data_9AT9 # _model_server_result.job_id eYzfKaiu5T1bPHlMDxJXmg _model_server_result.datetime_utc '2025-07-02 07:04:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9at9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9AT9 # _exptl.entry_id 9AT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AT9 _cell.length_a 37.539 _cell.length_b 40.626 _cell.length_c 101.043 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 3 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 3 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 44 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 44 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.134 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 218 n n C1 O1 MAN sing 219 n n C1 O5 MAN sing 220 n n C1 H1 MAN sing 221 n n C2 C3 MAN sing 222 n n C2 O2 MAN sing 223 n n C2 H2 MAN sing 224 n n C3 C4 MAN sing 225 n n C3 O3 MAN sing 226 n n C3 H3 MAN sing 227 n n C4 C5 MAN sing 228 n n C4 O4 MAN sing 229 n n C4 H4 MAN sing 230 n n C5 C6 MAN sing 231 n n C5 O5 MAN sing 232 n n C5 H5 MAN sing 233 n n C6 O6 MAN sing 234 n n C6 H61 MAN sing 235 n n C6 H62 MAN sing 236 n n O1 HO1 MAN sing 237 n n O2 HO2 MAN sing 238 n n O3 HO3 MAN sing 239 n n O4 HO4 MAN sing 240 n n O6 HO6 MAN sing 241 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9AT9 _atom_sites.fract_transf_matrix[1][1] 0.026639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MAN B 1 201 201 MAN MAN . C 3 HOH B 1 301 143 HOH HOH . C 3 HOH B 2 302 86 HOH HOH . C 3 HOH B 3 303 67 HOH HOH . C 3 HOH B 4 304 98 HOH HOH . C 3 HOH B 5 305 54 HOH HOH . C 3 HOH B 6 306 6 HOH HOH . C 3 HOH B 7 307 19 HOH HOH . C 3 HOH B 8 308 9 HOH HOH . C 3 HOH B 9 309 55 HOH HOH . C 3 HOH B 10 310 58 HOH HOH . C 3 HOH B 11 311 12 HOH HOH . C 3 HOH B 12 312 10 HOH HOH . C 3 HOH B 13 313 13 HOH HOH . C 3 HOH B 14 314 111 HOH HOH . C 3 HOH B 15 315 7 HOH HOH . C 3 HOH B 16 316 15 HOH HOH . C 3 HOH B 17 317 94 HOH HOH . C 3 HOH B 18 318 36 HOH HOH . C 3 HOH B 19 319 3 HOH HOH . C 3 HOH B 20 320 11 HOH HOH . C 3 HOH B 21 321 23 HOH HOH . C 3 HOH B 22 322 65 HOH HOH . C 3 HOH B 23 323 37 HOH HOH . C 3 HOH B 24 324 72 HOH HOH . C 3 HOH B 25 325 39 HOH HOH . C 3 HOH B 26 326 32 HOH HOH . C 3 HOH B 27 327 18 HOH HOH . C 3 HOH B 28 328 30 HOH HOH . C 3 HOH B 29 329 45 HOH HOH . C 3 HOH B 30 330 90 HOH HOH . C 3 HOH B 31 331 26 HOH HOH . C 3 HOH B 32 332 103 HOH HOH . C 3 HOH B 33 333 59 HOH HOH . C 3 HOH B 34 334 69 HOH HOH . C 3 HOH B 35 335 52 HOH HOH . C 3 HOH B 36 336 89 HOH HOH . C 3 HOH B 37 337 34 HOH HOH . C 3 HOH B 38 338 27 HOH HOH . C 3 HOH B 39 339 50 HOH HOH . C 3 HOH B 40 340 4 HOH HOH . C 3 HOH B 41 341 107 HOH HOH . C 3 HOH B 42 342 35 HOH HOH . C 3 HOH B 43 343 71 HOH HOH . C 3 HOH B 44 344 62 HOH HOH . C 3 HOH B 45 345 29 HOH HOH . C 3 HOH B 46 346 38 HOH HOH . C 3 HOH B 47 347 17 HOH HOH . C 3 HOH B 48 