4 MLT 403 B 1 HETATM 9 O O5 MLT . . . G 4 -5.079 -14.921 25.575 1 43.07 ? O5 MLT 403 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #