data_9AT2
#
_model_server_result.job_id            hcG8YDjiSicINTxuxUemBw 
_model_server_result.datetime_utc      '2024-12-02 02:17:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9at2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    9AT2 
#
_exptl.entry_id    9AT2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9AT2 
_cell.length_a            144.042 
_cell.length_b            155.112 
_cell.length_c            88.515 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9AT2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     9AT2 
_atom_sites.fract_transf_matrix[1][1]    0.006942 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011298 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 401 401 HEM HEM . 
F 3 ZIQ A 1 402 402 ZIQ ZIQ . 
G 4 A1AF5 A 1 403 403 A1AF5 22d . 
H 2 HEM B 1 401 401 HEM HEM . 
I 3 ZIQ B 1 402 402 ZIQ ZIQ . 
J 4 A1AF5 B 1 403 403 A1AF5 22d . 
K 2 HEM C 1 401 401 HEM HEM . 
L 3 ZIQ C 1 402 402 ZIQ ZIQ . 
M 4 A1AF5 C 1 403 403 A1AF5 22d . 
N 2 HEM D 1 401 401 HEM HEM . 
O 3 ZIQ D 1 402 402 ZIQ ZIQ . 
P 4 A1AF5 D 1 403 403 A1AF5 22d . 
Q 5 HOH A 1 501 17 HOH HOH . 
Q 5 HOH A 2 502 1 HOH HOH . 
Q 5 HOH A 3 503 18 HOH HOH . 
Q 5 HOH A 4 504 12 HOH HOH . 
Q 5 HOH A 5 505 14 HOH HOH . 
Q 5 HOH A 6 506 2 HOH HOH . 
Q 5 HOH A 7 507 21 HOH HOH . 
Q 5 HOH A 8 508 13 HOH HOH . 
R 5 HOH B 1 501 20 HOH HOH . 
R 5 HOH B 2 502 9 HOH HOH . 
R 5 HOH B 3 503 4 HOH HOH . 
R 5 HOH B 4 504 22 HOH HOH . 
R 5 HOH B 5 505 3 HOH HOH . 
R 5 HOH B 6 506 11 HOH HOH . 
R 5 HOH B 7 507 23 HOH HOH . 
R 5 HOH B 8 508 16 HOH HOH . 
R 5 HOH B 9 509 10 HOH HOH . 
S 5 HOH C 1 501 15 HOH HOH . 
S 5 HOH C 2 502 5 HOH HOH . 
S 5 HOH C 3 503 6 HOH HOH . 
T 5 HOH D 1 501 7 HOH HOH . 
T 5 HOH D 2 502 8 HOH HOH . 
T 5 HOH D 3 503 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 2 9.561 -58.963 -52.091 1 70.66 ? CHA HEM 401 B 1 
HETATM 2 C CHB HEM . . . H 2 11.533 -55.553 -54.91 1 82.53 ? CHB HEM 401 B 1 
HETATM 3 C CHC HEM . . . H 2 15.143 -55.111 -51.689 1 62.39 ? CHC HEM 401 B 1 
HETATM 4 C CHD HEM . . . H 2 13.599 -59.131 -49.457 1 72.72 ? CHD HEM 401 B 1 
HETATM 5 C C1A HEM . . . H 2 9.776 -58.055 -53.105 1 76.83 ? C1A HEM 401 B 1 
HETATM 6 C C2A HEM . . . H 2 8.908 -57.848 -54.196 1 86.7 ? C2A HEM 401 B 1 
HETATM 7 C C3A HEM . . . H 2 9.462 -56.906 -54.995 1 85.6 ? C3A HEM 401 B 1 
HETATM 8 C C4A HEM . . . H 2 10.684 -56.511 -54.402 1 84.81 ? C4A HEM 401 B 1 
HETATM 9 C CMA HEM . . . H 2 8.85 -56.358 -56.274 1 88.8 ? CMA HEM 401 B 1 
HETATM 10 C CAA HEM . . . H 2 7.584 -58.545 -54.43 1 93.39 ? CAA HEM 401 B 1 
HETATM 11 C CBA HEM . . . H 2 7.827 -59.894 -55.14 1 98.37 ? CBA HEM 401 B 1 