348 110 HOH HOH . C 3 HOH B 49 349 102 HOH HOH . C 3 HOH B 50 350 24 HOH HOH . C 3 HOH B 51 351 48 HOH HOH . C 3 HOH B 52 352 74 HOH HOH . C 3 HOH B 53 353 75 HOH HOH . C 3 HOH B 54 354 70 HOH HOH . C 3 HOH B 55 355 100 HOH HOH . C 3 HOH B 56 356 46 HOH HOH . C 3 HOH B 57 357 33 HOH HOH . C 3 HOH B 58 358 79 HOH HOH . C 3 HOH B 59 359 96 HOH HOH . C 3 HOH B 60 360 21 HOH HOH . C 3 HOH B 61 361 16 HOH HOH . C 3 HOH B 62 362 25 HOH HOH . C 3 HOH B 63 363 44 HOH HOH . C 3 HOH B 64 364 14 HOH HOH . C 3 HOH B 65 365 20 HOH HOH . C 3 HOH B 66 366 22 HOH HOH . C 3 HOH B 67 367 42 HOH HOH . C 3 HOH B 68 368 31 HOH HOH . C 3 HOH B 69 369 8 HOH HOH . C 3 HOH B 70 370 140 HOH HOH . C 3 HOH B 71 371 56 HOH HOH . C 3 HOH B 72 372 61 HOH HOH . C 3 HOH B 73 373 5 HOH HOH . C 3 HOH B 74 374 1 HOH HOH . C 3 HOH B 75 375 43 HOH HOH . C 3 HOH B 76 376 66 HOH HOH . C 3 HOH B 77 377 84 HOH HOH . C 3 HOH B 78 378 81 HOH HOH . C 3 HOH B 79 379 41 HOH HOH . C 3 HOH B 80 380 109 HOH HOH . C 3 HOH B 81 381 64 HOH HOH . C 3 HOH B 82 382 139 HOH HOH . C 3 HOH B 83 383 73 HOH HOH . C 3 HOH B 84 384 47 HOH HOH . C 3 HOH B 85 385 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . B 2 1.17 7.5 4.574 1 20 ? C1 MAN 201 B 1 HETATM 2 C C2 MAN . . . B 2 -0.308 7.709 4.265 1 18.04 ? C2 MAN 201 B 1 HETATM 3 C C3 MAN . . . B 2 -1.064 6.433 4.557 1 19.96 ? C3 MAN 201 B 1 HETATM 4 C C4 MAN . . . B 2 -0.462 5.237 3.848 1 18.91 ? C4 MAN 201 B 1 HETATM 5 C C5 MAN . . . B 2 1.031 5.126 4.197 1 17.8 ? C5 MAN 201 B 1 HETATM 6 C C6 MAN . . . B 2 1.726 4.03 3.47 1 18.5 ? C6 MAN 201 B 1 HETATM 7 O O1 MAN . . . B 2 1.266 7.394 6.01 1 22.32 ? O1 MAN 201 B 1 HETATM 8 O O2 MAN . . . B 2 -0.447 7.965 2.855 1 19.34 ? O2 MAN 201 B 1 HETATM 9 O O3 MAN . . . B 2 -2.439 6.575 4.206 1 21.2 ? O3 MAN 201 B 1 HETATM 10 O O4 MAN . . . B 2 -1.148 4.085 4.228 1 17.78 ? O4 MAN 201 B 1 HETATM 11 O O5 MAN . . . B 2 1.685 6.384 3.887 1 18.47 ? O5 MAN 201 B 1 HETATM 12 O O6 MAN . . . B 2 1.648 4.277 2.079 1 16.48 ? O6 MAN 201 B 1 HETATM 13 H H1 MAN . . . B 2 1.781 8.345 4.221 1 24 ? H1 MAN 201 B 1 HETATM 14 H H2 MAN . . . B 2 -0.738 8.521 4.866 1 21.65 ? H2 MAN 201 B 1 HETATM 15 H H3 MAN . . . B 2 -1.011 6.227 5.631 1 23.95 ? H3 MAN 201 B 1 HETATM 16 H H4 MAN . . . B 2 -0.524 5.388 2.757 1 22.69 ? H4 MAN 201 B 1 HETATM 17 H H5 MAN . . . B 2 1.136 4.925 5.272 1 21.37 ? H5 MAN 201 B 1 HETATM 18 H H61 MAN . . . B 2 1.241 3.078 3.736 1 22.2 ? H61 MAN 201 B 1 HETATM 19 H H62 MAN . . . B 2 2.771 3.996 3.813 1 22.2 ? H62 MAN 201 B 1 HETATM 20 H HO1 MAN . . . B 2 2.208 7.244 6.228 1 26.78 ? HO1 MAN 201 B 1 HETATM 21 H HO2 MAN . . . B 2 -1.376 8.205 2.677 1 23.2 ? HO2 MAN 201 B 1 HETATM 22 H HO3 MAN . . . B 2 -2.736 7.369 4.667 1 25.44 ? HO3 MAN 201 B 1 HETATM 23 H HO6 MAN . . . B 2 1.661 3.423 1.634 1 19.77 ? HO6 MAN 201 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #