data_9AT2 # _model_server_result.job_id IJtGMRjxQgGWNMfVjazHZQ _model_server_result.datetime_utc '2024-12-02 02:26:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9at2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 9AT2 # _exptl.entry_id 9AT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.429 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6M)-6-(1H-indol-3-yl)-1-[2-(piperazin-1-yl)ethyl]-1H-1,2,3-benzotriazole _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AT2 _cell.length_a 144.042 _cell.length_b 155.112 _cell.length_c 88.515 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C20 H22 N6' _chem_comp.formula_weight 346.429 _chem_comp.id A1AF5 _chem_comp.mon_nstd_flag . _chem_comp.name (6M)-6-(1H-indol-3-yl)-1-[2-(piperazin-1-yl)ethyl]-1H-1,2,3-benzotriazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C20 A1AF5 doub 1 n y C1 C2 A1AF5 sing 2 n y C20 C19 A1AF5 sing 3 n y C2 C3 A1AF5 doub 4 n y C19 N6 A1AF5 sing 5 n y C19 C4 A1AF5 doub 6 n y N6 C18 A1AF5 sing 7 n y C3 C4 A1AF5 sing 8 n y C4 C5 A1AF5 sing 9 n y C18 C5 A1AF5 doub 10 n y C5 C6 A1AF5 sing 11 n n C12 C13 A1AF5 sing 12 n n C12 N4 A1AF5 sing 13 n n C6 C17 A1AF5 doub 14 n y C6 C7 A1AF5 sing 15 n y C13 N5 A1AF5 sing 16 n n C17 C16 A1AF5 sing 17 n y N4 C15 A1AF5 sing 18 n n N4 C11 A1AF5 sing 19 n n C7 C8 A1AF5 doub 20 n y C15 C14 A1AF5 sing 21 n n C11 C10 A1AF5 sing 22 n n C10 N3 A1AF5 sing 23 n n C14 N5 A1AF5 sing 24 n n C16 N3 A1AF5 sing 25 n y C16 C9 A1AF5 doub 26 n y N3 N2 A1AF5 sing 27 n y C8 C9 A1AF5 sing 28 n y C9 N1 A1AF5 sing 29 n y N2 N1 A1AF5 doub 30 n y C1 H1 A1AF5 sing 31 n n C2 H2 A1AF5 sing 32 n n C3 H3 A1AF5 sing 33 n n C7 H4 A1AF5 sing 34 n n C8 H5 A1AF5 sing 35 n n C10 H6 A1AF5 sing 36 n n C10 H7 A1AF5 sing 37 n n C11 H8 A1AF5 sing 38 n n C11 H9 A1AF5 sing 39 n n C12 H11 A1AF5 sing 40 n n C12 H12 A1AF5 sing 41 n n C13 H13 A1AF5 sing 42 n n C13 H14 A1AF5 sing 43 n n N5 H15 A1AF5 sing 44 n n C14 H17 A1AF5 sing 45 n n C14 H18 A1AF5 sing 46 n n C15 H19 A1AF5 sing 47 n n C15 H20 A1AF5 sing 48 n n C17 H21 A1AF5 sing 49 n n C18 H22 A1AF5 sing 50 n n N6 H23 A1AF5 sing 51 n n C20 H24 A1AF5 sing 52 n n # _atom_sites.entry_id 9AT2 _atom_sites.fract_transf_matrix[1][1] 0.006942 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 ZIQ A 1 402 402 ZIQ ZIQ . G 4 A1AF5 A 1 403 403 A1AF5 22d . H 2 HEM B 1 401 401 HEM HEM . I 3 ZIQ B 1 402 402 ZIQ ZIQ . J 4 A1AF5 B 1 403 403 A1AF5 22d . K 2 HEM C 1 401 401 HEM HEM . L 3 ZIQ C 1 402 402 ZIQ ZIQ . M 4 A1AF5 C 1 403 403 A1AF5 22d . N 2 HEM D 1 401 401 HEM HEM . O 3 ZIQ D 1 402 402 ZIQ ZIQ . P 4 A1AF5 D 1 403 403 A1AF5 22d . Q 5 HOH A 1 501 17 HOH HOH . Q 5 HOH A 2 502 1 HOH HOH . Q 5 HOH A 3 503 18 HOH HOH . Q 5 HOH A 4 504 12 HOH HOH . Q 5 HOH A 