HETATM 12 C CGA HEM . . . H 2 8 -59.729 -56.644 1 99.45 ? CGA HEM 401 B 1 
HETATM 13 O O1A HEM . . . H 2 9.018 -60.155 -57.215 1 95.77 ? O1A HEM 401 B 1 
HETATM 14 O O2A HEM . . . H 2 7.133 -59.153 -57.344 1 103.61 ? O2A HEM 401 B 1 
HETATM 15 C C1B HEM . . . H 2 12.692 -55.123 -54.215 1 82.24 ? C1B HEM 401 B 1 
HETATM 16 C C2B HEM . . . H 2 13.508 -54.049 -54.661 1 68.32 ? C2B HEM 401 B 1 
HETATM 17 C C3B HEM . . . H 2 14.491 -53.875 -53.752 1 67.76 ? C3B HEM 401 B 1 
HETATM 18 C C4B HEM . . . H 2 14.308 -54.927 -52.765 1 65.03 ? C4B HEM 401 B 1 
HETATM 19 C CMB HEM . . . H 2 13.222 -53.241 -55.887 1 75.66 ? CMB HEM 401 B 1 
HETATM 20 C CAB HEM . . . H 2 15.664 -52.978 -53.715 1 70.54 ? CAB HEM 401 B 1 
HETATM 21 C CBB HEM . . . H 2 16.223 -52.472 -54.815 1 72.63 ? CBB HEM 401 B 1 
HETATM 22 C C1C HEM . . . H 2 15.067 -56.19 -50.816 1 67.99 ? C1C HEM 401 B 1 
HETATM 23 C C2C HEM . . . H 2 15.944 -56.447 -49.752 1 78.54 ? C2C HEM 401 B 1 
HETATM 24 C C3C HEM . . . H 2 15.509 -57.575 -49.107 1 71.29 ? C3C HEM 401 B 1 
HETATM 25 C C4C HEM . . . H 2 14.363 -58.036 -49.814 1 77.47 ? C4C HEM 401 B 1 
HETATM 26 C CMC HEM . . . H 2 17.146 -55.633 -49.348 1 81.45 ? CMC HEM 401 B 1 
HETATM 27 C CAC HEM . . . H 2 16.236 -58.194 -47.99 1 66.23 ? CAC HEM 401 B 1 
HETATM 28 C CBC HEM . . . H 2 16.271 -59.5 -47.835 1 65.39 ? CBC HEM 401 B 1 
HETATM 29 C C1D HEM . . . H 2 12.363 -59.366 -50.006 1 73.87 ? C1D HEM 401 B 1 
HETATM 30 C C2D HEM . . . H 2 11.487 -60.374 -49.456 1 68.81 ? C2D HEM 401 B 1 
HETATM 31 C C3D HEM . . . H 2 10.364 -60.351 -50.193 1 75.14 ? C3D HEM 401 B 1 
HETATM 32 C C4D HEM . . . H 2 10.532 -59.282 -51.173 1 70.17 ? C4D HEM 401 B 1 
HETATM 33 C CMD HEM . . . H 2 11.77 -61.304 -48.297 1 65.91 ? CMD HEM 401 B 1 
HETATM 34 C CAD HEM . . . H 2 9.151 -61.232 -49.954 1 77.14 ? CAD HEM 401 B 1 
HETATM 35 C CBD HEM . . . H 2 8.286 -60.379 -48.979 1 77.81 ? CBD HEM 401 B 1 
HETATM 36 C CGD HEM . . . H 2 6.922 -60.969 -48.636 1 81.77 ? CGD HEM 401 B 1 
HETATM 37 O O1D HEM . . . H 2 6.307 -61.707 -49.455 1 78.67 ? O1D HEM 401 B 1 
HETATM 38 O O2D HEM . . . H 2 6.39 -60.704 -47.519 1 70.56 ? O2D HEM 401 B 1 
HETATM 39 N NA HEM . . . H 2 10.862 -57.211 -53.25 1 83.63 ? NA HEM 401 B 1 
HETATM 40 N NB HEM . . . H 2 13.213 -55.618 -53.098 1 78.57 ? NB HEM 401 B 1 
HETATM 41 N NC HEM . . . H 2 14.136 -57.156 -50.84 1 68.18 ? NC HEM 401 B 1 
HETATM 42 N ND HEM . . . H 2 11.746 -58.713 -51.003 1 84.83 ? ND HEM 401 B 1 
HETATM 43 FE FE HEM . . . H 2 12.381 -57.188 -51.968 1 76.75 ? FE HEM 401 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#