5 505 14 HOH HOH . Q 5 HOH A 6 506 2 HOH HOH . Q 5 HOH A 7 507 21 HOH HOH . Q 5 HOH A 8 508 13 HOH HOH . R 5 HOH B 1 501 20 HOH HOH . R 5 HOH B 2 502 9 HOH HOH . R 5 HOH B 3 503 4 HOH HOH . R 5 HOH B 4 504 22 HOH HOH . R 5 HOH B 5 505 3 HOH HOH . R 5 HOH B 6 506 11 HOH HOH . R 5 HOH B 7 507 23 HOH HOH . R 5 HOH B 8 508 16 HOH HOH . R 5 HOH B 9 509 10 HOH HOH . S 5 HOH C 1 501 15 HOH HOH . S 5 HOH C 2 502 5 HOH HOH . S 5 HOH C 3 503 6 HOH HOH . T 5 HOH D 1 501 7 HOH HOH . T 5 HOH D 2 502 8 HOH HOH . T 5 HOH D 3 503 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1AF5 . . . G 4 38.165 -64.385 -35.581 1 76.97 ? C1 A1AF5 403 A 1 HETATM 2 C C2 A1AF5 . . . G 4 38.803 -65.135 -34.61 1 79.14 ? C2 A1AF5 403 A 1 HETATM 3 C C3 A1AF5 . . . G 4 39.127 -64.603 -33.379 1 80.75 ? C3 A1AF5 403 A 1 HETATM 4 C C4 A1AF5 . . . G 4 38.825 -63.265 -33.119 1 81.08 ? C4 A1AF5 403 A 1 HETATM 5 C C5 A1AF5 . . . G 4 39.019 -62.374 -32 1 85.54 ? C5 A1AF5 403 A 1 HETATM 6 C C6 A1AF5 . . . G 4 39.615 -62.681 -30.691 1 88.64 ? C6 A1AF5 403 A 1 HETATM 7 C C7 A1AF5 . . . G 4 39.208 -61.951 -29.548 1 92.53 ? C7 A1AF5 403 A 1 HETATM 8 C C8 A1AF5 . . . G 4 39.699 -62.208 -28.291 1 89.41 ? C8 A1AF5 403 A 1 HETATM 9 C C9 A1AF5 . . . G 4 40.619 -63.248 -28.158 1 102.42 ? C9 A1AF5 403 A 1 HETATM 10 N N1 A1AF5 . . . G 4 41.272 -63.741 -27.054 1 110.95 ? N1 A1AF5 403 A 1 HETATM 11 N N2 A1AF5 . . . G 4 42.032 -64.721 -27.453 1 125.84 ? N2 A1AF5 403 A 1 HETATM 12 N N3 A1AF5 . . . G 4 41.899 -64.88 -28.794 1 124.22 ? N3 A1AF5 403 A 1 HETATM 13 C C10 A1AF5 . . . G 4 42.647 -65.908 -29.499 1 137.02 ? C10 A1AF5 403 A 1 HETATM 14 C C11 A1AF5 . . . G 4 44.133 -65.603 -29.512 1 148.77 ? C11 A1AF5 403 A 1 HETATM 15 N N4 A1AF5 . . . G 4 44.456 -64.445 -30.334 1 153.86 ? N4 A1AF5 403 A 1 HETATM 16 C C12 A1AF5 . . . G 4 45.544 -64.763 -31.271 1 149.17 ? C12 A1AF5 403 A 1 HETATM 17 C C13 A1AF5 . . . G 4 46.813 -65.175 -30.553 1 148.28 ? C13 A1AF5 403 A 1 HETATM 18 N N5 A1AF5 . . . G 4 47.082 -64.326 -29.386 1 153.19 ? N5 A1AF5 403 A 1 HETATM 19 C C14 A1AF5 . . . G 4 46.32 -63.065 -29.463 1 157.65 ? C14 A1AF5 403 A 1 HETATM 20 C C15 A1AF5 . . . G 4 44.815 -63.274 -29.516 1 152.4 ? C15 A1AF5 403 A 1 HETATM 21 C C16 A1AF5 . . . G 4 41.015 -63.967 -29.283 1 108.97 ? C16 A1AF5 403 A 1 HETATM 22 C C17 A1AF5 . . . G 4 40.514 -63.685 -30.549 1 95.42 ? C17 A1AF5 403 A 1 HETATM 23 C C18 A1AF5 . . . G 4 38.473 -61.162 -32.372 1 90.49 ? C18 A1AF5 403 A 1 HETATM 24 N N6 A1AF5 . . . G 4 37.989 -61.24 -33.643 1 92.37 ? N6 A1AF5 403 A 1 HETATM 25 C C19 A1AF5 . . . G 4 38.176 -62.521 -34.124 1 82.95 ? C19 A1AF5 403 A 1 HETATM 26 C C20 A1AF5 . . . G 4 37.836 -63.072 -35.355 1 83.04 ? C20 A1AF5 403 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #